RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 FCGBPQ9Y6R7 5405 aaPredicted RBP3.81□□□□□ -1.8
PTPRF-204ENST00000412568 KRTAP19-4Q3LI73 84 aa3.8□□□□□ -1.8
PTPRF-204ENST00000412568 MT1EP04732 61 aa3.78□□□□□ -1.8
PTPRF-204ENST00000412568 MT1LQ93083 61 aa3.77□□□□□ -1.81
PTPRF-204ENST00000412568 KRTAP9-2Q9BYQ4 174 aa3.77□□□□□ -1.81
PTPRF-204ENST00000412568 KRTAP19-6Q3LI70 58 aa3.76□□□□□ -1.81
PTPRF-204ENST00000412568 LCE3BQ5TA77 95 aa3.76□□□□□ -1.81
PTPRF-204ENST00000412568 KRTAP12-4P60329 112 aa3.75□□□□□ -1.81
PTPRF-204ENST00000412568 KRTAP4-3Q9BYR4 195 aa3.75□□□□□ -1.81
PTPRF-204ENST00000412568 KRTAP19-3Q7Z4W3 81 aa3.73□□□□□ -1.81
PTPRF-204ENST00000412568 KRTAP19-7Q3SYF9 63 aa3.71□□□□□ -1.82
PTPRF-204ENST00000412568 SYNE2Q8WXH0 6885 aaKnown RBP3.69□□□□□ -1.82
PTPRF-204ENST00000412568 LOC100996750A0A140TA64 210 aa3.69□□□□□ -1.82
PTPRF-204ENST00000412568 SPRR2DP22532 72 aa3.68□□□□□ -1.82
PTPRF-204ENST00000412568 MT1MQ8N339 61 aa3.62□□□□□ -1.83
PTPRF-204ENST00000412568 MUC12Q9UKN1 5478 aa3.61□□□□□ -1.83
PTPRF-204ENST00000412568 SSPOA2VEC9 5147 aa3.59□□□□□ -1.84
PTPRF-204ENST00000412568 LCE2DQ5TA82 110 aaPredicted RBP3.59□□□□□ -1.84
PTPRF-204ENST00000412568 KRTAP9-6A8MVA2 160 aa3.52□□□□□ -1.85
PTPRF-204ENST00000412568 MACF1Q9UPN3 7388 aaKnown RBP3.52□□□□□ -1.85
PTPRF-204ENST00000412568 LCE3DQ9BYE3 92 aa3.48□□□□□ -1.85
PTPRF-204ENST00000412568 LCE3EQ5T5B0 92 aa3.43□□□□□ -1.86
PTPRF-204ENST00000412568 KRTAP9-6A0A140TA67 174 aa3.43□□□□□ -1.86
PTPRF-204ENST00000412568 KRTAP2-3P0C7H8 128 aa3.38□□□□□ -1.87
PTPRF-204ENST00000412568 MT4P47944 62 aa3.38□□□□□ -1.87
PTPRF-204ENST00000412568 KRTAP2-4Q9BYR9 128 aa3.38□□□□□ -1.87
PTPRF-204ENST00000412568 KRTAP2-1Q9BYU5 128 aa3.38□□□□□ -1.87
PTPRF-204ENST00000412568 KRTAP4-9Q9BYQ8 210 aa3.38□□□□□ -1.87
PTPRF-204ENST00000412568 MUC19Q7Z5P9 8384 aa3.33□□□□□ -1.88
PTPRF-204ENST00000412568 LCE5AQ5TCM9 118 aa3.32□□□□□ -1.88
PTPRF-204ENST00000412568 LCE1AQ5T7P2 110 aa3.3□□□□□ -1.88
PTPRF-204ENST00000412568 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.29□□□□□ -1.88
PTPRF-204ENST00000412568 PRM1P04553 51 aa3.28□□□□□ -1.88
PTPRF-204ENST00000412568 KRTAP9-7A8MTY7 169 aa3.26□□□□□ -1.89
PTPRF-204ENST00000412568 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
PTPRF-204ENST00000412568 MT1AP04731 61 aa3.23□□□□□ -1.89
PTPRF-204ENST00000412568 MT3P25713 68 aa3.22□□□□□ -1.89
PTPRF-204ENST00000412568 MDN1Q9NU22 5596 aa3.2□□□□□ -1.9
PTPRF-204ENST00000412568 KRTAP6-3Q3LI67 103 aa3.19□□□□□ -1.9
PTPRF-204ENST00000412568 KRTAP6-2Q3LI66 62 aa3.1□□□□□ -1.91
PTPRF-204ENST00000412568 LCE1DQ5T752 114 aa3.09□□□□□ -1.91
PTPRF-204ENST00000412568 LCE1BQ5T7P3 118 aa3.07□□□□□ -1.92
PTPRF-204ENST00000412568 KRTAP20-1Q3LI63 56 aa3.01□□□□□ -1.93
PTPRF-204ENST00000412568 KRTAP9-4Q9BYQ2 154 aa3.01□□□□□ -1.93
PTPRF-204ENST00000412568 KRTAP5-9P26371 169 aa3.01□□□□□ -1.93
PTPRF-204ENST00000412568 NEBP20929 6669 aa2.95□□□□□ -1.94
PTPRF-204ENST00000412568 KRTAP2-2Q9BYT5 123 aa2.92□□□□□ -1.94
PTPRF-204ENST00000412568 KRTAP4-6Q9BYQ5 205 aa2.87□□□□□ -1.95
PTPRF-204ENST00000412568 LCE4AQ5TA78 99 aa2.85□□□□□ -1.95
PTPRF-204ENST00000412568 KRTAP20-2Q3LI61 65 aa2.68□□□□□ -1.98
PTPRF-204ENST00000412568 KRTAP5-5Q701N2 237 aaPredicted RBP2.64□□□□□ -1.99
PTPRF-204ENST00000412568 MUC5ACP98088 5654 aa2.6□□□□□ -1.99
PTPRF-204ENST00000412568 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
PTPRF-204ENST00000412568 HMCN1Q96RW7 5635 aa2.49□□□□□ -2.01
PTPRF-204ENST00000412568 KRTAP4-11Q9BYQ6 195 aa2.47□□□□□ -2.01
PTPRF-204ENST00000412568 LCE1CQ5T751 118 aa2.42□□□□□ -2.02
PTPRF-204ENST00000412568 LCE1EQ5T753 118 aa2.42□□□□□ -2.02
PTPRF-204ENST00000412568 LCE1FQ5T754 118 aa2.42□□□□□ -2.02
PTPRF-204ENST00000412568 KRTAP5-4Q6L8H1 288 aa2.42□□□□□ -2.02
PTPRF-204ENST00000412568 KRTAP9-9Q9BYP9 154 aa2.35□□□□□ -2.03
PTPRF-204ENST00000412568 KRTAP4-4Q9BYR3 166 aa2.34□□□□□ -2.03
PTPRF-204ENST00000412568 KRTAP4-12Q9BQ66 201 aa2.34□□□□□ -2.04
PTPRF-204ENST00000412568 KRTAP4-2Q9BYR5 136 aa2.34□□□□□ -2.04
PTPRF-204ENST00000412568 KRTAP5-3Q6L8H2 238 aa2.25□□□□□ -2.05
PTPRF-204ENST00000412568 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
PTPRF-204ENST00000412568 KRTAP5-2Q701N4 177 aa2.17□□□□□ -2.06
PTPRF-204ENST00000412568 KRTAP5-8O75690 187 aa2.11□□□□□ -2.07
PTPRF-204ENST00000412568 MUC5BQ9HC84 5762 aaPredicted RBP2.05□□□□□ -2.08
PTPRF-204ENST00000412568 KRTAP5-10Q6L8G5 202 aa2.03□□□□□ -2.08
PTPRF-204ENST00000412568 KRTAP5-1Q6L8H4 278 aa1.96□□□□□ -2.1
PTPRF-204ENST00000412568 AHNAKQ09666 5890 aaKnown RBP1.9□□□□□ -2.11
PTPRF-204ENST00000412568 KRTAP21-2Q3LI59 83 aa1.82□□□□□ -2.12
PTPRF-204ENST00000412568 KRTAP5-11Q6L8G4 156 aa1.76□□□□□ -2.13
PTPRF-204ENST00000412568 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.7□□□□□ -2.14
PTPRF-204ENST00000412568 PHGR1C9JFL3 82 aa1.57□□□□□ -2.16
PTPRF-204ENST00000412568 KRTAP5-7Q6L8G8 165 aa1.57□□□□□ -2.16
PTPRF-204ENST00000412568 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
PTPRF-204ENST00000412568 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 129.7 ms