RNA–Protein interactions for RNA: ENST00000369603.9

SMNDC1-202, Transcript of survival motor neuron domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMNDC1, Length 4,341 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-202ENST00000369603 MT1GP13640 62 aa1.85□□□□□ -2.11
SMNDC1-202ENST00000369603 AHNAKQ09666 5890 aaKnown RBP1.84□□□□□ -2.11
SMNDC1-202ENST00000369603 MT1EP04732 61 aa1.82□□□□□ -2.12
SMNDC1-202ENST00000369603 MT1LQ93083 61 aa1.82□□□□□ -2.12
SMNDC1-202ENST00000369603 KRTAP4-2Q9BYR5 136 aa1.81□□□□□ -2.12
SMNDC1-202ENST00000369603 KRTAP19-3Q7Z4W3 81 aa1.8□□□□□ -2.12
SMNDC1-202ENST00000369603 KRTAP4-7Q9BYR0 210 aa1.8□□□□□ -2.12
SMNDC1-202ENST00000369603 SPRR2EP22531 72 aa1.79□□□□□ -2.12
SMNDC1-202ENST00000369603 SPRR2BP35325 72 aa1.79□□□□□ -2.12
SMNDC1-202ENST00000369603 SPRR2AP35326 72 aa1.79□□□□□ -2.12
SMNDC1-202ENST00000369603 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.78□□□□□ -2.12
SMNDC1-202ENST00000369603 LCE1DQ5T752 114 aa1.77□□□□□ -2.13
SMNDC1-202ENST00000369603 KRTAP19-7Q3SYF9 63 aa1.77□□□□□ -2.13
SMNDC1-202ENST00000369603 KRTAP20-1Q3LI63 56 aa1.75□□□□□ -2.13
SMNDC1-202ENST00000369603 MUC5BQ9HC84 5762 aaPredicted RBP1.74□□□□□ -2.13
SMNDC1-202ENST00000369603 MT1MQ8N339 61 aa1.74□□□□□ -2.13
SMNDC1-202ENST00000369603 MT3P25713 68 aa1.73□□□□□ -2.13
SMNDC1-202ENST00000369603 NEBP20929 6669 aa1.73□□□□□ -2.13
SMNDC1-202ENST00000369603 SPRR2DP22532 72 aa1.73□□□□□ -2.13
SMNDC1-202ENST00000369603 KRTAP4-12Q9BQ66 201 aa1.73□□□□□ -2.13
SMNDC1-202ENST00000369603 KRTAP12-4P60329 112 aa1.71□□□□□ -2.14
SMNDC1-202ENST00000369603 KRTAP9-9Q9BYP9 154 aa1.71□□□□□ -2.14
SMNDC1-202ENST00000369603 KRTAP9-4Q9BYQ2 154 aa1.71□□□□□ -2.14
SMNDC1-202ENST00000369603 FSIP2Q5CZC0 6907 aa1.7□□□□□ -2.14
SMNDC1-202ENST00000369603 LCE4AQ5TA78 99 aa1.67□□□□□ -2.14
SMNDC1-202ENST00000369603 KRTAP4-9Q9BYQ8 210 aa1.67□□□□□ -2.14
SMNDC1-202ENST00000369603 USH2AO75445 5202 aa1.67□□□□□ -2.14
SMNDC1-202ENST00000369603 KRTAP9-6A8MVA2 160 aa1.66□□□□□ -2.14
SMNDC1-202ENST00000369603 KRTAP2-3P0C7H8 128 aa1.65□□□□□ -2.15
SMNDC1-202ENST00000369603 KRTAP2-4Q9BYR9 128 aa1.65□□□□□ -2.15
SMNDC1-202ENST00000369603 KRTAP2-1Q9BYU5 128 aa1.65□□□□□ -2.15
SMNDC1-202ENST00000369603 KRTAP4-3Q9BYR4 195 aa1.64□□□□□ -2.15
SMNDC1-202ENST00000369603 SYNE1Q8NF91 8797 aaKnown RBP1.64□□□□□ -2.15
SMNDC1-202ENST00000369603 LCE5AQ5TCM9 118 aa1.64□□□□□ -2.15
SMNDC1-202ENST00000369603 LCE1AQ5T7P2 110 aa1.63□□□□□ -2.15
SMNDC1-202ENST00000369603 LCE3DQ9BYE3 92 aa1.62□□□□□ -2.15
SMNDC1-202ENST00000369603 KRTAP5-9P26371 169 aa1.6□□□□□ -2.15
SMNDC1-202ENST00000369603 MT1AP04731 61 aa1.6□□□□□ -2.15
SMNDC1-202ENST00000369603 KRTAP6-3Q3LI67 103 aa1.6□□□□□ -2.15
SMNDC1-202ENST00000369603 LCE3EQ5T5B0 92 aa1.59□□□□□ -2.15
SMNDC1-202ENST00000369603 KMT2DO14686 5537 aa1.59□□□□□ -2.15
SMNDC1-202ENST00000369603 KRTAP4-11Q9BYQ6 195 aa1.57□□□□□ -2.16
SMNDC1-202ENST00000369603 KRTAP5-2Q701N4 177 aa1.56□□□□□ -2.16
SMNDC1-202ENST00000369603 AHNAK2Q8IVF2 5795 aa1.56□□□□□ -2.16
SMNDC1-202ENST00000369603 SSPOA2VEC9 5147 aa1.55□□□□□ -2.16
SMNDC1-202ENST00000369603 FCGBPQ9Y6R7 5405 aaPredicted RBP1.54□□□□□ -2.16
SMNDC1-202ENST00000369603 SYNE2Q8WXH0 6885 aaKnown RBP1.53□□□□□ -2.16
SMNDC1-202ENST00000369603 MACF1Q9UPN3 7388 aaKnown RBP1.52□□□□□ -2.17
SMNDC1-202ENST00000369603 PRM1P04553 51 aa1.52□□□□□ -2.17
SMNDC1-202ENST00000369603 DSTQ03001 7570 aaKnown RBP1.51□□□□□ -2.17
SMNDC1-202ENST00000369603 KRTAP6-1Q3LI64 71 aa1.51□□□□□ -2.17
SMNDC1-202ENST00000369603 OBSCNQ5VST9 7968 aa1.5□□□□□ -2.17
SMNDC1-202ENST00000369603 MT4P47944 62 aa1.49□□□□□ -2.17
SMNDC1-202ENST00000369603 KRTAP5-7Q6L8G8 165 aa1.49□□□□□ -2.17
SMNDC1-202ENST00000369603 MUC12Q9UKN1 5478 aa1.45□□□□□ -2.18
SMNDC1-202ENST00000369603 KRTAP6-2Q3LI66 62 aa1.43□□□□□ -2.18
SMNDC1-202ENST00000369603 KRTAP2-2Q9BYT5 123 aa1.43□□□□□ -2.18
SMNDC1-202ENST00000369603 HMCN1Q96RW7 5635 aa1.42□□□□□ -2.18
SMNDC1-202ENST00000369603 KRTAP5-4Q6L8H1 288 aa1.42□□□□□ -2.18
SMNDC1-202ENST00000369603 KRTAP4-4Q9BYR3 166 aa1.35□□□□□ -2.19
SMNDC1-202ENST00000369603 MDN1Q9NU22 5596 aa1.35□□□□□ -2.19
SMNDC1-202ENST00000369603 LCE1BQ5T7P3 118 aa1.34□□□□□ -2.19
SMNDC1-202ENST00000369603 KRTAP5-5Q701N2 237 aaPredicted RBP1.33□□□□□ -2.2
SMNDC1-202ENST00000369603 MUC19Q7Z5P9 8384 aa1.32□□□□□ -2.2
SMNDC1-202ENST00000369603 LCE1EQ5T753 118 aa1.3□□□□□ -2.2
SMNDC1-202ENST00000369603 KRTAP20-2Q3LI61 65 aa1.29□□□□□ -2.2
SMNDC1-202ENST00000369603 MUC5ACP98088 5654 aa1.29□□□□□ -2.2
SMNDC1-202ENST00000369603 LCE1FQ5T754 118 aa1.26□□□□□ -2.21
SMNDC1-202ENST00000369603 KRTAP5-10Q6L8G5 202 aa1.25□□□□□ -2.21
SMNDC1-202ENST00000369603 KRTAP5-8O75690 187 aa1.24□□□□□ -2.21
SMNDC1-202ENST00000369603 KRTAP5-11Q6L8G4 156 aa1.08□□□□□ -2.24
SMNDC1-202ENST00000369603 LCE1CQ5T751 118 aa1.06□□□□□ -2.24
SMNDC1-202ENST00000369603 KRTAP5-1Q6L8H4 278 aa0.97□□□□□ -2.25
SMNDC1-202ENST00000369603 KRTAP21-2Q3LI59 83 aa0.89□□□□□ -2.27
SMNDC1-202ENST00000369603 PHGR1C9JFL3 82 aa0.87□□□□□ -2.27
SMNDC1-202ENST00000369603 KRTAP21-1Q3LI58 79 aa0.82□□□□□ -2.28
SMNDC1-202ENST00000369603 MUC16Q8WXI7 14507 aa0.48□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 199 ms