RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 LRP1BQ9NZR2 4599 aa1.51□□□□□ -2.17
USH2A-202ENST00000366942 ABCA13Q86UQ4 5058 aa1.51□□□□□ -2.17
USH2A-202ENST00000366942 LCE1AQ5T7P2 110 aa1.5□□□□□ -2.17
USH2A-202ENST00000366942 MT4P47944 62 aa1.5□□□□□ -2.17
USH2A-202ENST00000366942 FAT1Q14517 4588 aa1.5□□□□□ -2.17
USH2A-202ENST00000366942 HERC2O95714 4834 aa1.5□□□□□ -2.17
USH2A-202ENST00000366942 LCE4AQ5TA78 99 aa1.49□□□□□ -2.17
USH2A-202ENST00000366942 MT3P25713 68 aa1.49□□□□□ -2.17
USH2A-202ENST00000366942 KRTAP19-6Q3LI70 58 aa1.48□□□□□ -2.17
USH2A-202ENST00000366942 KRTAP19-5Q3LI72 72 aa1.47□□□□□ -2.17
USH2A-202ENST00000366942 SYNE1Q8NF91 8797 aaKnown RBP1.47□□□□□ -2.17
USH2A-202ENST00000366942 KRTAP4-1Q9BYQ7 146 aa1.46□□□□□ -2.18
USH2A-202ENST00000366942 KRTAP19-3Q7Z4W3 81 aa1.45□□□□□ -2.18
USH2A-202ENST00000366942 SYNE2Q8WXH0 6885 aaKnown RBP1.45□□□□□ -2.18
USH2A-202ENST00000366942 LRP1Q07954 4544 aaKnown RBP1.44□□□□□ -2.18
USH2A-202ENST00000366942 KRTAP4-11Q9BYQ6 195 aa1.44□□□□□ -2.18
USH2A-202ENST00000366942 FSIP2Q5CZC0 6907 aa1.44□□□□□ -2.18
USH2A-202ENST00000366942 OBSCNQ5VST9 7968 aa1.43□□□□□ -2.18
USH2A-202ENST00000366942 LCE3CQ5T5A8 94 aa1.43□□□□□ -2.18
USH2A-202ENST00000366942 KRTAP5-9P26371 169 aa1.43□□□□□ -2.18
USH2A-202ENST00000366942 FLGP20930 4061 aaPredicted RBP1.43□□□□□ -2.18
USH2A-202ENST00000366942 LCE5AQ5TCM9 118 aa1.42□□□□□ -2.18
USH2A-202ENST00000366942 MT1BP07438 61 aa1.41□□□□□ -2.18
USH2A-202ENST00000366942 LCE1BQ5T7P3 118 aa1.4□□□□□ -2.19
USH2A-202ENST00000366942 NEBP20929 6669 aa1.4□□□□□ -2.19
USH2A-202ENST00000366942 LCE1DQ5T752 114 aa1.39□□□□□ -2.19
USH2A-202ENST00000366942 HMCN2Q8NDA2 5059 aa1.39□□□□□ -2.19
USH2A-202ENST00000366942 MUC17Q685J3 4493 aa1.39□□□□□ -2.19
USH2A-202ENST00000366942 KRTAP9-3Q9BYQ3 159 aa1.38□□□□□ -2.19
USH2A-202ENST00000366942 KRTAP5-4Q6L8H1 288 aa1.37□□□□□ -2.19
USH2A-202ENST00000366942 LCE3DQ9BYE3 92 aa1.37□□□□□ -2.19
USH2A-202ENST00000366942 KIAA1109Q2LD37 5005 aa1.37□□□□□ -2.19
USH2A-202ENST00000366942 LPAP08519 4548 aa1.36□□□□□ -2.19
USH2A-202ENST00000366942 LCE3EQ5T5B0 92 aa1.36□□□□□ -2.19
USH2A-202ENST00000366942 LCE1CQ5T751 118 aa1.35□□□□□ -2.19
USH2A-202ENST00000366942 LCE1EQ5T753 118 aa1.35□□□□□ -2.19
USH2A-202ENST00000366942 LCE1FQ5T754 118 aa1.35□□□□□ -2.19
USH2A-202ENST00000366942 MUC5BQ9HC84 5762 aaPredicted RBP1.35□□□□□ -2.19
USH2A-202ENST00000366942 MT1LQ93083 61 aa1.35□□□□□ -2.19
USH2A-202ENST00000366942 FAT4Q6V0I7 4981 aa1.33□□□□□ -2.2
USH2A-202ENST00000366942 MT1MQ8N339 61 aa1.31□□□□□ -2.2
USH2A-202ENST00000366942 MT1XP80297 61 aa1.3□□□□□ -2.2
USH2A-202ENST00000366942 AHNAK2Q8IVF2 5795 aa1.29□□□□□ -2.2
USH2A-202ENST00000366942 UBR4Q5T4S7 5183 aa1.28□□□□□ -2.2
USH2A-202ENST00000366942 MT1EP04732 61 aa1.27□□□□□ -2.21
USH2A-202ENST00000366942 MT1AP04731 61 aa1.26□□□□□ -2.21
USH2A-202ENST00000366942 KRTAP19-2Q3LHN2 52 aa1.26□□□□□ -2.21
USH2A-202ENST00000366942 KRTAP4-4Q9BYR3 166 aa1.25□□□□□ -2.21
USH2A-202ENST00000366942 MUC2Q02817 5179 aa1.25□□□□□ -2.21
USH2A-202ENST00000366942 DSTQ03001 7570 aaKnown RBP1.24□□□□□ -2.21
USH2A-202ENST00000366942 FCGBPQ9Y6R7 5405 aaPredicted RBP1.2□□□□□ -2.22
USH2A-202ENST00000366942 MUC12Q9UKN1 5478 aa1.2□□□□□ -2.22
USH2A-202ENST00000366942 KRTAP5-11Q6L8G4 156 aa1.19□□□□□ -2.22
USH2A-202ENST00000366942 RNF213Q63HN8 5207 aa1.18□□□□□ -2.22
USH2A-202ENST00000366942 MDN1Q9NU22 5596 aa1.16□□□□□ -2.22
USH2A-202ENST00000366942 AHNAKQ09666 5890 aaKnown RBP1.16□□□□□ -2.22
USH2A-202ENST00000366942 KMT2DO14686 5537 aa1.13□□□□□ -2.23
USH2A-202ENST00000366942 MUC19Q7Z5P9 8384 aa1.12□□□□□ -2.23
USH2A-202ENST00000366942 KRTAP5-8O75690 187 aa1.1□□□□□ -2.23
USH2A-202ENST00000366942 SSPOA2VEC9 5147 aa1.1□□□□□ -2.23
USH2A-202ENST00000366942 KRTAP6-2Q3LI66 62 aa1.08□□□□□ -2.24
USH2A-202ENST00000366942 KRTAP5-1Q6L8H4 278 aa1.08□□□□□ -2.24
USH2A-202ENST00000366942 USH2AO75445 5202 aa1.07□□□□□ -2.24
USH2A-202ENST00000366942 KRTAP19-7Q3SYF9 63 aa1.03□□□□□ -2.24
USH2A-202ENST00000366942 KRTAP20-2Q3LI61 65 aa1.02□□□□□ -2.25
USH2A-202ENST00000366942 PRM1P04553 51 aa1□□□□□ -2.25
USH2A-202ENST00000366942 KRTAP4-3Q9BYR4 195 aa0.99□□□□□ -2.25
USH2A-202ENST00000366942 KRTAP6-1Q3LI64 71 aa0.97□□□□□ -2.25
USH2A-202ENST00000366942 MUC5ACP98088 5654 aa0.97□□□□□ -2.25
USH2A-202ENST00000366942 PHGR1C9JFL3 82 aa0.95□□□□□ -2.26
USH2A-202ENST00000366942 KRTAP9-6A8MVA2 160 aa0.93□□□□□ -2.26
USH2A-202ENST00000366942 KRTAP5-5Q701N2 237 aaPredicted RBP0.9□□□□□ -2.26
USH2A-202ENST00000366942 KRTAP5-7Q6L8G8 165 aa0.83□□□□□ -2.28
USH2A-202ENST00000366942 KRTAP21-1Q3LI58 79 aa0.79□□□□□ -2.28
USH2A-202ENST00000366942 KRTAP5-10Q6L8G5 202 aa0.7□□□□□ -2.3
USH2A-202ENST00000366942 KRTAP21-2Q3LI59 83 aa0.67□□□□□ -2.3
USH2A-202ENST00000366942 MUC16Q8WXI7 14507 aa0.48□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 61.7 ms