RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 MT1LQ93083 61 aa7.14□□□□□ -1.27
CTCF-202ENST00000401394 KRTAP4-3Q9BYR4 195 aa7.13□□□□□ -1.27
CTCF-202ENST00000401394 MT1EP04732 61 aa7.09□□□□□ -1.27
CTCF-202ENST00000401394 CRCT1Q9UGL9 99 aa6.99□□□□□ -1.29
CTCF-202ENST00000401394 KRTAP19-6Q3LI70 58 aa6.98□□□□□ -1.29
CTCF-202ENST00000401394 MT1GP13640 62 aa6.92□□□□□ -1.3
CTCF-202ENST00000401394 KRTAP9-2Q9BYQ4 174 aa6.84□□□□□ -1.31
CTCF-202ENST00000401394 LCE2DQ5TA82 110 aaPredicted RBP6.83□□□□□ -1.32
CTCF-202ENST00000401394 SYNE1Q8NF91 8797 aaKnown RBP6.81□□□□□ -1.32
CTCF-202ENST00000401394 KRTAP9-6A0A140TA67 174 aa6.68□□□□□ -1.34
CTCF-202ENST00000401394 KRTAP19-4Q3LI73 84 aa6.65□□□□□ -1.34
CTCF-202ENST00000401394 MT1MQ8N339 61 aa6.62□□□□□ -1.35
CTCF-202ENST00000401394 KRTAP12-4P60329 112 aa6.61□□□□□ -1.35
CTCF-202ENST00000401394 KRTAP4-9Q9BYQ8 210 aa6.59□□□□□ -1.35
CTCF-202ENST00000401394 SYNE2Q8WXH0 6885 aaKnown RBP6.55□□□□□ -1.36
CTCF-202ENST00000401394 OBSCNQ5VST9 7968 aa6.53□□□□□ -1.36
CTCF-202ENST00000401394 KRTAP19-3Q7Z4W3 81 aa6.53□□□□□ -1.36
CTCF-202ENST00000401394 LCE3BQ5TA77 95 aa6.49□□□□□ -1.37
CTCF-202ENST00000401394 MACF1Q9UPN3 7388 aaKnown RBP6.46□□□□□ -1.38
CTCF-202ENST00000401394 MDN1Q9NU22 5596 aa6.36□□□□□ -1.39
CTCF-202ENST00000401394 SPRR2FQ96RM1 72 aa6.36□□□□□ -1.39
CTCF-202ENST00000401394 LCE5AQ5TCM9 118 aa6.26□□□□□ -1.41
CTCF-202ENST00000401394 KRTAP6-1Q3LI64 71 aa6.2□□□□□ -1.42
CTCF-202ENST00000401394 KRTAP9-7A8MTY7 169 aa6.1□□□□□ -1.43
CTCF-202ENST00000401394 KRTAP5-9P26371 169 aa6.02□□□□□ -1.45
CTCF-202ENST00000401394 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.97□□□□□ -1.45
CTCF-202ENST00000401394 LCE3DQ9BYE3 92 aa5.97□□□□□ -1.45
CTCF-202ENST00000401394 KRTAP5-5Q701N2 237 aaPredicted RBP5.94□□□□□ -1.46
CTCF-202ENST00000401394 LCE1AQ5T7P2 110 aa5.94□□□□□ -1.46
CTCF-202ENST00000401394 PRM1P04553 51 aa5.92□□□□□ -1.46
CTCF-202ENST00000401394 MT1AP04731 61 aa5.87□□□□□ -1.47
CTCF-202ENST00000401394 LCE3EQ5T5B0 92 aa5.86□□□□□ -1.47
CTCF-202ENST00000401394 SPRR2EP22531 72 aa5.86□□□□□ -1.47
CTCF-202ENST00000401394 SPRR2BP35325 72 aa5.86□□□□□ -1.47
CTCF-202ENST00000401394 SPRR2AP35326 72 aa5.86□□□□□ -1.47
CTCF-202ENST00000401394 KRTAP6-3Q3LI67 103 aa5.7□□□□□ -1.5
CTCF-202ENST00000401394 KRTAP6-2Q3LI66 62 aa5.65□□□□□ -1.51
CTCF-202ENST00000401394 SPRR2DP22532 72 aa5.62□□□□□ -1.51
CTCF-202ENST00000401394 KRTAP9-4Q9BYQ2 154 aa5.52□□□□□ -1.53
CTCF-202ENST00000401394 NEBP20929 6669 aa5.37□□□□□ -1.55
CTCF-202ENST00000401394 MT3P25713 68 aa5.23□□□□□ -1.57
CTCF-202ENST00000401394 KRTAP20-1Q3LI63 56 aa5.23□□□□□ -1.57
CTCF-202ENST00000401394 KRTAP2-2Q9BYT5 123 aa5.23□□□□□ -1.57
CTCF-202ENST00000401394 LCE1EQ5T753 118 aa5.13□□□□□ -1.59
CTCF-202ENST00000401394 KRTAP5-4Q6L8H1 288 aa5.13□□□□□ -1.59
CTCF-202ENST00000401394 KRTAP4-6Q9BYQ5 205 aa5.01□□□□□ -1.61
CTCF-202ENST00000401394 MT4P47944 62 aa4.95□□□□□ -1.62
CTCF-202ENST00000401394 LCE4AQ5TA78 99 aa4.93□□□□□ -1.62
CTCF-202ENST00000401394 LCE1DQ5T752 114 aa4.87□□□□□ -1.63
CTCF-202ENST00000401394 KRTAP20-2Q3LI61 65 aa4.81□□□□□ -1.64
CTCF-202ENST00000401394 MUC5ACP98088 5654 aa4.76□□□□□ -1.65
CTCF-202ENST00000401394 KRTAP5-2Q701N4 177 aa4.73□□□□□ -1.65
CTCF-202ENST00000401394 HMCN1Q96RW7 5635 aa4.72□□□□□ -1.65
CTCF-202ENST00000401394 GPR98Q8WXG9 6306 aa4.64□□□□□ -1.67
CTCF-202ENST00000401394 KRTAP5-3Q6L8H2 238 aa4.59□□□□□ -1.67
CTCF-202ENST00000401394 KRTAP4-11Q9BYQ6 195 aa4.56□□□□□ -1.68
CTCF-202ENST00000401394 LCE1FQ5T754 118 aa4.52□□□□□ -1.69
CTCF-202ENST00000401394 LCE1BQ5T7P3 118 aa4.52□□□□□ -1.69
CTCF-202ENST00000401394 KRTAP5-10Q6L8G5 202 aa4.33□□□□□ -1.72
CTCF-202ENST00000401394 MUC19Q7Z5P9 8384 aa4.32□□□□□ -1.72
CTCF-202ENST00000401394 AHNAK2Q8IVF2 5795 aa4.14□□□□□ -1.75
CTCF-202ENST00000401394 KRTAP5-1Q6L8H4 278 aa4.11□□□□□ -1.75
CTCF-202ENST00000401394 KRTAP4-2Q9BYR5 136 aa4.09□□□□□ -1.75
CTCF-202ENST00000401394 LCE1CQ5T751 118 aa4□□□□□ -1.77
CTCF-202ENST00000401394 KRTAP4-4Q9BYR3 166 aa3.95□□□□□ -1.78
CTCF-202ENST00000401394 KRTAP21-2Q3LI59 83 aa3.91□□□□□ -1.78
CTCF-202ENST00000401394 KRTAP5-7Q6L8G8 165 aa3.9□□□□□ -1.79
CTCF-202ENST00000401394 KRTAP5-8O75690 187 aa3.89□□□□□ -1.79
CTCF-202ENST00000401394 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.75□□□□□ -1.81
CTCF-202ENST00000401394 MUC5BQ9HC84 5762 aaPredicted RBP3.73□□□□□ -1.81
CTCF-202ENST00000401394 KRTAP4-12Q9BQ66 201 aa3.59□□□□□ -1.83
CTCF-202ENST00000401394 KRTAP21-1Q3LI58 79 aa3.56□□□□□ -1.84
CTCF-202ENST00000401394 AHNAKQ09666 5890 aaKnown RBP3.5□□□□□ -1.85
CTCF-202ENST00000401394 KRTAP5-11Q6L8G4 156 aa3.48□□□□□ -1.85
CTCF-202ENST00000401394 KRTAP9-9Q9BYP9 154 aa3.42□□□□□ -1.86
CTCF-202ENST00000401394 PHGR1C9JFL3 82 aa3□□□□□ -1.93
CTCF-202ENST00000401394 MUC16Q8WXI7 14507 aa2.05□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 167.3 ms