RNA–Protein interactions for RNA: ENST00000373010.5

USP49-202, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 5 BASIC

Gene USP49, Length 2,446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-202ENST00000373010 KRTAP4-3Q9BYR4 195 aa6.26□□□□□ -1.41
USP49-202ENST00000373010 KRTAP19-3Q7Z4W3 81 aa6.21□□□□□ -1.41
USP49-202ENST00000373010 KRTAP2-3P0C7H8 128 aa6.2□□□□□ -1.42
USP49-202ENST00000373010 KRTAP2-4Q9BYR9 128 aa6.2□□□□□ -1.42
USP49-202ENST00000373010 KRTAP2-1Q9BYU5 128 aa6.2□□□□□ -1.42
USP49-202ENST00000373010 MT1MQ8N339 61 aa6.19□□□□□ -1.42
USP49-202ENST00000373010 MT1GP13640 62 aa6.17□□□□□ -1.42
USP49-202ENST00000373010 LOC100996750A0A140TA64 210 aa6.16□□□□□ -1.42
USP49-202ENST00000373010 SPRR2FQ96RM1 72 aa6.13□□□□□ -1.43
USP49-202ENST00000373010 MACF1Q9UPN3 7388 aaKnown RBP6.06□□□□□ -1.44
USP49-202ENST00000373010 LCE5AQ5TCM9 118 aa6.04□□□□□ -1.44
USP49-202ENST00000373010 KRTAP9-2Q9BYQ4 174 aa6□□□□□ -1.45
USP49-202ENST00000373010 CRCT1Q9UGL9 99 aa5.99□□□□□ -1.45
USP49-202ENST00000373010 DSTQ03001 7570 aaKnown RBP5.89□□□□□ -1.47
USP49-202ENST00000373010 SYNE2Q8WXH0 6885 aaKnown RBP5.87□□□□□ -1.47
USP49-202ENST00000373010 MDN1Q9NU22 5596 aa5.76□□□□□ -1.49
USP49-202ENST00000373010 KRTAP5-9P26371 169 aa5.76□□□□□ -1.49
USP49-202ENST00000373010 LCE1AQ5T7P2 110 aa5.75□□□□□ -1.49
USP49-202ENST00000373010 SPRR2EP22531 72 aa5.64□□□□□ -1.51
USP49-202ENST00000373010 SPRR2BP35325 72 aa5.64□□□□□ -1.51
USP49-202ENST00000373010 SPRR2AP35326 72 aa5.64□□□□□ -1.51
USP49-202ENST00000373010 LCE3BQ5TA77 95 aa5.6□□□□□ -1.51
USP49-202ENST00000373010 KRTAP6-1Q3LI64 71 aa5.58□□□□□ -1.52
USP49-202ENST00000373010 MT1AP04731 61 aa5.52□□□□□ -1.53
USP49-202ENST00000373010 KRTAP5-5Q701N2 237 aaPredicted RBP5.49□□□□□ -1.53
USP49-202ENST00000373010 KRTAP4-9Q9BYQ8 210 aa5.46□□□□□ -1.54
USP49-202ENST00000373010 KRTAP12-4P60329 112 aa5.43□□□□□ -1.54
USP49-202ENST00000373010 SYNE1Q8NF91 8797 aaKnown RBP5.41□□□□□ -1.54
USP49-202ENST00000373010 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.4□□□□□ -1.54
USP49-202ENST00000373010 SPRR2DP22532 72 aa5.4□□□□□ -1.54
USP49-202ENST00000373010 KRTAP6-3Q3LI67 103 aa5.38□□□□□ -1.55
USP49-202ENST00000373010 KRTAP9-6A0A140TA67 174 aa5.25□□□□□ -1.57
USP49-202ENST00000373010 KRTAP9-4Q9BYQ2 154 aa5.22□□□□□ -1.57
USP49-202ENST00000373010 LCE3DQ9BYE3 92 aa5.19□□□□□ -1.58
USP49-202ENST00000373010 LCE3EQ5T5B0 92 aa5.1□□□□□ -1.59
USP49-202ENST00000373010 KRTAP6-2Q3LI66 62 aa5.04□□□□□ -1.6
USP49-202ENST00000373010 NEBP20929 6669 aa4.99□□□□□ -1.61
USP49-202ENST00000373010 MT3P25713 68 aa4.96□□□□□ -1.62
USP49-202ENST00000373010 KRTAP5-4Q6L8H1 288 aa4.94□□□□□ -1.62
USP49-202ENST00000373010 KRTAP9-7A8MTY7 169 aa4.91□□□□□ -1.62
USP49-202ENST00000373010 OBSCNQ5VST9 7968 aa4.81□□□□□ -1.64
USP49-202ENST00000373010 KRTAP4-6Q9BYQ5 205 aa4.79□□□□□ -1.64
USP49-202ENST00000373010 PRM1P04553 51 aa4.78□□□□□ -1.64
USP49-202ENST00000373010 MT4P47944 62 aa4.76□□□□□ -1.65
USP49-202ENST00000373010 LCE4AQ5TA78 99 aa4.67□□□□□ -1.66
USP49-202ENST00000373010 KRTAP20-2Q3LI61 65 aa4.65□□□□□ -1.66
USP49-202ENST00000373010 KRTAP5-2Q701N4 177 aa4.58□□□□□ -1.68
USP49-202ENST00000373010 HMCN1Q96RW7 5635 aa4.55□□□□□ -1.68
USP49-202ENST00000373010 KRTAP2-2Q9BYT5 123 aa4.54□□□□□ -1.68
USP49-202ENST00000373010 LCE1DQ5T752 114 aa4.53□□□□□ -1.68
USP49-202ENST00000373010 KRTAP20-1Q3LI63 56 aa4.44□□□□□ -1.7
USP49-202ENST00000373010 KRTAP5-3Q6L8H2 238 aa4.44□□□□□ -1.7
USP49-202ENST00000373010 MUC5ACP98088 5654 aa4.15□□□□□ -1.74
USP49-202ENST00000373010 LCE1EQ5T753 118 aa4.1□□□□□ -1.75
USP49-202ENST00000373010 LCE1BQ5T7P3 118 aa4.06□□□□□ -1.76
USP49-202ENST00000373010 KRTAP5-1Q6L8H4 278 aa3.92□□□□□ -1.78
USP49-202ENST00000373010 KRTAP4-2Q9BYR5 136 aa3.92□□□□□ -1.78
USP49-202ENST00000373010 KRTAP5-10Q6L8G5 202 aa3.91□□□□□ -1.78
USP49-202ENST00000373010 KRTAP4-11Q9BYQ6 195 aa3.89□□□□□ -1.79
USP49-202ENST00000373010 LCE1CQ5T751 118 aa3.87□□□□□ -1.79
USP49-202ENST00000373010 KRTAP5-8O75690 187 aa3.74□□□□□ -1.81
USP49-202ENST00000373010 AHNAK2Q8IVF2 5795 aa3.71□□□□□ -1.82
USP49-202ENST00000373010 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.64□□□□□ -1.83
USP49-202ENST00000373010 KRTAP5-7Q6L8G8 165 aa3.63□□□□□ -1.83
USP49-202ENST00000373010 KRTAP21-2Q3LI59 83 aa3.61□□□□□ -1.83
USP49-202ENST00000373010 KRTAP4-12Q9BQ66 201 aa3.36□□□□□ -1.87
USP49-202ENST00000373010 KRTAP5-11Q6L8G4 156 aa3.35□□□□□ -1.87
USP49-202ENST00000373010 KRTAP4-4Q9BYR3 166 aa3.32□□□□□ -1.88
USP49-202ENST00000373010 MUC5BQ9HC84 5762 aaPredicted RBP3.3□□□□□ -1.88
USP49-202ENST00000373010 KRTAP9-9Q9BYP9 154 aa3.2□□□□□ -1.9
USP49-202ENST00000373010 GPR98Q8WXG9 6306 aa3.17□□□□□ -1.9
USP49-202ENST00000373010 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
USP49-202ENST00000373010 KRTAP21-1Q3LI58 79 aa2.96□□□□□ -1.94
USP49-202ENST00000373010 LCE1FQ5T754 118 aa2.94□□□□□ -1.94
USP49-202ENST00000373010 PHGR1C9JFL3 82 aa2.9□□□□□ -1.94
USP49-202ENST00000373010 AHNAKQ09666 5890 aaKnown RBP2.61□□□□□ -1.99
USP49-202ENST00000373010 MUC16Q8WXI7 14507 aa1.93□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 128.8 ms