RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 CRCT1Q9UGL9 99 aa5.2□□□□□ -1.58
CKAP4-201ENST00000378026 MUC12Q9UKN1 5478 aa5.16□□□□□ -1.58
CKAP4-201ENST00000378026 MT1GP13640 62 aa5.15□□□□□ -1.59
CKAP4-201ENST00000378026 KRTAP12-4P60329 112 aa5.15□□□□□ -1.59
CKAP4-201ENST00000378026 FCGBPQ9Y6R7 5405 aaPredicted RBP5.12□□□□□ -1.59
CKAP4-201ENST00000378026 SSPOA2VEC9 5147 aa5.1□□□□□ -1.59
CKAP4-201ENST00000378026 KRTAP19-4Q3LI73 84 aa5.07□□□□□ -1.6
CKAP4-201ENST00000378026 LCE2AQ5TA79 106 aaPredicted RBP5.03□□□□□ -1.6
CKAP4-201ENST00000378026 SYNE1Q8NF91 8797 aaKnown RBP4.96□□□□□ -1.61
CKAP4-201ENST00000378026 KRTAP4-9Q9BYQ8 210 aa4.9□□□□□ -1.62
CKAP4-201ENST00000378026 MT1MQ8N339 61 aa4.9□□□□□ -1.63
CKAP4-201ENST00000378026 LCE3BQ5TA77 95 aa4.88□□□□□ -1.63
CKAP4-201ENST00000378026 OBSCNQ5VST9 7968 aa4.85□□□□□ -1.63
CKAP4-201ENST00000378026 KRTAP19-3Q7Z4W3 81 aa4.82□□□□□ -1.64
CKAP4-201ENST00000378026 KRTAP19-6Q3LI70 58 aa4.71□□□□□ -1.65
CKAP4-201ENST00000378026 SYNE2Q8WXH0 6885 aaKnown RBP4.69□□□□□ -1.66
CKAP4-201ENST00000378026 KRTAP9-2Q9BYQ4 174 aa4.67□□□□□ -1.66
CKAP4-201ENST00000378026 KRTAP9-7A8MTY7 169 aa4.66□□□□□ -1.66
CKAP4-201ENST00000378026 KRTAP4-6Q9BYQ5 205 aa4.66□□□□□ -1.66
CKAP4-201ENST00000378026 PRM1P04553 51 aa4.61□□□□□ -1.67
CKAP4-201ENST00000378026 SPRR2FQ96RM1 72 aa4.6□□□□□ -1.67
CKAP4-201ENST00000378026 LCE3DQ9BYE3 92 aa4.6□□□□□ -1.67
CKAP4-201ENST00000378026 KRTAP6-1Q3LI64 71 aa4.59□□□□□ -1.68
CKAP4-201ENST00000378026 LCE5AQ5TCM9 118 aa4.57□□□□□ -1.68
CKAP4-201ENST00000378026 LCE3EQ5T5B0 92 aa4.56□□□□□ -1.68
CKAP4-201ENST00000378026 MDN1Q9NU22 5596 aa4.54□□□□□ -1.68
CKAP4-201ENST00000378026 MT1AP04731 61 aa4.54□□□□□ -1.68
CKAP4-201ENST00000378026 MACF1Q9UPN3 7388 aaKnown RBP4.53□□□□□ -1.68
CKAP4-201ENST00000378026 KRTAP5-5Q701N2 237 aaPredicted RBP4.53□□□□□ -1.68
CKAP4-201ENST00000378026 KRTAP6-2Q3LI66 62 aa4.33□□□□□ -1.72
CKAP4-201ENST00000378026 KRTAP9-6A0A140TA67 174 aa4.22□□□□□ -1.73
CKAP4-201ENST00000378026 HMCN1Q96RW7 5635 aa4.21□□□□□ -1.74
CKAP4-201ENST00000378026 KRTAP6-3Q3LI67 103 aa4.18□□□□□ -1.74
CKAP4-201ENST00000378026 KRTAP9-4Q9BYQ2 154 aa4.12□□□□□ -1.75
CKAP4-201ENST00000378026 LCE1AQ5T7P2 110 aa4.1□□□□□ -1.75
CKAP4-201ENST00000378026 KRTAP2-2Q9BYT5 123 aa4.04□□□□□ -1.76
CKAP4-201ENST00000378026 SPRR2EP22531 72 aa4.03□□□□□ -1.76
CKAP4-201ENST00000378026 SPRR2BP35325 72 aa4.03□□□□□ -1.76
CKAP4-201ENST00000378026 SPRR2AP35326 72 aa4.03□□□□□ -1.76
CKAP4-201ENST00000378026 MT3P25713 68 aa3.96□□□□□ -1.78
CKAP4-201ENST00000378026 KRTAP5-9P26371 169 aa3.85□□□□□ -1.79
CKAP4-201ENST00000378026 SPRR2DP22532 72 aa3.81□□□□□ -1.8
CKAP4-201ENST00000378026 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.81□□□□□ -1.8
CKAP4-201ENST00000378026 KRTAP4-12Q9BQ66 201 aa3.74□□□□□ -1.81
CKAP4-201ENST00000378026 LCE1EQ5T753 118 aa3.72□□□□□ -1.81
CKAP4-201ENST00000378026 KRTAP9-9Q9BYP9 154 aa3.66□□□□□ -1.82
CKAP4-201ENST00000378026 LCE1DQ5T752 114 aa3.64□□□□□ -1.83
CKAP4-201ENST00000378026 MT4P47944 62 aa3.51□□□□□ -1.85
CKAP4-201ENST00000378026 KRTAP4-11Q9BYQ6 195 aa3.5□□□□□ -1.85
CKAP4-201ENST00000378026 KRTAP4-2Q9BYR5 136 aa3.5□□□□□ -1.85
CKAP4-201ENST00000378026 MUC5ACP98088 5654 aa3.49□□□□□ -1.85
CKAP4-201ENST00000378026 KRTAP5-3Q6L8H2 238 aa3.43□□□□□ -1.86
CKAP4-201ENST00000378026 KRTAP5-4Q6L8H1 288 aa3.42□□□□□ -1.86
CKAP4-201ENST00000378026 KRTAP20-1Q3LI63 56 aa3.34□□□□□ -1.87
CKAP4-201ENST00000378026 NEBP20929 6669 aa3.34□□□□□ -1.88
CKAP4-201ENST00000378026 LCE1BQ5T7P3 118 aa3.33□□□□□ -1.88
CKAP4-201ENST00000378026 KRTAP20-2Q3LI61 65 aa3.33□□□□□ -1.88
CKAP4-201ENST00000378026 MUC5BQ9HC84 5762 aaPredicted RBP3.3□□□□□ -1.88
CKAP4-201ENST00000378026 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
CKAP4-201ENST00000378026 KRTAP5-2Q701N4 177 aa3.27□□□□□ -1.89
CKAP4-201ENST00000378026 MUC19Q7Z5P9 8384 aa3.14□□□□□ -1.91
CKAP4-201ENST00000378026 LCE4AQ5TA78 99 aa3.1□□□□□ -1.91
CKAP4-201ENST00000378026 KRTAP5-1Q6L8H4 278 aa3.08□□□□□ -1.92
CKAP4-201ENST00000378026 LCE1CQ5T751 118 aa2.89□□□□□ -1.95
CKAP4-201ENST00000378026 KRTAP21-2Q3LI59 83 aa2.88□□□□□ -1.95
CKAP4-201ENST00000378026 KRTAP4-4Q9BYR3 166 aa2.87□□□□□ -1.95
CKAP4-201ENST00000378026 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
CKAP4-201ENST00000378026 LCE1FQ5T754 118 aa2.76□□□□□ -1.97
CKAP4-201ENST00000378026 GPR98Q8WXG9 6306 aa2.75□□□□□ -1.97
CKAP4-201ENST00000378026 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.67□□□□□ -1.98
CKAP4-201ENST00000378026 KRTAP5-7Q6L8G8 165 aa2.6□□□□□ -1.99
CKAP4-201ENST00000378026 AHNAK2Q8IVF2 5795 aa2.6□□□□□ -1.99
CKAP4-201ENST00000378026 KRTAP5-8O75690 187 aa2.49□□□□□ -2.01
CKAP4-201ENST00000378026 KRTAP5-11Q6L8G4 156 aa2.42□□□□□ -2.02
CKAP4-201ENST00000378026 AHNAKQ09666 5890 aaKnown RBP2.29□□□□□ -2.04
CKAP4-201ENST00000378026 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
CKAP4-201ENST00000378026 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 103.5 ms