RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 CRCT1Q9UGL9 99 aa8.66□□□□□ -1.02
C9orf40-201ENST00000376854 KRTAP2-3P0C7H8 128 aa8.64□□□□□ -1.03
C9orf40-201ENST00000376854 KRTAP2-4Q9BYR9 128 aa8.64□□□□□ -1.03
C9orf40-201ENST00000376854 KRTAP2-1Q9BYU5 128 aa8.64□□□□□ -1.03
C9orf40-201ENST00000376854 FCGBPQ9Y6R7 5405 aaPredicted RBP8.49□□□□□ -1.05
C9orf40-201ENST00000376854 MUC12Q9UKN1 5478 aa8.4□□□□□ -1.06
C9orf40-201ENST00000376854 KRTAP4-3Q9BYR4 195 aa8.3□□□□□ -1.08
C9orf40-201ENST00000376854 LOC100996750A0A140TA64 210 aa8.24□□□□□ -1.09
C9orf40-201ENST00000376854 MT1GP13640 62 aa8.19□□□□□ -1.1
C9orf40-201ENST00000376854 KRTAP19-3Q7Z4W3 81 aa8.18□□□□□ -1.1
C9orf40-201ENST00000376854 MT1MQ8N339 61 aa8.18□□□□□ -1.1
C9orf40-201ENST00000376854 MACF1Q9UPN3 7388 aaKnown RBP8.08□□□□□ -1.12
C9orf40-201ENST00000376854 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.06□□□□□ -1.12
C9orf40-201ENST00000376854 SPRR2FQ96RM1 72 aa8.01□□□□□ -1.13
C9orf40-201ENST00000376854 DSTQ03001 7570 aaKnown RBP7.94□□□□□ -1.14
C9orf40-201ENST00000376854 LCE5AQ5TCM9 118 aa7.93□□□□□ -1.14
C9orf40-201ENST00000376854 SYNE2Q8WXH0 6885 aaKnown RBP7.86□□□□□ -1.15
C9orf40-201ENST00000376854 KRTAP9-7A8MTY7 169 aa7.85□□□□□ -1.15
C9orf40-201ENST00000376854 MDN1Q9NU22 5596 aa7.73□□□□□ -1.17
C9orf40-201ENST00000376854 KRTAP6-3Q3LI67 103 aa7.72□□□□□ -1.17
C9orf40-201ENST00000376854 KRTAP12-4P60329 112 aa7.65□□□□□ -1.18
C9orf40-201ENST00000376854 LCE3BQ5TA77 95 aa7.57□□□□□ -1.2
C9orf40-201ENST00000376854 KRTAP5-9P26371 169 aa7.51□□□□□ -1.21
C9orf40-201ENST00000376854 LCE1AQ5T7P2 110 aa7.51□□□□□ -1.21
C9orf40-201ENST00000376854 KRTAP6-1Q3LI64 71 aa7.43□□□□□ -1.22
C9orf40-201ENST00000376854 KRTAP4-9Q9BYQ8 210 aa7.41□□□□□ -1.22
C9orf40-201ENST00000376854 MT1AP04731 61 aa7.36□□□□□ -1.23
C9orf40-201ENST00000376854 SPRR2EP22531 72 aa7.34□□□□□ -1.23
C9orf40-201ENST00000376854 SPRR2BP35325 72 aa7.34□□□□□ -1.23
C9orf40-201ENST00000376854 SPRR2AP35326 72 aa7.34□□□□□ -1.23
C9orf40-201ENST00000376854 NEBP20929 6669 aa7.29□□□□□ -1.24
C9orf40-201ENST00000376854 SYNE1Q8NF91 8797 aaKnown RBP7.29□□□□□ -1.24
C9orf40-201ENST00000376854 KRTAP5-5Q701N2 237 aaPredicted RBP7.23□□□□□ -1.25
C9orf40-201ENST00000376854 LCE3DQ9BYE3 92 aa7.16□□□□□ -1.26
C9orf40-201ENST00000376854 LCE3EQ5T5B0 92 aa7.07□□□□□ -1.28
C9orf40-201ENST00000376854 SPRR2DP22532 72 aa7.02□□□□□ -1.28
C9orf40-201ENST00000376854 KRTAP20-1Q3LI63 56 aa6.93□□□□□ -1.3
C9orf40-201ENST00000376854 KRTAP9-4Q9BYQ2 154 aa6.93□□□□□ -1.3
C9orf40-201ENST00000376854 PRM1P04553 51 aa6.77□□□□□ -1.33
C9orf40-201ENST00000376854 KRTAP2-2Q9BYT5 123 aa6.67□□□□□ -1.34
C9orf40-201ENST00000376854 KRTAP6-2Q3LI66 62 aa6.66□□□□□ -1.34
C9orf40-201ENST00000376854 MT3P25713 68 aa6.61□□□□□ -1.35
C9orf40-201ENST00000376854 OBSCNQ5VST9 7968 aa6.53□□□□□ -1.36
C9orf40-201ENST00000376854 KRTAP5-4Q6L8H1 288 aa6.45□□□□□ -1.38
C9orf40-201ENST00000376854 KRTAP4-6Q9BYQ5 205 aa6.28□□□□□ -1.4
C9orf40-201ENST00000376854 MT4P47944 62 aa6.22□□□□□ -1.41
C9orf40-201ENST00000376854 LCE4AQ5TA78 99 aa6.17□□□□□ -1.42
C9orf40-201ENST00000376854 KRTAP20-2Q3LI61 65 aa6.08□□□□□ -1.44
C9orf40-201ENST00000376854 HMCN1Q96RW7 5635 aa6.06□□□□□ -1.44
C9orf40-201ENST00000376854 KRTAP5-2Q701N4 177 aa5.99□□□□□ -1.45
C9orf40-201ENST00000376854 LCE1DQ5T752 114 aa5.97□□□□□ -1.45
C9orf40-201ENST00000376854 KRTAP5-3Q6L8H2 238 aa5.8□□□□□ -1.48
C9orf40-201ENST00000376854 MUC5ACP98088 5654 aa5.6□□□□□ -1.51
C9orf40-201ENST00000376854 GPR98Q8WXG9 6306 aa5.56□□□□□ -1.52
C9orf40-201ENST00000376854 AHNAK2Q8IVF2 5795 aa5.51□□□□□ -1.53
C9orf40-201ENST00000376854 KRTAP5-10Q6L8G5 202 aa5.43□□□□□ -1.54
C9orf40-201ENST00000376854 LCE1EQ5T753 118 aa5.39□□□□□ -1.55
C9orf40-201ENST00000376854 LCE1BQ5T7P3 118 aa5.35□□□□□ -1.55
C9orf40-201ENST00000376854 KRTAP5-7Q6L8G8 165 aa5.22□□□□□ -1.57
C9orf40-201ENST00000376854 KRTAP5-1Q6L8H4 278 aa5.17□□□□□ -1.58
C9orf40-201ENST00000376854 KRTAP4-2Q9BYR5 136 aa5.15□□□□□ -1.58
C9orf40-201ENST00000376854 KRTAP4-11Q9BYQ6 195 aa5.11□□□□□ -1.59
C9orf40-201ENST00000376854 LCE1CQ5T751 118 aa5.09□□□□□ -1.59
C9orf40-201ENST00000376854 KRTAP5-8O75690 187 aa4.95□□□□□ -1.62
C9orf40-201ENST00000376854 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.81□□□□□ -1.64
C9orf40-201ENST00000376854 KRTAP21-2Q3LI59 83 aa4.79□□□□□ -1.64
C9orf40-201ENST00000376854 KRTAP9-9Q9BYP9 154 aa4.61□□□□□ -1.67
C9orf40-201ENST00000376854 AHNAKQ09666 5890 aaKnown RBP4.46□□□□□ -1.7
C9orf40-201ENST00000376854 MUC5BQ9HC84 5762 aaPredicted RBP4.44□□□□□ -1.7
C9orf40-201ENST00000376854 KRTAP4-4Q9BYR3 166 aa4.41□□□□□ -1.7
C9orf40-201ENST00000376854 KRTAP5-11Q6L8G4 156 aa4.39□□□□□ -1.71
C9orf40-201ENST00000376854 KRTAP4-12Q9BQ66 201 aa4.26□□□□□ -1.73
C9orf40-201ENST00000376854 KRTAP21-1Q3LI58 79 aa4.25□□□□□ -1.73
C9orf40-201ENST00000376854 MUC19Q7Z5P9 8384 aa4.04□□□□□ -1.76
C9orf40-201ENST00000376854 LCE1FQ5T754 118 aa3.86□□□□□ -1.79
C9orf40-201ENST00000376854 PHGR1C9JFL3 82 aa3.81□□□□□ -1.8
C9orf40-201ENST00000376854 MUC16Q8WXI7 14507 aa2.52□□□□□ -2.01
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms