RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 MT1LQ93083 61 aa2.65□□□□□ -1.99
HMGXB4-202ENST00000418170 KRTAP19-6Q3LI70 58 aa2.63□□□□□ -1.99
HMGXB4-202ENST00000418170 KRTAP12-4P60329 112 aa2.62□□□□□ -1.99
HMGXB4-202ENST00000418170 MT1EP04732 61 aa2.6□□□□□ -1.99
HMGXB4-202ENST00000418170 MUC12Q9UKN1 5478 aa2.6□□□□□ -1.99
HMGXB4-202ENST00000418170 MACF1Q9UPN3 7388 aaKnown RBP2.58□□□□□ -2
HMGXB4-202ENST00000418170 LOC100996750A0A140TA64 210 aa2.54□□□□□ -2
HMGXB4-202ENST00000418170 KRTAP4-6Q9BYQ5 205 aa2.51□□□□□ -2.01
HMGXB4-202ENST00000418170 MDN1Q9NU22 5596 aa2.5□□□□□ -2.01
HMGXB4-202ENST00000418170 SYNE2Q8WXH0 6885 aaKnown RBP2.5□□□□□ -2.01
HMGXB4-202ENST00000418170 MT1GP13640 62 aa2.49□□□□□ -2.01
HMGXB4-202ENST00000418170 KRTAP4-3Q9BYR4 195 aa2.48□□□□□ -2.01
HMGXB4-202ENST00000418170 KRTAP9-2Q9BYQ4 174 aa2.43□□□□□ -2.02
HMGXB4-202ENST00000418170 CRCT1Q9UGL9 99 aa2.42□□□□□ -2.02
HMGXB4-202ENST00000418170 MT1MQ8N339 61 aa2.41□□□□□ -2.02
HMGXB4-202ENST00000418170 MT1AP04731 61 aa2.38□□□□□ -2.03
HMGXB4-202ENST00000418170 LCE3BQ5TA77 95 aa2.38□□□□□ -2.03
HMGXB4-202ENST00000418170 KRTAP4-9Q9BYQ8 210 aa2.37□□□□□ -2.03
HMGXB4-202ENST00000418170 KRTAP19-3Q7Z4W3 81 aa2.37□□□□□ -2.03
HMGXB4-202ENST00000418170 KRTAP9-6A0A140TA67 174 aa2.35□□□□□ -2.03
HMGXB4-202ENST00000418170 DSTQ03001 7570 aaKnown RBP2.35□□□□□ -2.03
HMGXB4-202ENST00000418170 PRM1P04553 51 aa2.35□□□□□ -2.03
HMGXB4-202ENST00000418170 KRTAP9-7A8MTY7 169 aa2.34□□□□□ -2.03
HMGXB4-202ENST00000418170 KRTAP5-5Q701N2 237 aaPredicted RBP2.34□□□□□ -2.03
HMGXB4-202ENST00000418170 KRTAP5-9P26371 169 aa2.34□□□□□ -2.04
HMGXB4-202ENST00000418170 LCE5AQ5TCM9 118 aa2.33□□□□□ -2.04
HMGXB4-202ENST00000418170 LCE3DQ9BYE3 92 aa2.33□□□□□ -2.04
HMGXB4-202ENST00000418170 LCE3EQ5T5B0 92 aa2.32□□□□□ -2.04
HMGXB4-202ENST00000418170 SYNE1Q8NF91 8797 aaKnown RBP2.3□□□□□ -2.04
HMGXB4-202ENST00000418170 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.27□□□□□ -2.05
HMGXB4-202ENST00000418170 KRTAP6-3Q3LI67 103 aa2.27□□□□□ -2.05
HMGXB4-202ENST00000418170 KRTAP6-1Q3LI64 71 aa2.25□□□□□ -2.05
HMGXB4-202ENST00000418170 LCE1AQ5T7P2 110 aa2.25□□□□□ -2.05
HMGXB4-202ENST00000418170 KRTAP4-12Q9BQ66 201 aa2.22□□□□□ -2.05
HMGXB4-202ENST00000418170 LCE4AQ5TA78 99 aa2.21□□□□□ -2.06
HMGXB4-202ENST00000418170 SPRR2FQ96RM1 72 aa2.2□□□□□ -2.06
HMGXB4-202ENST00000418170 KRTAP2-2Q9BYT5 123 aa2.2□□□□□ -2.06
HMGXB4-202ENST00000418170 KRTAP6-2Q3LI66 62 aa2.19□□□□□ -2.06
HMGXB4-202ENST00000418170 KRTAP9-9Q9BYP9 154 aa2.14□□□□□ -2.07
HMGXB4-202ENST00000418170 KRTAP9-4Q9BYQ2 154 aa2.14□□□□□ -2.07
HMGXB4-202ENST00000418170 NEBP20929 6669 aa2.13□□□□□ -2.07
HMGXB4-202ENST00000418170 SPRR2EP22531 72 aa2.05□□□□□ -2.08
HMGXB4-202ENST00000418170 SPRR2BP35325 72 aa2.05□□□□□ -2.08
HMGXB4-202ENST00000418170 SPRR2AP35326 72 aa2.05□□□□□ -2.08
HMGXB4-202ENST00000418170 LCE1DQ5T752 114 aa2.04□□□□□ -2.08
HMGXB4-202ENST00000418170 KRTAP5-4Q6L8H1 288 aa2.02□□□□□ -2.09
HMGXB4-202ENST00000418170 OBSCNQ5VST9 7968 aa1.99□□□□□ -2.09
HMGXB4-202ENST00000418170 LCE1EQ5T753 118 aa1.98□□□□□ -2.09
HMGXB4-202ENST00000418170 MT3P25713 68 aa1.96□□□□□ -2.09
HMGXB4-202ENST00000418170 KRTAP4-2Q9BYR5 136 aa1.96□□□□□ -2.09
HMGXB4-202ENST00000418170 SPRR2DP22532 72 aa1.96□□□□□ -2.1
HMGXB4-202ENST00000418170 HMCN1Q96RW7 5635 aa1.95□□□□□ -2.1
HMGXB4-202ENST00000418170 KRTAP4-11Q9BYQ6 195 aa1.9□□□□□ -2.11
HMGXB4-202ENST00000418170 KRTAP5-3Q6L8H2 238 aa1.89□□□□□ -2.11
HMGXB4-202ENST00000418170 KRTAP5-2Q701N4 177 aa1.87□□□□□ -2.11
HMGXB4-202ENST00000418170 KRTAP20-1Q3LI63 56 aa1.84□□□□□ -2.12
HMGXB4-202ENST00000418170 KRTAP20-2Q3LI61 65 aa1.81□□□□□ -2.12
HMGXB4-202ENST00000418170 MT4P47944 62 aa1.73□□□□□ -2.13
HMGXB4-202ENST00000418170 MUC5ACP98088 5654 aa1.71□□□□□ -2.14
HMGXB4-202ENST00000418170 KRTAP5-10Q6L8G5 202 aa1.68□□□□□ -2.14
HMGXB4-202ENST00000418170 GPR98Q8WXG9 6306 aa1.64□□□□□ -2.15
HMGXB4-202ENST00000418170 AHNAK2Q8IVF2 5795 aa1.63□□□□□ -2.15
HMGXB4-202ENST00000418170 KRTAP5-1Q6L8H4 278 aa1.62□□□□□ -2.15
HMGXB4-202ENST00000418170 LCE1FQ5T754 118 aa1.57□□□□□ -2.16
HMGXB4-202ENST00000418170 KRTAP5-8O75690 187 aa1.55□□□□□ -2.16
HMGXB4-202ENST00000418170 LCE1BQ5T7P3 118 aa1.54□□□□□ -2.16
HMGXB4-202ENST00000418170 KRTAP5-7Q6L8G8 165 aa1.54□□□□□ -2.16
HMGXB4-202ENST00000418170 KRTAP21-1Q3LI58 79 aa1.52□□□□□ -2.17
HMGXB4-202ENST00000418170 MUC19Q7Z5P9 8384 aa1.5□□□□□ -2.17
HMGXB4-202ENST00000418170 LCE1CQ5T751 118 aa1.49□□□□□ -2.17
HMGXB4-202ENST00000418170 MUC5BQ9HC84 5762 aaPredicted RBP1.46□□□□□ -2.18
HMGXB4-202ENST00000418170 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.46□□□□□ -2.18
HMGXB4-202ENST00000418170 KRTAP21-2Q3LI59 83 aa1.45□□□□□ -2.18
HMGXB4-202ENST00000418170 AHNAKQ09666 5890 aaKnown RBP1.4□□□□□ -2.18
HMGXB4-202ENST00000418170 KRTAP4-4Q9BYR3 166 aa1.31□□□□□ -2.2
HMGXB4-202ENST00000418170 KRTAP5-11Q6L8G4 156 aa1.31□□□□□ -2.2
HMGXB4-202ENST00000418170 PHGR1C9JFL3 82 aa1.15□□□□□ -2.23
HMGXB4-202ENST00000418170 MUC16Q8WXI7 14507 aa0.79□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 8.8 ms