RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 KRTAP4-8A0A0G2JLE6 195 aa2.84□□□□□ -1.96
USP48-203ENST00000374732 KRTAP10-5P60370 271 aa2.83□□□□□ -1.96
USP48-203ENST00000374732 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
USP48-203ENST00000374732 KRTAP5-9P26371 169 aa2.79□□□□□ -1.96
USP48-203ENST00000374732 MT1BP07438 61 aa2.78□□□□□ -1.96
USP48-203ENST00000374732 KRTAP10-7P60409 375 aaPredicted RBP2.78□□□□□ -1.96
USP48-203ENST00000374732 KRTAP4-7Q9BYR0 210 aa2.78□□□□□ -1.96
USP48-203ENST00000374732 USH2AO75445 5202 aa2.75□□□□□ -1.97
USP48-203ENST00000374732 KRTAP10-12P60413 245 aa2.74□□□□□ -1.97
USP48-203ENST00000374732 MT1XP80297 61 aa2.74□□□□□ -1.97
USP48-203ENST00000374732 KRTAP20-1Q3LI63 56 aa2.73□□□□□ -1.97
USP48-203ENST00000374732 KRTAP8-1Q8IUC2 63 aa2.72□□□□□ -1.97
USP48-203ENST00000374732 LCE3DQ9BYE3 92 aa2.72□□□□□ -1.97
USP48-203ENST00000374732 LCE3AQ5TA76 89 aa2.71□□□□□ -1.98
USP48-203ENST00000374732 KRTAP2-3P0C7H8 128 aa2.7□□□□□ -1.98
USP48-203ENST00000374732 MT3P25713 68 aa2.7□□□□□ -1.98
USP48-203ENST00000374732 KRTAP2-4Q9BYR9 128 aa2.7□□□□□ -1.98
USP48-203ENST00000374732 NEBP20929 6669 aa2.69□□□□□ -1.98
USP48-203ENST00000374732 FCGBPQ9Y6R7 5405 aaPredicted RBP2.67□□□□□ -1.98
USP48-203ENST00000374732 KRTAP4-9Q9BYQ8 210 aa2.66□□□□□ -1.98
USP48-203ENST00000374732 KRTAP2-1Q9BYU5 128 aa2.66□□□□□ -1.98
USP48-203ENST00000374732 KRTAP12-3P60328 96 aa2.62□□□□□ -1.99
USP48-203ENST00000374732 KRTAP4-2Q9BYR5 136 aa2.62□□□□□ -1.99
USP48-203ENST00000374732 KRTAP5-3Q6L8H2 238 aa2.54□□□□□ -2
USP48-203ENST00000374732 KRTAP19-5Q3LI72 72 aa2.51□□□□□ -2.01
USP48-203ENST00000374732 KRTAP4-11Q9BYQ6 195 aa2.49□□□□□ -2.01
USP48-203ENST00000374732 PRM1P04553 51 aa2.48□□□□□ -2.01
USP48-203ENST00000374732 MACF1Q9UPN3 7388 aaKnown RBP2.46□□□□□ -2.02
USP48-203ENST00000374732 GPR98Q8WXG9 6306 aa2.45□□□□□ -2.02
USP48-203ENST00000374732 KRTAP19-7Q3SYF9 63 aa2.44□□□□□ -2.02
USP48-203ENST00000374732 SPRR2EP22531 72 aa2.4□□□□□ -2.03
USP48-203ENST00000374732 SPRR2BP35325 72 aa2.4□□□□□ -2.03
USP48-203ENST00000374732 SPRR2AP35326 72 aa2.4□□□□□ -2.03
USP48-203ENST00000374732 KRTAP9-6A8MVA2 160 aa2.39□□□□□ -2.03
USP48-203ENST00000374732 MT1EP04732 61 aa2.39□□□□□ -2.03
USP48-203ENST00000374732 MT1LQ93083 61 aa2.37□□□□□ -2.03
USP48-203ENST00000374732 SPRR2DP22532 72 aa2.36□□□□□ -2.03
USP48-203ENST00000374732 FSIP2Q5CZC0 6907 aa2.33□□□□□ -2.04
USP48-203ENST00000374732 SPRR2FQ96RM1 72 aa2.31□□□□□ -2.04
USP48-203ENST00000374732 KMT2DO14686 5537 aa2.31□□□□□ -2.04
USP48-203ENST00000374732 SYNE2Q8WXH0 6885 aaKnown RBP2.31□□□□□ -2.04
USP48-203ENST00000374732 MUC19Q7Z5P9 8384 aa2.31□□□□□ -2.04
USP48-203ENST00000374732 SYNE1Q8NF91 8797 aaKnown RBP2.31□□□□□ -2.04
USP48-203ENST00000374732 OBSCNQ5VST9 7968 aa2.28□□□□□ -2.04
USP48-203ENST00000374732 MT1GP13640 62 aa2.27□□□□□ -2.05
USP48-203ENST00000374732 MDN1Q9NU22 5596 aa2.27□□□□□ -2.05
USP48-203ENST00000374732 KRTAP5-7Q6L8G8 165 aa2.27□□□□□ -2.05
USP48-203ENST00000374732 KRTAP19-3Q7Z4W3 81 aa2.25□□□□□ -2.05
USP48-203ENST00000374732 KRTAP5-4Q6L8H1 288 aa2.24□□□□□ -2.05
USP48-203ENST00000374732 MT1MQ8N339 61 aa2.23□□□□□ -2.05
USP48-203ENST00000374732 KRTAP5-5Q701N2 237 aaPredicted RBP2.21□□□□□ -2.06
USP48-203ENST00000374732 MUC12Q9UKN1 5478 aa2.21□□□□□ -2.06
USP48-203ENST00000374732 KRTAP5-10Q6L8G5 202 aa2.2□□□□□ -2.06
USP48-203ENST00000374732 HMCN1Q96RW7 5635 aa2.19□□□□□ -2.06
USP48-203ENST00000374732 MUC5BQ9HC84 5762 aaPredicted RBP2.17□□□□□ -2.06
USP48-203ENST00000374732 KRTAP4-3Q9BYR4 195 aa2.15□□□□□ -2.06
USP48-203ENST00000374732 AHNAK2Q8IVF2 5795 aa2.1□□□□□ -2.07
USP48-203ENST00000374732 AHNAKQ09666 5890 aaKnown RBP2.07□□□□□ -2.08
USP48-203ENST00000374732 LCE1CQ5T751 118 aa2.07□□□□□ -2.08
USP48-203ENST00000374732 LCE1BQ5T7P3 118 aa2.07□□□□□ -2.08
USP48-203ENST00000374732 KRTAP6-2Q3LI66 62 aa2.04□□□□□ -2.08
USP48-203ENST00000374732 MT1AP04731 61 aa2.02□□□□□ -2.09
USP48-203ENST00000374732 KRTAP6-1Q3LI64 71 aa1.98□□□□□ -2.09
USP48-203ENST00000374732 KRTAP20-2Q3LI61 65 aa1.96□□□□□ -2.1
USP48-203ENST00000374732 KRTAP5-2Q701N4 177 aa1.95□□□□□ -2.1
USP48-203ENST00000374732 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.11
USP48-203ENST00000374732 DSTQ03001 7570 aaKnown RBP1.88□□□□□ -2.11
USP48-203ENST00000374732 MT4P47944 62 aa1.86□□□□□ -2.11
USP48-203ENST00000374732 KRTAP5-8O75690 187 aa1.85□□□□□ -2.11
USP48-203ENST00000374732 MUC5ACP98088 5654 aa1.78□□□□□ -2.12
USP48-203ENST00000374732 KRTAP5-1Q6L8H4 278 aa1.7□□□□□ -2.14
USP48-203ENST00000374732 KRTAP5-11Q6L8G4 156 aa1.67□□□□□ -2.14
USP48-203ENST00000374732 KRTAP21-1Q3LI58 79 aa1.63□□□□□ -2.15
USP48-203ENST00000374732 KRTAP4-4Q9BYR3 166 aa1.5□□□□□ -2.17
USP48-203ENST00000374732 KRTAP21-2Q3LI59 83 aa1.32□□□□□ -2.2
USP48-203ENST00000374732 PHGR1C9JFL3 82 aa1.17□□□□□ -2.22
USP48-203ENST00000374732 MUC16Q8WXI7 14507 aa0.89□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 93.6 ms