RNA–Protein interactions for RNA: ENST00000378078.4

RGP1-201, Transcript of RGP1 homolog, RAB6A GEF complex partner 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RGP1, Length 7,018 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGP1-201ENST00000378078 LCE1CQ5T751 118 aa4.84□□□□□ -1.63
RGP1-201ENST00000378078 LCE1EQ5T753 118 aa4.84□□□□□ -1.63
RGP1-201ENST00000378078 LCE1FQ5T754 118 aa4.84□□□□□ -1.63
RGP1-201ENST00000378078 LCE1AQ5T7P2 110 aa4.84□□□□□ -1.63
RGP1-201ENST00000378078 KRTAP9-6A0A140TA67 174 aa4.83□□□□□ -1.64
RGP1-201ENST00000378078 MUC17Q685J3 4493 aa4.81□□□□□ -1.64
RGP1-201ENST00000378078 RYR2Q92736 4967 aa4.7□□□□□ -1.66
RGP1-201ENST00000378078 HERC1Q15751 4861 aa4.7□□□□□ -1.66
RGP1-201ENST00000378078 KMT2CQ8NEZ4 4911 aaKnown RBP4.69□□□□□ -1.66
RGP1-201ENST00000378078 HERC2O95714 4834 aa4.65□□□□□ -1.67
RGP1-201ENST00000378078 KRTAP19-2Q3LHN2 52 aa4.63□□□□□ -1.67
RGP1-201ENST00000378078 KRTAP9-7A8MTY7 169 aa4.6□□□□□ -1.67
RGP1-201ENST00000378078 KIAA1109Q2LD37 5005 aa4.58□□□□□ -1.68
RGP1-201ENST00000378078 FSIP2Q5CZC0 6907 aa4.55□□□□□ -1.68
RGP1-201ENST00000378078 KRTAP6-2Q3LI66 62 aa4.55□□□□□ -1.68
RGP1-201ENST00000378078 KRTAP2-3P0C7H8 128 aa4.54□□□□□ -1.68
RGP1-201ENST00000378078 KRTAP2-4Q9BYR9 128 aa4.54□□□□□ -1.68
RGP1-201ENST00000378078 KRTAP2-1Q9BYU5 128 aa4.54□□□□□ -1.68
RGP1-201ENST00000378078 MT1AP04731 61 aa4.47□□□□□ -1.69
RGP1-201ENST00000378078 PCLOQ9Y6V0 5065 aa4.46□□□□□ -1.7
RGP1-201ENST00000378078 BIRC6Q9NR09 4857 aa4.46□□□□□ -1.7
RGP1-201ENST00000378078 KRTAP6-1Q3LI64 71 aa4.43□□□□□ -1.7
RGP1-201ENST00000378078 LCE4AQ5TA78 99 aa4.37□□□□□ -1.71
RGP1-201ENST00000378078 KRTAP19-7Q3SYF9 63 aa4.35□□□□□ -1.71
RGP1-201ENST00000378078 KRTAP9-4Q9BYQ2 154 aa4.29□□□□□ -1.72
RGP1-201ENST00000378078 EPPK1P58107 5090 aaKnown RBP4.27□□□□□ -1.73
RGP1-201ENST00000378078 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.27□□□□□ -1.73
RGP1-201ENST00000378078 HMCN2Q8NDA2 5059 aa4.24□□□□□ -1.73
RGP1-201ENST00000378078 LCE2AQ5TA79 106 aaPredicted RBP4.23□□□□□ -1.73
RGP1-201ENST00000378078 KRTAP6-3Q3LI67 103 aa4.18□□□□□ -1.74
RGP1-201ENST00000378078 KRTAP2-2Q9BYT5 123 aa4.18□□□□□ -1.74
RGP1-201ENST00000378078 KRTAP9-9Q9BYP9 154 aa4.11□□□□□ -1.75
RGP1-201ENST00000378078 FAT4Q6V0I7 4981 aa4.09□□□□□ -1.75
RGP1-201ENST00000378078 KRTAP9-6A8MVA2 160 aa4.05□□□□□ -1.76
RGP1-201ENST00000378078 MUC2Q02817 5179 aa4.02□□□□□ -1.77
RGP1-201ENST00000378078 KRTAP20-2Q3LI61 65 aa4.02□□□□□ -1.77
RGP1-201ENST00000378078 KRTAP4-11Q9BYQ6 195 aa3.97□□□□□ -1.77
RGP1-201ENST00000378078 KRTAP4-6Q9BYQ5 205 aa3.91□□□□□ -1.78
RGP1-201ENST00000378078 ABCA13Q86UQ4 5058 aa3.91□□□□□ -1.78
RGP1-201ENST00000378078 KRTAP4-4Q9BYR3 166 aa3.91□□□□□ -1.78
RGP1-201ENST00000378078 UBR4Q5T4S7 5183 aa3.9□□□□□ -1.79
RGP1-201ENST00000378078 KRTAP4-12Q9BQ66 201 aa3.85□□□□□ -1.79
RGP1-201ENST00000378078 KRTAP4-2Q9BYR5 136 aa3.85□□□□□ -1.79
RGP1-201ENST00000378078 KMT2DO14686 5537 aa3.83□□□□□ -1.8
RGP1-201ENST00000378078 RNF213Q63HN8 5207 aa3.8□□□□□ -1.8
RGP1-201ENST00000378078 SYNE1Q8NF91 8797 aaKnown RBP3.76□□□□□ -1.81
RGP1-201ENST00000378078 OBSCNQ5VST9 7968 aa3.63□□□□□ -1.83
RGP1-201ENST00000378078 MACF1Q9UPN3 7388 aaKnown RBP3.55□□□□□ -1.84
RGP1-201ENST00000378078 DSTQ03001 7570 aaKnown RBP3.49□□□□□ -1.85
RGP1-201ENST00000378078 FCGBPQ9Y6R7 5405 aaPredicted RBP3.4□□□□□ -1.87
RGP1-201ENST00000378078 NEBP20929 6669 aa3.38□□□□□ -1.87
RGP1-201ENST00000378078 SSPOA2VEC9 5147 aa3.29□□□□□ -1.88
RGP1-201ENST00000378078 USH2AO75445 5202 aa3.23□□□□□ -1.89
RGP1-201ENST00000378078 KRTAP5-9P26371 169 aa3.23□□□□□ -1.89
RGP1-201ENST00000378078 KRTAP5-4Q6L8H1 288 aa3.08□□□□□ -1.92
RGP1-201ENST00000378078 MUC19Q7Z5P9 8384 aa3.07□□□□□ -1.92
RGP1-201ENST00000378078 MUC12Q9UKN1 5478 aa3.03□□□□□ -1.92
RGP1-201ENST00000378078 KRTAP5-5Q701N2 237 aaPredicted RBP2.99□□□□□ -1.93
RGP1-201ENST00000378078 PHGR1C9JFL3 82 aa2.83□□□□□ -1.96
RGP1-201ENST00000378078 GPR98Q8WXG9 6306 aa2.8□□□□□ -1.96
RGP1-201ENST00000378078 KRTAP5-3Q6L8H2 238 aa2.72□□□□□ -1.97
RGP1-201ENST00000378078 KRTAP5-8O75690 187 aa2.62□□□□□ -1.99
RGP1-201ENST00000378078 MDN1Q9NU22 5596 aa2.59□□□□□ -1.99
RGP1-201ENST00000378078 MUC5ACP98088 5654 aa2.46□□□□□ -2.01
RGP1-201ENST00000378078 KRTAP5-2Q701N4 177 aa2.4□□□□□ -2.03
RGP1-201ENST00000378078 KRTAP5-10Q6L8G5 202 aa2.32□□□□□ -2.04
RGP1-201ENST00000378078 HMCN1Q96RW7 5635 aa2.31□□□□□ -2.04
RGP1-201ENST00000378078 KRTAP5-1Q6L8H4 278 aa2.19□□□□□ -2.06
RGP1-201ENST00000378078 AHNAK2Q8IVF2 5795 aa2.07□□□□□ -2.08
RGP1-201ENST00000378078 MUC5BQ9HC84 5762 aaPredicted RBP2.04□□□□□ -2.08
RGP1-201ENST00000378078 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
RGP1-201ENST00000378078 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
RGP1-201ENST00000378078 KRTAP21-1Q3LI58 79 aa1.87□□□□□ -2.11
RGP1-201ENST00000378078 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.75□□□□□ -2.13
RGP1-201ENST00000378078 AHNAKQ09666 5890 aaKnown RBP1.74□□□□□ -2.13
RGP1-201ENST00000378078 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
RGP1-201ENST00000378078 KRTAP5-7Q6L8G8 165 aa1.58□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 153.2 ms