RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 KRTAP10-10P60014 251 aa2.28□□□□□ -2.04
USP48-202ENST00000374730 LINC01554Q52M75 96 aa2.27□□□□□ -2.05
USP48-202ENST00000374730 M0QZ58 72 aa2.26□□□□□ -2.05
USP48-202ENST00000374730 ROMO1P60602 79 aa2.26□□□□□ -2.05
USP48-202ENST00000374730 KRTAP25-1Q3LHN0 102 aa2.26□□□□□ -2.05
USP48-202ENST00000374730 A0A0D9SG42 100 aa2.24□□□□□ -2.05
USP48-202ENST00000374730 KRTAP12-1P59990 96 aa2.23□□□□□ -2.05
USP48-202ENST00000374730 KRTAP4-1Q9BYQ7 146 aa2.23□□□□□ -2.05
USP48-202ENST00000374730 R4GN34 69 aa2.23□□□□□ -2.05
USP48-202ENST00000374730 KRTAP19-2Q3LHN2 52 aa2.22□□□□□ -2.05
USP48-202ENST00000374730 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
USP48-202ENST00000374730 SPRR5A0A1B0GTR4 108 aa2.21□□□□□ -2.06
USP48-202ENST00000374730 KRTAP5-8O75690 187 aa2.21□□□□□ -2.06
USP48-202ENST00000374730 CRCT1Q9UGL9 99 aa2.19□□□□□ -2.06
USP48-202ENST00000374730 CRIPTQ9P021 101 aa2.16□□□□□ -2.06
USP48-202ENST00000374730 KRTAP5-7Q6L8G8 165 aa2.14□□□□□ -2.07
USP48-202ENST00000374730 C10orf95Q9H7T3 257 aa2.13□□□□□ -2.07
USP48-202ENST00000374730 PRO2289Q9P1D8 64 aa2.1□□□□□ -2.07
USP48-202ENST00000374730 SPRR2GQ9BYE4 73 aa2.05□□□□□ -2.08
USP48-202ENST00000374730 SSPOA2VEC9 5147 aa2.05□□□□□ -2.08
USP48-202ENST00000374730 MT1HP80294 61 aa2.04□□□□□ -2.08
USP48-202ENST00000374730 SYNE2Q8WXH0 6885 aaKnown RBP2.01□□□□□ -2.09
USP48-202ENST00000374730 M0R2T5 61 aa2□□□□□ -2.09
USP48-202ENST00000374730 MT2AP02795 61 aa2□□□□□ -2.09
USP48-202ENST00000374730 TNP1P09430 55 aa2□□□□□ -2.09
USP48-202ENST00000374730 USH2AO75445 5202 aa2□□□□□ -2.09
USP48-202ENST00000374730 MT1FP04733 61 aa1.99□□□□□ -2.09
USP48-202ENST00000374730 PLAC4Q8WY50 150 aa1.99□□□□□ -2.09
USP48-202ENST00000374730 NEBP20929 6669 aa1.99□□□□□ -2.09
USP48-202ENST00000374730 FCGBPQ9Y6R7 5405 aaPredicted RBP1.99□□□□□ -2.09
USP48-202ENST00000374730 KRTAP19-8Q3LI54 63 aa1.98□□□□□ -2.09
USP48-202ENST00000374730 GPR98Q8WXG9 6306 aa1.94□□□□□ -2.1
USP48-202ENST00000374730 MT1BP07438 61 aa1.93□□□□□ -2.1
USP48-202ENST00000374730 MACF1Q9UPN3 7388 aaKnown RBP1.93□□□□□ -2.1
USP48-202ENST00000374730 MT1XP80297 61 aa1.9□□□□□ -2.11
USP48-202ENST00000374730 KRTAP8-1Q8IUC2 63 aa1.88□□□□□ -2.11
USP48-202ENST00000374730 MUC12Q9UKN1 5478 aa1.87□□□□□ -2.11
USP48-202ENST00000374730 KRTAP21-2Q3LI59 83 aa1.85□□□□□ -2.11
USP48-202ENST00000374730 KRTAP20-1Q3LI63 56 aa1.83□□□□□ -2.12
USP48-202ENST00000374730 KMT2DO14686 5537 aa1.83□□□□□ -2.12
USP48-202ENST00000374730 KRTAP12-3P60328 96 aa1.81□□□□□ -2.12
USP48-202ENST00000374730 KRTAP12-4P60329 112 aa1.78□□□□□ -2.12
USP48-202ENST00000374730 KRTAP6-3Q3LI67 103 aa1.78□□□□□ -2.12
USP48-202ENST00000374730 MDN1Q9NU22 5596 aa1.77□□□□□ -2.13
USP48-202ENST00000374730 INE1O15225 51 aa1.77□□□□□ -2.13
USP48-202ENST00000374730 KRTAP19-5Q3LI72 72 aa1.74□□□□□ -2.13
USP48-202ENST00000374730 KRTAP19-6Q3LI70 58 aa1.69□□□□□ -2.14
USP48-202ENST00000374730 KRTAP19-7Q3SYF9 63 aa1.69□□□□□ -2.14
USP48-202ENST00000374730 KRTAP2-3P0C7H8 128 aa1.67□□□□□ -2.14
USP48-202ENST00000374730 KRTAP2-4Q9BYR9 128 aa1.67□□□□□ -2.14
USP48-202ENST00000374730 MT1EP04732 61 aa1.65□□□□□ -2.15
USP48-202ENST00000374730 MT1LQ93083 61 aa1.64□□□□□ -2.15
USP48-202ENST00000374730 AHNAK2Q8IVF2 5795 aa1.62□□□□□ -2.15
USP48-202ENST00000374730 HMCN1Q96RW7 5635 aa1.59□□□□□ -2.15
USP48-202ENST00000374730 KRTAP2-1Q9BYU5 128 aa1.59□□□□□ -2.15
USP48-202ENST00000374730 KRTAP19-3Q7Z4W3 81 aa1.56□□□□□ -2.16
USP48-202ENST00000374730 MT1GP13640 62 aa1.55□□□□□ -2.16
USP48-202ENST00000374730 MT1MQ8N339 61 aa1.55□□□□□ -2.16
USP48-202ENST00000374730 DSTQ03001 7570 aaKnown RBP1.52□□□□□ -2.17
USP48-202ENST00000374730 KRTAP5-10Q6L8G5 202 aa1.49□□□□□ -2.17
USP48-202ENST00000374730 SPRR2FQ96RM1 72 aa1.49□□□□□ -2.17
USP48-202ENST00000374730 AHNAKQ09666 5890 aaKnown RBP1.48□□□□□ -2.17
USP48-202ENST00000374730 SPRR2EP22531 72 aa1.46□□□□□ -2.18
USP48-202ENST00000374730 SPRR2BP35325 72 aa1.46□□□□□ -2.18
USP48-202ENST00000374730 SPRR2AP35326 72 aa1.46□□□□□ -2.18
USP48-202ENST00000374730 MUC5BQ9HC84 5762 aaPredicted RBP1.42□□□□□ -2.18
USP48-202ENST00000374730 SYNE1Q8NF91 8797 aaKnown RBP1.41□□□□□ -2.18
USP48-202ENST00000374730 MT1AP04731 61 aa1.4□□□□□ -2.19
USP48-202ENST00000374730 SPRR2DP22532 72 aa1.4□□□□□ -2.19
USP48-202ENST00000374730 MUC5ACP98088 5654 aa1.38□□□□□ -2.19
USP48-202ENST00000374730 KRTAP6-1Q3LI64 71 aa1.38□□□□□ -2.19
USP48-202ENST00000374730 MT4P47944 62 aa1.3□□□□□ -2.2
USP48-202ENST00000374730 KRTAP6-2Q3LI66 62 aa1.23□□□□□ -2.21
USP48-202ENST00000374730 PRM1P04553 51 aa1.19□□□□□ -2.22
USP48-202ENST00000374730 KRTAP20-2Q3LI61 65 aa1.16□□□□□ -2.22
USP48-202ENST00000374730 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
USP48-202ENST00000374730 PHGR1C9JFL3 82 aa0.86□□□□□ -2.27
USP48-202ENST00000374730 KRTAP21-1Q3LI58 79 aa0.77□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 53.2 ms