RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MUC17Q685J3 4493 aa2.55□□□□□ -2
SCN9A-202ENST00000409435 KRTAP2-2Q9BYT5 123 aa2.54□□□□□ -2
SCN9A-202ENST00000409435 KRTAP2-1Q9BYU5 128 aa2.54□□□□□ -2
SCN9A-202ENST00000409435 KRTAP19-2Q3LHN2 52 aa2.48□□□□□ -2.01
SCN9A-202ENST00000409435 LPAP08519 4548 aa2.47□□□□□ -2.01
SCN9A-202ENST00000409435 LCE3DQ9BYE3 92 aa2.46□□□□□ -2.02
SCN9A-202ENST00000409435 UBR4Q5T4S7 5183 aa2.46□□□□□ -2.02
SCN9A-202ENST00000409435 LCE3EQ5T5B0 92 aa2.46□□□□□ -2.02
SCN9A-202ENST00000409435 RNF213Q63HN8 5207 aa2.44□□□□□ -2.02
SCN9A-202ENST00000409435 LCE1AQ5T7P2 110 aa2.42□□□□□ -2.02
SCN9A-202ENST00000409435 TNXBP22105 4242 aa2.41□□□□□ -2.02
SCN9A-202ENST00000409435 FSIP2Q5CZC0 6907 aa2.4□□□□□ -2.03
SCN9A-202ENST00000409435 LCE4AQ5TA78 99 aa2.39□□□□□ -2.03
SCN9A-202ENST00000409435 MT1EP04732 61 aa2.39□□□□□ -2.03
SCN9A-202ENST00000409435 FAT4Q6V0I7 4981 aa2.38□□□□□ -2.03
SCN9A-202ENST00000409435 KRTAP4-9Q9BYQ8 210 aa2.37□□□□□ -2.03
SCN9A-202ENST00000409435 MT1MQ8N339 61 aa2.35□□□□□ -2.03
SCN9A-202ENST00000409435 MT1LQ93083 61 aa2.35□□□□□ -2.03
SCN9A-202ENST00000409435 FLGP20930 4061 aaPredicted RBP2.33□□□□□ -2.04
SCN9A-202ENST00000409435 PRM1P04553 51 aa2.33□□□□□ -2.04
SCN9A-202ENST00000409435 LCE1DQ5T752 114 aa2.31□□□□□ -2.04
SCN9A-202ENST00000409435 LCE1BQ5T7P3 118 aa2.31□□□□□ -2.04
SCN9A-202ENST00000409435 HMCN2Q8NDA2 5059 aa2.3□□□□□ -2.04
SCN9A-202ENST00000409435 LCE5AQ5TCM9 118 aa2.28□□□□□ -2.04
SCN9A-202ENST00000409435 NEBP20929 6669 aa2.24□□□□□ -2.05
SCN9A-202ENST00000409435 KRTAP4-7Q9BYR0 210 aa2.21□□□□□ -2.06
SCN9A-202ENST00000409435 MUC2Q02817 5179 aa2.2□□□□□ -2.06
SCN9A-202ENST00000409435 KRTAP9-9Q9BYP9 154 aa2.2□□□□□ -2.06
SCN9A-202ENST00000409435 KRTAP4-3Q9BYR4 195 aa2.18□□□□□ -2.06
SCN9A-202ENST00000409435 MT1AP04731 61 aa2.15□□□□□ -2.06
SCN9A-202ENST00000409435 LOC100996750A0A140TA64 210 aa2.13□□□□□ -2.07
SCN9A-202ENST00000409435 LCE1CQ5T751 118 aa2.1□□□□□ -2.07
SCN9A-202ENST00000409435 LCE1EQ5T753 118 aa2.1□□□□□ -2.07
SCN9A-202ENST00000409435 LCE1FQ5T754 118 aa2.1□□□□□ -2.07
SCN9A-202ENST00000409435 KRTAP19-7Q3SYF9 63 aa2.1□□□□□ -2.07
SCN9A-202ENST00000409435 KRTAP5-9P26371 169 aa2.09□□□□□ -2.07
SCN9A-202ENST00000409435 SSPOA2VEC9 5147 aa2.07□□□□□ -2.08
SCN9A-202ENST00000409435 KRTAP6-2Q3LI66 62 aa2.03□□□□□ -2.08
SCN9A-202ENST00000409435 KRTAP9-4Q9BYQ2 154 aa2.03□□□□□ -2.08
SCN9A-202ENST00000409435 MACF1Q9UPN3 7388 aaKnown RBP2.03□□□□□ -2.09
SCN9A-202ENST00000409435 GPR98Q8WXG9 6306 aa2.02□□□□□ -2.09
SCN9A-202ENST00000409435 KRTAP6-1Q3LI64 71 aa1.95□□□□□ -2.1
SCN9A-202ENST00000409435 USH2AO75445 5202 aa1.91□□□□□ -2.1
SCN9A-202ENST00000409435 KRTAP4-6Q9BYQ5 205 aa1.9□□□□□ -2.11
SCN9A-202ENST00000409435 SYNE1Q8NF91 8797 aaKnown RBP1.9□□□□□ -2.11
SCN9A-202ENST00000409435 KRTAP20-2Q3LI61 65 aa1.89□□□□□ -2.11
SCN9A-202ENST00000409435 FCGBPQ9Y6R7 5405 aaPredicted RBP1.87□□□□□ -2.11
SCN9A-202ENST00000409435 KMT2DO14686 5537 aa1.85□□□□□ -2.11
SCN9A-202ENST00000409435 KRTAP5-4Q6L8H1 288 aa1.85□□□□□ -2.11
SCN9A-202ENST00000409435 OBSCNQ5VST9 7968 aa1.81□□□□□ -2.12
SCN9A-202ENST00000409435 KRTAP4-11Q9BYQ6 195 aa1.78□□□□□ -2.12
SCN9A-202ENST00000409435 DSTQ03001 7570 aaKnown RBP1.77□□□□□ -2.13
SCN9A-202ENST00000409435 MDN1Q9NU22 5596 aa1.77□□□□□ -2.13
SCN9A-202ENST00000409435 KRTAP5-3Q6L8H2 238 aa1.76□□□□□ -2.13
SCN9A-202ENST00000409435 KRTAP4-12Q9BQ66 201 aa1.67□□□□□ -2.14
SCN9A-202ENST00000409435 KRTAP4-2Q9BYR5 136 aa1.67□□□□□ -2.14
SCN9A-202ENST00000409435 KRTAP9-6A8MVA2 160 aa1.65□□□□□ -2.15
SCN9A-202ENST00000409435 AHNAK2Q8IVF2 5795 aa1.64□□□□□ -2.15
SCN9A-202ENST00000409435 HMCN1Q96RW7 5635 aa1.61□□□□□ -2.15
SCN9A-202ENST00000409435 KRTAP5-8O75690 187 aa1.54□□□□□ -2.16
SCN9A-202ENST00000409435 MUC12Q9UKN1 5478 aa1.52□□□□□ -2.17
SCN9A-202ENST00000409435 KRTAP5-5Q701N2 237 aaPredicted RBP1.52□□□□□ -2.17
SCN9A-202ENST00000409435 MUC5ACP98088 5654 aa1.51□□□□□ -2.17
SCN9A-202ENST00000409435 PHGR1C9JFL3 82 aa1.51□□□□□ -2.17
SCN9A-202ENST00000409435 KRTAP4-4Q9BYR3 166 aa1.51□□□□□ -2.17
SCN9A-202ENST00000409435 KRTAP5-7Q6L8G8 165 aa1.44□□□□□ -2.18
SCN9A-202ENST00000409435 MUC19Q7Z5P9 8384 aa1.43□□□□□ -2.18
SCN9A-202ENST00000409435 AHNAKQ09666 5890 aaKnown RBP1.41□□□□□ -2.18
SCN9A-202ENST00000409435 KRTAP5-10Q6L8G5 202 aa1.4□□□□□ -2.19
SCN9A-202ENST00000409435 MUC5BQ9HC84 5762 aaPredicted RBP1.35□□□□□ -2.19
SCN9A-202ENST00000409435 KRTAP5-2Q701N4 177 aa1.28□□□□□ -2.2
SCN9A-202ENST00000409435 KRTAP5-11Q6L8G4 156 aa1.17□□□□□ -2.22
SCN9A-202ENST00000409435 KRTAP5-1Q6L8H4 278 aa1.16□□□□□ -2.22
SCN9A-202ENST00000409435 KRTAP21-1Q3LI58 79 aa1.11□□□□□ -2.23
SCN9A-202ENST00000409435 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.08□□□□□ -2.24
SCN9A-202ENST00000409435 KRTAP21-2Q3LI59 83 aa1.05□□□□□ -2.24
SCN9A-202ENST00000409435 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 127.9 ms