RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 KRTAP19-3Q7Z4W3 81 aa4.9□□□□□ -1.62
TCOF1-202ENST00000377797 KRTAP19-7Q3SYF9 63 aa4.83□□□□□ -1.64
TCOF1-202ENST00000377797 SPRR2DP22532 72 aa4.81□□□□□ -1.64
TCOF1-202ENST00000377797 LCE3BQ5TA77 95 aa4.75□□□□□ -1.65
TCOF1-202ENST00000377797 USH2AO75445 5202 aa4.75□□□□□ -1.65
TCOF1-202ENST00000377797 MT1MQ8N339 61 aa4.74□□□□□ -1.65
TCOF1-202ENST00000377797 SYNE1Q8NF91 8797 aaKnown RBP4.73□□□□□ -1.65
TCOF1-202ENST00000377797 KRTAP4-3Q9BYR4 195 aa4.68□□□□□ -1.66
TCOF1-202ENST00000377797 KRTAP12-4P60329 112 aa4.66□□□□□ -1.66
TCOF1-202ENST00000377797 LOC100996750A0A140TA64 210 aa4.61□□□□□ -1.67
TCOF1-202ENST00000377797 KRTAP9-6A0A140TA67 174 aa4.55□□□□□ -1.68
TCOF1-202ENST00000377797 KMT2DO14686 5537 aa4.52□□□□□ -1.69
TCOF1-202ENST00000377797 DSTQ03001 7570 aaKnown RBP4.46□□□□□ -1.7
TCOF1-202ENST00000377797 FCGBPQ9Y6R7 5405 aaPredicted RBP4.43□□□□□ -1.7
TCOF1-202ENST00000377797 KRTAP9-6A8MVA2 160 aa4.43□□□□□ -1.7
TCOF1-202ENST00000377797 SSPOA2VEC9 5147 aa4.43□□□□□ -1.7
TCOF1-202ENST00000377797 LCE3DQ9BYE3 92 aa4.42□□□□□ -1.7
TCOF1-202ENST00000377797 LCE5AQ5TCM9 118 aa4.38□□□□□ -1.71
TCOF1-202ENST00000377797 OBSCNQ5VST9 7968 aa4.37□□□□□ -1.71
TCOF1-202ENST00000377797 SYNE2Q8WXH0 6885 aaKnown RBP4.36□□□□□ -1.71
TCOF1-202ENST00000377797 LCE3EQ5T5B0 92 aa4.35□□□□□ -1.71
TCOF1-202ENST00000377797 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.33□□□□□ -1.72
TCOF1-202ENST00000377797 KRTAP6-3Q3LI67 103 aa4.33□□□□□ -1.72
TCOF1-202ENST00000377797 LCE1AQ5T7P2 110 aa4.33□□□□□ -1.72
TCOF1-202ENST00000377797 MT1AP04731 61 aa4.3□□□□□ -1.72
TCOF1-202ENST00000377797 KRTAP2-3P0C7H8 128 aa4.3□□□□□ -1.72
TCOF1-202ENST00000377797 KRTAP2-4Q9BYR9 128 aa4.3□□□□□ -1.72
TCOF1-202ENST00000377797 KRTAP2-1Q9BYU5 128 aa4.3□□□□□ -1.72
TCOF1-202ENST00000377797 MUC12Q9UKN1 5478 aa4.29□□□□□ -1.72
TCOF1-202ENST00000377797 MACF1Q9UPN3 7388 aaKnown RBP4.29□□□□□ -1.72
TCOF1-202ENST00000377797 KRTAP9-7A8MTY7 169 aa4.29□□□□□ -1.72
TCOF1-202ENST00000377797 MT4P47944 62 aa4.28□□□□□ -1.72
TCOF1-202ENST00000377797 MT3P25713 68 aa4.26□□□□□ -1.73
TCOF1-202ENST00000377797 KRTAP6-1Q3LI64 71 aa4.16□□□□□ -1.74
TCOF1-202ENST00000377797 KRTAP4-9Q9BYQ8 210 aa4.16□□□□□ -1.74
TCOF1-202ENST00000377797 PRM1P04553 51 aa4.1□□□□□ -1.75
TCOF1-202ENST00000377797 KRTAP5-9P26371 169 aa4.07□□□□□ -1.76
TCOF1-202ENST00000377797 KRTAP20-1Q3LI63 56 aa4.02□□□□□ -1.77
TCOF1-202ENST00000377797 KRTAP9-4Q9BYQ2 154 aa3.98□□□□□ -1.77
TCOF1-202ENST00000377797 KRTAP6-2Q3LI66 62 aa3.98□□□□□ -1.77
TCOF1-202ENST00000377797 KRTAP2-2Q9BYT5 123 aa3.93□□□□□ -1.78
TCOF1-202ENST00000377797 LCE1DQ5T752 114 aa3.92□□□□□ -1.78
TCOF1-202ENST00000377797 MDN1Q9NU22 5596 aa3.91□□□□□ -1.78
TCOF1-202ENST00000377797 LCE4AQ5TA78 99 aa3.9□□□□□ -1.78
TCOF1-202ENST00000377797 LCE1BQ5T7P3 118 aa3.86□□□□□ -1.79
TCOF1-202ENST00000377797 NEBP20929 6669 aa3.74□□□□□ -1.81
TCOF1-202ENST00000377797 KRTAP4-6Q9BYQ5 205 aa3.64□□□□□ -1.83
TCOF1-202ENST00000377797 KRTAP20-2Q3LI61 65 aa3.54□□□□□ -1.84
TCOF1-202ENST00000377797 KRTAP5-5Q701N2 237 aaPredicted RBP3.52□□□□□ -1.85
TCOF1-202ENST00000377797 KRTAP5-4Q6L8H1 288 aa3.31□□□□□ -1.88
TCOF1-202ENST00000377797 LCE1EQ5T753 118 aa3.28□□□□□ -1.88
TCOF1-202ENST00000377797 MUC19Q7Z5P9 8384 aa3.21□□□□□ -1.9
TCOF1-202ENST00000377797 GPR98Q8WXG9 6306 aa3.17□□□□□ -1.9
TCOF1-202ENST00000377797 KRTAP9-9Q9BYP9 154 aa3.14□□□□□ -1.91
TCOF1-202ENST00000377797 KRTAP4-11Q9BYQ6 195 aa3.14□□□□□ -1.91
TCOF1-202ENST00000377797 MUC5ACP98088 5654 aa3.09□□□□□ -1.91
TCOF1-202ENST00000377797 HMCN1Q96RW7 5635 aa3.08□□□□□ -1.92
TCOF1-202ENST00000377797 LCE1CQ5T751 118 aa3.07□□□□□ -1.92
TCOF1-202ENST00000377797 LCE1FQ5T754 118 aa3.07□□□□□ -1.92
TCOF1-202ENST00000377797 KRTAP5-3Q6L8H2 238 aa2.96□□□□□ -1.93
TCOF1-202ENST00000377797 KRTAP5-2Q701N4 177 aa2.95□□□□□ -1.94
TCOF1-202ENST00000377797 KRTAP4-12Q9BQ66 201 aa2.86□□□□□ -1.95
TCOF1-202ENST00000377797 KRTAP4-2Q9BYR5 136 aa2.86□□□□□ -1.95
TCOF1-202ENST00000377797 KRTAP4-4Q9BYR3 166 aa2.84□□□□□ -1.95
TCOF1-202ENST00000377797 AHNAK2Q8IVF2 5795 aa2.79□□□□□ -1.96
TCOF1-202ENST00000377797 KRTAP5-8O75690 187 aa2.73□□□□□ -1.97
TCOF1-202ENST00000377797 KRTAP5-10Q6L8G5 202 aa2.61□□□□□ -1.99
TCOF1-202ENST00000377797 KRTAP5-1Q6L8H4 278 aa2.6□□□□□ -1.99
TCOF1-202ENST00000377797 KRTAP5-11Q6L8G4 156 aa2.41□□□□□ -2.02
TCOF1-202ENST00000377797 MUC5BQ9HC84 5762 aaPredicted RBP2.38□□□□□ -2.03
TCOF1-202ENST00000377797 KRTAP21-2Q3LI59 83 aa2.38□□□□□ -2.03
TCOF1-202ENST00000377797 AHNAKQ09666 5890 aaKnown RBP2.35□□□□□ -2.03
TCOF1-202ENST00000377797 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.31□□□□□ -2.04
TCOF1-202ENST00000377797 KRTAP5-7Q6L8G8 165 aa2.23□□□□□ -2.05
TCOF1-202ENST00000377797 PHGR1C9JFL3 82 aa2.03□□□□□ -2.08
TCOF1-202ENST00000377797 KRTAP21-1Q3LI58 79 aa1.98□□□□□ -2.09
TCOF1-202ENST00000377797 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 75.9 ms