RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 KRTAP2-3P0C7H8 128 aa7.65□□□□□ -1.18
LDB1-201ENST00000361198 KRTAP2-4Q9BYR9 128 aa7.65□□□□□ -1.18
LDB1-201ENST00000361198 KRTAP2-1Q9BYU5 128 aa7.65□□□□□ -1.18
LDB1-201ENST00000361198 MACF1Q9UPN3 7388 aaKnown RBP7.56□□□□□ -1.2
LDB1-201ENST00000361198 KRTAP19-3Q7Z4W3 81 aa7.56□□□□□ -1.2
LDB1-201ENST00000361198 KRTAP9-2Q9BYQ4 174 aa7.53□□□□□ -1.2
LDB1-201ENST00000361198 KRTAP4-3Q9BYR4 195 aa7.52□□□□□ -1.21
LDB1-201ENST00000361198 MT1GP13640 62 aa7.51□□□□□ -1.21
LDB1-201ENST00000361198 MT1MQ8N339 61 aa7.5□□□□□ -1.21
LDB1-201ENST00000361198 SPRR2FQ96RM1 72 aa7.48□□□□□ -1.21
LDB1-201ENST00000361198 LOC100996750A0A140TA64 210 aa7.39□□□□□ -1.23
LDB1-201ENST00000361198 LCE5AQ5TCM9 118 aa7.37□□□□□ -1.23
LDB1-201ENST00000361198 SYNE2Q8WXH0 6885 aaKnown RBP7.34□□□□□ -1.24
LDB1-201ENST00000361198 CRCT1Q9UGL9 99 aa7.33□□□□□ -1.24
LDB1-201ENST00000361198 DSTQ03001 7570 aaKnown RBP7.29□□□□□ -1.24
LDB1-201ENST00000361198 MDN1Q9NU22 5596 aa7.19□□□□□ -1.26
LDB1-201ENST00000361198 KRTAP5-9P26371 169 aa7.13□□□□□ -1.27
LDB1-201ENST00000361198 LCE1AQ5T7P2 110 aa7.06□□□□□ -1.28
LDB1-201ENST00000361198 SPRR2EP22531 72 aa6.92□□□□□ -1.3
LDB1-201ENST00000361198 SPRR2BP35325 72 aa6.92□□□□□ -1.3
LDB1-201ENST00000361198 SPRR2AP35326 72 aa6.92□□□□□ -1.3
LDB1-201ENST00000361198 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.76□□□□□ -1.33
LDB1-201ENST00000361198 KRTAP6-1Q3LI64 71 aa6.72□□□□□ -1.33
LDB1-201ENST00000361198 KRTAP6-3Q3LI67 103 aa6.71□□□□□ -1.33
LDB1-201ENST00000361198 KRTAP12-4P60329 112 aa6.7□□□□□ -1.34
LDB1-201ENST00000361198 KRTAP5-5Q701N2 237 aaPredicted RBP6.69□□□□□ -1.34
LDB1-201ENST00000361198 LCE3BQ5TA77 95 aa6.69□□□□□ -1.34
LDB1-201ENST00000361198 MT1AP04731 61 aa6.67□□□□□ -1.34
LDB1-201ENST00000361198 KRTAP9-6A0A140TA67 174 aa6.65□□□□□ -1.35
LDB1-201ENST00000361198 SPRR2DP22532 72 aa6.63□□□□□ -1.35
LDB1-201ENST00000361198 SYNE1Q8NF91 8797 aaKnown RBP6.6□□□□□ -1.35
LDB1-201ENST00000361198 KRTAP4-9Q9BYQ8 210 aa6.48□□□□□ -1.37
LDB1-201ENST00000361198 KRTAP9-4Q9BYQ2 154 aa6.32□□□□□ -1.4
LDB1-201ENST00000361198 LCE3DQ9BYE3 92 aa6.29□□□□□ -1.4
LDB1-201ENST00000361198 NEBP20929 6669 aa6.27□□□□□ -1.41
LDB1-201ENST00000361198 LCE3EQ5T5B0 92 aa6.22□□□□□ -1.41
LDB1-201ENST00000361198 KRTAP9-7A8MTY7 169 aa6.19□□□□□ -1.42
LDB1-201ENST00000361198 KRTAP6-2Q3LI66 62 aa6.09□□□□□ -1.43
LDB1-201ENST00000361198 KRTAP5-4Q6L8H1 288 aa6.09□□□□□ -1.44
LDB1-201ENST00000361198 MT3P25713 68 aa6.02□□□□□ -1.45
LDB1-201ENST00000361198 OBSCNQ5VST9 7968 aa5.93□□□□□ -1.46
LDB1-201ENST00000361198 PRM1P04553 51 aa5.9□□□□□ -1.46
LDB1-201ENST00000361198 KRTAP4-6Q9BYQ5 205 aa5.87□□□□□ -1.47
LDB1-201ENST00000361198 MT4P47944 62 aa5.83□□□□□ -1.48
LDB1-201ENST00000361198 LCE4AQ5TA78 99 aa5.79□□□□□ -1.48
LDB1-201ENST00000361198 KRTAP20-2Q3LI61 65 aa5.71□□□□□ -1.5
LDB1-201ENST00000361198 KRTAP2-2Q9BYT5 123 aa5.68□□□□□ -1.5
LDB1-201ENST00000361198 HMCN1Q96RW7 5635 aa5.65□□□□□ -1.5
LDB1-201ENST00000361198 KRTAP5-2Q701N4 177 aa5.62□□□□□ -1.51
LDB1-201ENST00000361198 LCE1DQ5T752 114 aa5.59□□□□□ -1.51
LDB1-201ENST00000361198 KRTAP20-1Q3LI63 56 aa5.5□□□□□ -1.53
LDB1-201ENST00000361198 KRTAP5-3Q6L8H2 238 aa5.47□□□□□ -1.53
LDB1-201ENST00000361198 LCE1EQ5T753 118 aa5.04□□□□□ -1.6
LDB1-201ENST00000361198 MUC5ACP98088 5654 aa5.03□□□□□ -1.6
LDB1-201ENST00000361198 LCE1BQ5T7P3 118 aa4.89□□□□□ -1.63
LDB1-201ENST00000361198 KRTAP5-1Q6L8H4 278 aa4.83□□□□□ -1.64
LDB1-201ENST00000361198 KRTAP4-11Q9BYQ6 195 aa4.81□□□□□ -1.64
LDB1-201ENST00000361198 KRTAP5-10Q6L8G5 202 aa4.8□□□□□ -1.64
LDB1-201ENST00000361198 KRTAP4-2Q9BYR5 136 aa4.77□□□□□ -1.65
LDB1-201ENST00000361198 LCE1CQ5T751 118 aa4.75□□□□□ -1.65
LDB1-201ENST00000361198 AHNAK2Q8IVF2 5795 aa4.65□□□□□ -1.67
LDB1-201ENST00000361198 KRTAP5-8O75690 187 aa4.63□□□□□ -1.67
LDB1-201ENST00000361198 KRTAP5-7Q6L8G8 165 aa4.51□□□□□ -1.69
LDB1-201ENST00000361198 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.46□□□□□ -1.7
LDB1-201ENST00000361198 KRTAP21-2Q3LI59 83 aa4.37□□□□□ -1.71
LDB1-201ENST00000361198 GPR98Q8WXG9 6306 aa4.15□□□□□ -1.74
LDB1-201ENST00000361198 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
LDB1-201ENST00000361198 MUC5BQ9HC84 5762 aaPredicted RBP4.12□□□□□ -1.75
LDB1-201ENST00000361198 KRTAP9-9Q9BYP9 154 aa3.99□□□□□ -1.77
LDB1-201ENST00000361198 LCE1FQ5T754 118 aa3.96□□□□□ -1.78
LDB1-201ENST00000361198 KRTAP4-4Q9BYR3 166 aa3.96□□□□□ -1.78
LDB1-201ENST00000361198 KRTAP4-12Q9BQ66 201 aa3.92□□□□□ -1.78
LDB1-201ENST00000361198 KRTAP21-1Q3LI58 79 aa3.77□□□□□ -1.81
LDB1-201ENST00000361198 MUC19Q7Z5P9 8384 aa3.59□□□□□ -1.83
LDB1-201ENST00000361198 PHGR1C9JFL3 82 aa3.56□□□□□ -1.84
LDB1-201ENST00000361198 AHNAKQ09666 5890 aaKnown RBP3.36□□□□□ -1.87
LDB1-201ENST00000361198 MUC16Q8WXI7 14507 aa2.3□□□□□ -2.04
Retrieved 77 of 20,778 RNA–protein pairs in 13.9 ms