RNA–Protein interactions for RNA: ENST00000410828.1

RNU4-53P-201, Transcript of RNA, U4 small nuclear 53, pseudogene, humanhuman

BASIC

Gene RNU4-53P, Length 140 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-53P-201ENST00000410828 SPATA8Q6RVD6 105 aa0.72□□□□□ -2.29
RNU4-53P-201ENST00000410828 LINC00643Q86TS7 51 aa0.72□□□□□ -2.29
RNU4-53P-201ENST00000410828 SERP1Q9Y6X1 66 aa0.72□□□□□ -2.29
RNU4-53P-201ENST00000410828 MT1AP04731 61 aa0.71□□□□□ -2.3
RNU4-53P-201ENST00000410828 SEC61GP60059 68 aa0.71□□□□□ -2.3
RNU4-53P-201ENST00000410828 A0A1B0GU33 70 aa0.7□□□□□ -2.3
RNU4-53P-201ENST00000410828 KRTAP6-1Q3LI64 71 aa0.7□□□□□ -2.3
RNU4-53P-201ENST00000410828 KRTAP19-4Q3LI73 84 aa0.7□□□□□ -2.3
RNU4-53P-201ENST00000410828 KRTAP9-4Q9BYQ2 154 aa0.7□□□□□ -2.3
RNU4-53P-201ENST00000410828 SMIM26A0A096LP01 95 aa0.69□□□□□ -2.3
RNU4-53P-201ENST00000410828 KRTAP6-2Q3LI66 62 aa0.69□□□□□ -2.3
RNU4-53P-201ENST00000410828 KRTAP5-1Q6L8H4 278 aa0.69□□□□□ -2.3
RNU4-53P-201ENST00000410828 KRTAP25-1Q3LHN0 102 aa0.67□□□□□ -2.3
RNU4-53P-201ENST00000410828 SMIM20Q8N5G0 67 aa0.67□□□□□ -2.3
RNU4-53P-201ENST00000410828 SPANXA2-OT1Q8N9U9 137 aa0.67□□□□□ -2.3
RNU4-53P-201ENST00000410828 A8MU10 97 aa0.66□□□□□ -2.3
RNU4-53P-201ENST00000410828 MT3P25713 68 aa0.66□□□□□ -2.3
RNU4-53P-201ENST00000410828 LCE3CQ5T5A8 94 aa0.66□□□□□ -2.3
RNU4-53P-201ENST00000410828 COA5Q86WW8 74 aa0.66□□□□□ -2.3
RNU4-53P-201ENST00000410828 SERP2Q8N6R1 65 aa0.66□□□□□ -2.3
RNU4-53P-201ENST00000410828 KRTAP15-1Q3LI76 137 aa0.65□□□□□ -2.31
RNU4-53P-201ENST00000410828 SNURFQ9Y675 71 aa0.65□□□□□ -2.31
RNU4-53P-201ENST00000410828 A0A1B0GU69 56 aa0.64□□□□□ -2.31
RNU4-53P-201ENST00000410828 J3QR89 54 aa0.63□□□□□ -2.31
RNU4-53P-201ENST00000410828 LCE1EQ5T753 118 aa0.63□□□□□ -2.31
RNU4-53P-201ENST00000410828 LOC105371267A0A1B0GV96 52 aa0.62□□□□□ -2.31
RNU4-53P-201ENST00000410828 KRTAP23-1A1A580 65 aa0.61□□□□□ -2.31
RNU4-53P-201ENST00000410828 KRTAP9-6A8MVA2 160 aa0.61□□□□□ -2.31
RNU4-53P-201ENST00000410828 H7BZZ5 65 aa0.61□□□□□ -2.31
RNU4-53P-201ENST00000410828 PCP4L1A6NKN8 68 aa0.6□□□□□ -2.31
RNU4-53P-201ENST00000410828 LCE1BQ5T7P3 118 aa0.6□□□□□ -2.31
RNU4-53P-201ENST00000410828 PRR15LQ9BU68 103 aa0.6□□□□□ -2.31
RNU4-53P-201ENST00000410828 KRTAP4-2Q9BYR5 136 aa0.59□□□□□ -2.31
RNU4-53P-201ENST00000410828 LCE1CQ5T751 118 aa0.58□□□□□ -2.32
RNU4-53P-201ENST00000410828 KRTAP4-12Q9BQ66 201 aa0.58□□□□□ -2.32
RNU4-53P-201ENST00000410828 K7ERS5 55 aa0.57□□□□□ -2.32
RNU4-53P-201ENST00000410828 A0A1B0GV90 55 aa0.56□□□□□ -2.32
RNU4-53P-201ENST00000410828 UQCR11O14957 56 aa0.56□□□□□ -2.32
RNU4-53P-201ENST00000410828 RPS28P62857 69 aaKnown RBP0.56□□□□□ -2.32
RNU4-53P-201ENST00000410828 LCE1FQ5T754 118 aa0.56□□□□□ -2.32
RNU4-53P-201ENST00000410828 PHGR1C9JFL3 82 aa0.55□□□□□ -2.32
RNU4-53P-201ENST00000410828 KRTAP5-11Q6L8G4 156 aa0.55□□□□□ -2.32
RNU4-53P-201ENST00000410828 COX7CP15954 63 aa0.54□□□□□ -2.32
RNU4-53P-201ENST00000410828 MIR22HGQ0VDD5 57 aa0.54□□□□□ -2.32
RNU4-53P-201ENST00000410828 LINC01558Q9Y6Z2 57 aa0.54□□□□□ -2.32
RNU4-53P-201ENST00000410828 K7ERU9 68 aa0.53□□□□□ -2.32
RNU4-53P-201ENST00000410828 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.51□□□□□ -2.33
RNU4-53P-201ENST00000410828 CDC42SE1Q9NRR8 79 aa0.51□□□□□ -2.33
RNU4-53P-201ENST00000410828 ROMO1P60602 79 aa0.49□□□□□ -2.33
RNU4-53P-201ENST00000410828 Q1T7F1 81 aa0.49□□□□□ -2.33
RNU4-53P-201ENST00000410828 MUC19Q7Z5P9 8384 aa0.49□□□□□ -2.33
RNU4-53P-201ENST00000410828 ATP5EP56381 51 aaPredicted RBP0.48□□□□□ -2.33
RNU4-53P-201ENST00000410828 KRTAP21-2Q3LI59 83 aa0.46□□□□□ -2.34
RNU4-53P-201ENST00000410828 ANAPC13Q9BS18 74 aa0.46□□□□□ -2.34
RNU4-53P-201ENST00000410828 LCE3DQ9BYE3 92 aa0.46□□□□□ -2.34
RNU4-53P-201ENST00000410828 PSPHP1O15172 72 aa0.45□□□□□ -2.34
RNU4-53P-201ENST00000410828 A6NED7 52 aa0.44□□□□□ -2.34
RNU4-53P-201ENST00000410828 CCDC179H3BU77 68 aa0.44□□□□□ -2.34
RNU4-53P-201ENST00000410828 KRTAP4-4Q9BYR3 166 aa0.44□□□□□ -2.34
RNU4-53P-201ENST00000410828 V9GYY9 64 aa0.44□□□□□ -2.34
RNU4-53P-201ENST00000410828 KRTAP21-1Q3LI58 79 aa0.43□□□□□ -2.34
RNU4-53P-201ENST00000410828 TMEM258P61165 79 aa0.42□□□□□ -2.34
RNU4-53P-201ENST00000410828 LCE3EQ5T5B0 92 aa0.42□□□□□ -2.34
RNU4-53P-201ENST00000410828 MUC16Q8WXI7 14507 aa0.29□□□□□ -2.36
RNU4-53P-201ENST00000410828 BRK1Q8WUW1 75 aa0.28□□□□□ -2.36
RNU4-53P-201ENST00000410828 LUZP6Q538Z0 58 aa0.25□□□□□ -2.37
RNU4-53P-201ENST00000410828 PRM1P04553 51 aa0.23□□□□□ -2.37
RNU4-53P-201ENST00000410828 PRAC1Q96KF2 57 aa0.22□□□□□ -2.37
RNU4-53P-201ENST00000410828 PMAIP1Q13794 54 aa0.21□□□□□ -2.38
RNU4-53P-201ENST00000410828 PCP4P48539 62 aa0.14□□□□□ -2.39
RNU4-53P-201ENST00000410828 SVIPQ8NHG7 77 aa0.13□□□□□ -2.39
RNU4-53P-201ENST00000410828 KTN1-AS1Q86SY8 53 aa0.1□□□□□ -2.39
RNU4-53P-201ENST00000410828 PRO0628Q9UI54 55 aa0.07□□□□□ -2.4
RNU4-53P-201ENST00000410828 NDUFAF8A1L188 74 aa0.03□□□□□ -2.4
RNU4-53P-201ENST00000410828 INE1O15225 51 aa0□□□□□ -2.41
RNU4-53P-201ENST00000410828 A0A0A0MQY5 61 aa-0.05□□□□□ -2.42
RNU4-53P-201ENST00000410828 H3BS24 57 aa-0.47□□□□□ -2.48
Retrieved 77 of 20,778 RNA–protein pairs in 11.6 ms