RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 KRTAP9-6A8MVA2 160 aa3.4□□□□□ -1.86
RNF40-202ENST00000357890 KRTAP19-7Q3SYF9 63 aa3.39□□□□□ -1.87
RNF40-202ENST00000357890 FCGBPQ9Y6R7 5405 aaPredicted RBP3.39□□□□□ -1.87
RNF40-202ENST00000357890 MT1LQ93083 61 aa3.35□□□□□ -1.87
RNF40-202ENST00000357890 MT1EP04732 61 aa3.34□□□□□ -1.87
RNF40-202ENST00000357890 MT1GP13640 62 aa3.29□□□□□ -1.88
RNF40-202ENST00000357890 KRTAP2-3P0C7H8 128 aa3.28□□□□□ -1.88
RNF40-202ENST00000357890 KRTAP2-4Q9BYR9 128 aa3.28□□□□□ -1.88
RNF40-202ENST00000357890 KRTAP2-1Q9BYU5 128 aa3.28□□□□□ -1.88
RNF40-202ENST00000357890 LOC100996750A0A140TA64 210 aa3.26□□□□□ -1.89
RNF40-202ENST00000357890 LCE3BQ5TA77 95 aa3.25□□□□□ -1.89
RNF40-202ENST00000357890 SPRR2FQ96RM1 72 aa3.25□□□□□ -1.89
RNF40-202ENST00000357890 KRTAP4-3Q9BYR4 195 aa3.24□□□□□ -1.89
RNF40-202ENST00000357890 KRTAP9-7A8MTY7 169 aa3.23□□□□□ -1.89
RNF40-202ENST00000357890 SSPOA2VEC9 5147 aa3.22□□□□□ -1.89
RNF40-202ENST00000357890 SYNE2Q8WXH0 6885 aaKnown RBP3.2□□□□□ -1.9
RNF40-202ENST00000357890 MUC12Q9UKN1 5478 aa3.2□□□□□ -1.9
RNF40-202ENST00000357890 KRTAP19-3Q7Z4W3 81 aa3.17□□□□□ -1.9
RNF40-202ENST00000357890 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.16□□□□□ -1.9
RNF40-202ENST00000357890 MT1MQ8N339 61 aa3.14□□□□□ -1.91
RNF40-202ENST00000357890 KRTAP4-9Q9BYQ8 210 aa3.13□□□□□ -1.91
RNF40-202ENST00000357890 KRTAP6-3Q3LI67 103 aa3.08□□□□□ -1.92
RNF40-202ENST00000357890 SPRR2EP22531 72 aa3.07□□□□□ -1.92
RNF40-202ENST00000357890 SPRR2BP35325 72 aa3.07□□□□□ -1.92
RNF40-202ENST00000357890 SPRR2AP35326 72 aa3.07□□□□□ -1.92
RNF40-202ENST00000357890 PRM1P04553 51 aa3.06□□□□□ -1.92
RNF40-202ENST00000357890 LCE3DQ9BYE3 92 aa3.04□□□□□ -1.92
RNF40-202ENST00000357890 KRTAP5-9P26371 169 aa3.01□□□□□ -1.93
RNF40-202ENST00000357890 LCE3EQ5T5B0 92 aa3□□□□□ -1.93
RNF40-202ENST00000357890 MACF1Q9UPN3 7388 aaKnown RBP3□□□□□ -1.93
RNF40-202ENST00000357890 LCE5AQ5TCM9 118 aa2.98□□□□□ -1.93
RNF40-202ENST00000357890 SPRR2DP22532 72 aa2.96□□□□□ -1.94
RNF40-202ENST00000357890 LCE1AQ5T7P2 110 aa2.96□□□□□ -1.94
RNF40-202ENST00000357890 KRTAP20-1Q3LI63 56 aa2.91□□□□□ -1.94
RNF40-202ENST00000357890 KRTAP6-1Q3LI64 71 aa2.86□□□□□ -1.95
RNF40-202ENST00000357890 MT1AP04731 61 aa2.85□□□□□ -1.95
RNF40-202ENST00000357890 MDN1Q9NU22 5596 aa2.81□□□□□ -1.96
RNF40-202ENST00000357890 KRTAP6-2Q3LI66 62 aa2.76□□□□□ -1.97
RNF40-202ENST00000357890 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
RNF40-202ENST00000357890 NEBP20929 6669 aa2.72□□□□□ -1.97
RNF40-202ENST00000357890 LCE4AQ5TA78 99 aa2.72□□□□□ -1.97
RNF40-202ENST00000357890 KRTAP2-2Q9BYT5 123 aa2.71□□□□□ -1.98
RNF40-202ENST00000357890 KRTAP9-4Q9BYQ2 154 aa2.66□□□□□ -1.98
RNF40-202ENST00000357890 MT4P47944 62 aa2.65□□□□□ -1.99
RNF40-202ENST00000357890 KRTAP5-5Q701N2 237 aaPredicted RBP2.65□□□□□ -1.99
RNF40-202ENST00000357890 MT3P25713 68 aa2.64□□□□□ -1.99
RNF40-202ENST00000357890 LCE1EQ5T753 118 aa2.55□□□□□ -2
RNF40-202ENST00000357890 LCE1FQ5T754 118 aa2.53□□□□□ -2
RNF40-202ENST00000357890 KRTAP5-4Q6L8H1 288 aa2.49□□□□□ -2.01
RNF40-202ENST00000357890 LCE1BQ5T7P3 118 aa2.47□□□□□ -2.01
RNF40-202ENST00000357890 KRTAP9-9Q9BYP9 154 aa2.47□□□□□ -2.01
RNF40-202ENST00000357890 LCE1DQ5T752 114 aa2.46□□□□□ -2.02
RNF40-202ENST00000357890 GPR98Q8WXG9 6306 aa2.45□□□□□ -2.02
RNF40-202ENST00000357890 KRTAP4-6Q9BYQ5 205 aa2.41□□□□□ -2.02
RNF40-202ENST00000357890 KRTAP20-2Q3LI61 65 aa2.39□□□□□ -2.03
RNF40-202ENST00000357890 KRTAP4-11Q9BYQ6 195 aa2.33□□□□□ -2.04
RNF40-202ENST00000357890 KRTAP5-2Q701N4 177 aa2.23□□□□□ -2.05
RNF40-202ENST00000357890 KRTAP5-3Q6L8H2 238 aa2.23□□□□□ -2.05
RNF40-202ENST00000357890 HMCN1Q96RW7 5635 aa2.21□□□□□ -2.06
RNF40-202ENST00000357890 MUC5ACP98088 5654 aa2.21□□□□□ -2.06
RNF40-202ENST00000357890 AHNAK2Q8IVF2 5795 aa2.01□□□□□ -2.09
RNF40-202ENST00000357890 KRTAP5-10Q6L8G5 202 aa2□□□□□ -2.09
RNF40-202ENST00000357890 KRTAP4-4Q9BYR3 166 aa2□□□□□ -2.09
RNF40-202ENST00000357890 KRTAP5-7Q6L8G8 165 aa1.97□□□□□ -2.09
RNF40-202ENST00000357890 LCE1CQ5T751 118 aa1.97□□□□□ -2.09
RNF40-202ENST00000357890 KRTAP5-8O75690 187 aa1.95□□□□□ -2.1
RNF40-202ENST00000357890 KRTAP5-1Q6L8H4 278 aa1.93□□□□□ -2.1
RNF40-202ENST00000357890 KRTAP4-12Q9BQ66 201 aa1.91□□□□□ -2.1
RNF40-202ENST00000357890 KRTAP4-2Q9BYR5 136 aa1.91□□□□□ -2.1
RNF40-202ENST00000357890 AHNAKQ09666 5890 aaKnown RBP1.79□□□□□ -2.12
RNF40-202ENST00000357890 MUC5BQ9HC84 5762 aaPredicted RBP1.79□□□□□ -2.12
RNF40-202ENST00000357890 KRTAP21-2Q3LI59 83 aa1.77□□□□□ -2.13
RNF40-202ENST00000357890 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.75□□□□□ -2.13
RNF40-202ENST00000357890 KRTAP5-11Q6L8G4 156 aa1.69□□□□□ -2.14
RNF40-202ENST00000357890 KRTAP21-1Q3LI58 79 aa1.63□□□□□ -2.15
RNF40-202ENST00000357890 PHGR1C9JFL3 82 aa1.43□□□□□ -2.18
RNF40-202ENST00000357890 MUC16Q8WXI7 14507 aa0.91□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 111 ms