RNA–Protein interactions for RNA: ENST00000396033.6

ITGB1-202, Transcript of integrin subunit beta 1, humanhuman

APPRIS P2 TSL 5 BASIC

Gene ITGB1, Length 3,784 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-202ENST00000396033 MUC12Q9UKN1 5478 aa4.16□□□□□ -1.74
ITGB1-202ENST00000396033 MACF1Q9UPN3 7388 aaKnown RBP4.16□□□□□ -1.74
ITGB1-202ENST00000396033 CRCT1Q9UGL9 99 aa4.14□□□□□ -1.75
ITGB1-202ENST00000396033 SPRR2FQ96RM1 72 aa4.13□□□□□ -1.75
ITGB1-202ENST00000396033 KRTAP19-3Q7Z4W3 81 aa4.12□□□□□ -1.75
ITGB1-202ENST00000396033 MT1GP13640 62 aa4.08□□□□□ -1.76
ITGB1-202ENST00000396033 MT1MQ8N339 61 aa4.07□□□□□ -1.76
ITGB1-202ENST00000396033 KRTAP4-3Q9BYR4 195 aa4.05□□□□□ -1.76
ITGB1-202ENST00000396033 SYNE2Q8WXH0 6885 aaKnown RBP4.03□□□□□ -1.76
ITGB1-202ENST00000396033 LCE5AQ5TCM9 118 aa4.01□□□□□ -1.77
ITGB1-202ENST00000396033 KRTAP2-3P0C7H8 128 aa3.98□□□□□ -1.77
ITGB1-202ENST00000396033 KRTAP2-4Q9BYR9 128 aa3.98□□□□□ -1.77
ITGB1-202ENST00000396033 KRTAP2-1Q9BYU5 128 aa3.98□□□□□ -1.77
ITGB1-202ENST00000396033 LOC100996750A0A140TA64 210 aa3.96□□□□□ -1.78
ITGB1-202ENST00000396033 KRTAP5-9P26371 169 aa3.95□□□□□ -1.78
ITGB1-202ENST00000396033 MDN1Q9NU22 5596 aa3.93□□□□□ -1.78
ITGB1-202ENST00000396033 LCE1AQ5T7P2 110 aa3.88□□□□□ -1.79
ITGB1-202ENST00000396033 DSTQ03001 7570 aaKnown RBP3.85□□□□□ -1.79
ITGB1-202ENST00000396033 SPRR2EP22531 72 aa3.85□□□□□ -1.79
ITGB1-202ENST00000396033 SPRR2BP35325 72 aa3.85□□□□□ -1.79
ITGB1-202ENST00000396033 SPRR2AP35326 72 aa3.85□□□□□ -1.79
ITGB1-202ENST00000396033 KRTAP9-6A0A140TA67 174 aa3.83□□□□□ -1.8
ITGB1-202ENST00000396033 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.83□□□□□ -1.8
ITGB1-202ENST00000396033 KRTAP6-3Q3LI67 103 aa3.78□□□□□ -1.8
ITGB1-202ENST00000396033 SPRR2DP22532 72 aa3.7□□□□□ -1.82
ITGB1-202ENST00000396033 KRTAP5-5Q701N2 237 aaPredicted RBP3.63□□□□□ -1.83
ITGB1-202ENST00000396033 KRTAP6-1Q3LI64 71 aa3.62□□□□□ -1.83
ITGB1-202ENST00000396033 MT1AP04731 61 aa3.62□□□□□ -1.83
ITGB1-202ENST00000396033 LCE3BQ5TA77 95 aa3.6□□□□□ -1.83
ITGB1-202ENST00000396033 NEBP20929 6669 aa3.55□□□□□ -1.84
ITGB1-202ENST00000396033 KRTAP9-7A8MTY7 169 aa3.54□□□□□ -1.84
ITGB1-202ENST00000396033 KRTAP12-4P60329 112 aa3.54□□□□□ -1.84
ITGB1-202ENST00000396033 SYNE1Q8NF91 8797 aaKnown RBP3.49□□□□□ -1.85
ITGB1-202ENST00000396033 KRTAP4-9Q9BYQ8 210 aa3.47□□□□□ -1.85
ITGB1-202ENST00000396033 KRTAP9-4Q9BYQ2 154 aa3.42□□□□□ -1.86
ITGB1-202ENST00000396033 KRTAP5-4Q6L8H1 288 aa3.34□□□□□ -1.87
ITGB1-202ENST00000396033 LCE3DQ9BYE3 92 aa3.31□□□□□ -1.88
ITGB1-202ENST00000396033 KRTAP6-2Q3LI66 62 aa3.3□□□□□ -1.88
ITGB1-202ENST00000396033 MT3P25713 68 aa3.27□□□□□ -1.89
ITGB1-202ENST00000396033 LCE3EQ5T5B0 92 aa3.24□□□□□ -1.89
ITGB1-202ENST00000396033 MT4P47944 62 aa3.24□□□□□ -1.89
ITGB1-202ENST00000396033 LCE4AQ5TA78 99 aa3.24□□□□□ -1.89
ITGB1-202ENST00000396033 KRTAP4-6Q9BYQ5 205 aa3.22□□□□□ -1.89
ITGB1-202ENST00000396033 PRM1P04553 51 aa3.21□□□□□ -1.9
ITGB1-202ENST00000396033 KRTAP2-2Q9BYT5 123 aa3.21□□□□□ -1.9
ITGB1-202ENST00000396033 OBSCNQ5VST9 7968 aa3.18□□□□□ -1.9
ITGB1-202ENST00000396033 KRTAP20-1Q3LI63 56 aa3.16□□□□□ -1.9
ITGB1-202ENST00000396033 KRTAP20-2Q3LI61 65 aa3.15□□□□□ -1.9
ITGB1-202ENST00000396033 HMCN1Q96RW7 5635 aa3.13□□□□□ -1.91
ITGB1-202ENST00000396033 LCE1DQ5T752 114 aa3.11□□□□□ -1.91
ITGB1-202ENST00000396033 KRTAP5-2Q701N4 177 aa3.07□□□□□ -1.92
ITGB1-202ENST00000396033 KRTAP5-3Q6L8H2 238 aa3.01□□□□□ -1.93
ITGB1-202ENST00000396033 LCE1EQ5T753 118 aa2.78□□□□□ -1.96
ITGB1-202ENST00000396033 MUC5ACP98088 5654 aa2.71□□□□□ -1.98
ITGB1-202ENST00000396033 LCE1BQ5T7P3 118 aa2.67□□□□□ -1.98
ITGB1-202ENST00000396033 KRTAP4-11Q9BYQ6 195 aa2.67□□□□□ -1.98
ITGB1-202ENST00000396033 AHNAK2Q8IVF2 5795 aa2.66□□□□□ -1.98
ITGB1-202ENST00000396033 KRTAP5-1Q6L8H4 278 aa2.64□□□□□ -1.99
ITGB1-202ENST00000396033 KRTAP5-10Q6L8G5 202 aa2.61□□□□□ -1.99
ITGB1-202ENST00000396033 KRTAP4-2Q9BYR5 136 aa2.59□□□□□ -1.99
ITGB1-202ENST00000396033 LCE1CQ5T751 118 aa2.58□□□□□ -2
ITGB1-202ENST00000396033 KRTAP5-8O75690 187 aa2.56□□□□□ -2
ITGB1-202ENST00000396033 KRTAP5-7Q6L8G8 165 aa2.49□□□□□ -2.01
ITGB1-202ENST00000396033 GPR98Q8WXG9 6306 aa2.44□□□□□ -2.02
ITGB1-202ENST00000396033 KRTAP4-12Q9BQ66 201 aa2.44□□□□□ -2.02
ITGB1-202ENST00000396033 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.42□□□□□ -2.02
ITGB1-202ENST00000396033 KRTAP21-2Q3LI59 83 aa2.35□□□□□ -2.03
ITGB1-202ENST00000396033 KRTAP9-9Q9BYP9 154 aa2.29□□□□□ -2.04
ITGB1-202ENST00000396033 KRTAP5-11Q6L8G4 156 aa2.26□□□□□ -2.05
ITGB1-202ENST00000396033 MUC5BQ9HC84 5762 aaPredicted RBP2.25□□□□□ -2.05
ITGB1-202ENST00000396033 KRTAP4-4Q9BYR3 166 aa2.13□□□□□ -2.07
ITGB1-202ENST00000396033 LCE1FQ5T754 118 aa2.12□□□□□ -2.07
ITGB1-202ENST00000396033 MUC19Q7Z5P9 8384 aa2.08□□□□□ -2.08
ITGB1-202ENST00000396033 KRTAP21-1Q3LI58 79 aa2.07□□□□□ -2.08
ITGB1-202ENST00000396033 AHNAKQ09666 5890 aaKnown RBP1.99□□□□□ -2.09
ITGB1-202ENST00000396033 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
ITGB1-202ENST00000396033 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 11.4 ms