RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 KRTAP19-3Q7Z4W3 81 aa3.31□□□□□ -1.88
UPF2-202ENST00000357604 LCE1AQ5T7P2 110 aa3.3□□□□□ -1.88
UPF2-202ENST00000357604 KRTAP2-3P0C7H8 128 aa3.29□□□□□ -1.88
UPF2-202ENST00000357604 KRTAP2-4Q9BYR9 128 aa3.29□□□□□ -1.88
UPF2-202ENST00000357604 MT1EP04732 61 aa3.28□□□□□ -1.88
UPF2-202ENST00000357604 LCE3BQ5TA77 95 aa3.27□□□□□ -1.89
UPF2-202ENST00000357604 USH2AO75445 5202 aa3.27□□□□□ -1.89
UPF2-202ENST00000357604 SSPOA2VEC9 5147 aa3.25□□□□□ -1.89
UPF2-202ENST00000357604 LCE3CQ5T5A8 94 aa3.25□□□□□ -1.89
UPF2-202ENST00000357604 KRTAP5-9P26371 169 aa3.24□□□□□ -1.89
UPF2-202ENST00000357604 MT1LQ93083 61 aa3.2□□□□□ -1.9
UPF2-202ENST00000357604 NEBP20929 6669 aa3.19□□□□□ -1.9
UPF2-202ENST00000357604 KRTAP2-2Q9BYT5 123 aa3.15□□□□□ -1.9
UPF2-202ENST00000357604 KRTAP2-1Q9BYU5 128 aa3.15□□□□□ -1.9
UPF2-202ENST00000357604 MT1MQ8N339 61 aa3.15□□□□□ -1.91
UPF2-202ENST00000357604 KRTAP19-7Q3SYF9 63 aa3.12□□□□□ -1.91
UPF2-202ENST00000357604 KRTAP12-4P60329 112 aa3.11□□□□□ -1.91
UPF2-202ENST00000357604 MT3P25713 68 aa3.1□□□□□ -1.91
UPF2-202ENST00000357604 SYNE2Q8WXH0 6885 aaKnown RBP3.1□□□□□ -1.91
UPF2-202ENST00000357604 LCE5AQ5TCM9 118 aa3.06□□□□□ -1.92
UPF2-202ENST00000357604 LCE4AQ5TA78 99 aa3.05□□□□□ -1.92
UPF2-202ENST00000357604 FCGBPQ9Y6R7 5405 aaPredicted RBP3.05□□□□□ -1.92
UPF2-202ENST00000357604 FSIP2Q5CZC0 6907 aa3.03□□□□□ -1.92
UPF2-202ENST00000357604 MACF1Q9UPN3 7388 aaKnown RBP2.98□□□□□ -1.93
UPF2-202ENST00000357604 MT4P47944 62 aa2.94□□□□□ -1.94
UPF2-202ENST00000357604 KRTAP4-7Q9BYR0 210 aa2.89□□□□□ -1.95
UPF2-202ENST00000357604 KRTAP4-3Q9BYR4 195 aa2.86□□□□□ -1.95
UPF2-202ENST00000357604 MT1AP04731 61 aa2.85□□□□□ -1.95
UPF2-202ENST00000357604 SPRR5A0A1B0GTR4 108 aa2.78□□□□□ -1.96
UPF2-202ENST00000357604 LOC100996750A0A140TA64 210 aa2.77□□□□□ -1.97
UPF2-202ENST00000357604 KRTAP4-9Q9BYQ8 210 aa2.77□□□□□ -1.97
UPF2-202ENST00000357604 KRTAP9-4Q9BYQ2 154 aa2.71□□□□□ -1.98
UPF2-202ENST00000357604 LCE1DQ5T752 114 aa2.69□□□□□ -1.98
UPF2-202ENST00000357604 KRTAP5-4Q6L8H1 288 aa2.67□□□□□ -1.98
UPF2-202ENST00000357604 KRTAP6-1Q3LI64 71 aa2.63□□□□□ -1.99
UPF2-202ENST00000357604 KRTAP20-2Q3LI61 65 aa2.6□□□□□ -1.99
UPF2-202ENST00000357604 KMT2DO14686 5537 aa2.58□□□□□ -2
UPF2-202ENST00000357604 MDN1Q9NU22 5596 aa2.57□□□□□ -2
UPF2-202ENST00000357604 KRTAP6-2Q3LI66 62 aa2.56□□□□□ -2
UPF2-202ENST00000357604 KRTAP5-5Q701N2 237 aaPredicted RBP2.56□□□□□ -2
UPF2-202ENST00000357604 LCE3DQ9BYE3 92 aa2.55□□□□□ -2
UPF2-202ENST00000357604 KRTAP4-6Q9BYQ5 205 aa2.54□□□□□ -2
UPF2-202ENST00000357604 KRTAP9-6A8MVA2 160 aa2.52□□□□□ -2.01
UPF2-202ENST00000357604 MUC12Q9UKN1 5478 aa2.51□□□□□ -2.01
UPF2-202ENST00000357604 LCE3EQ5T5B0 92 aa2.49□□□□□ -2.01
UPF2-202ENST00000357604 KRTAP9-9Q9BYP9 154 aa2.42□□□□□ -2.02
UPF2-202ENST00000357604 LCE1BQ5T7P3 118 aa2.36□□□□□ -2.03
UPF2-202ENST00000357604 KRTAP5-3Q6L8H2 238 aa2.33□□□□□ -2.04
UPF2-202ENST00000357604 KRTAP4-11Q9BYQ6 195 aa2.32□□□□□ -2.04
UPF2-202ENST00000357604 GPR98Q8WXG9 6306 aa2.3□□□□□ -2.04
UPF2-202ENST00000357604 KRTAP5-2Q701N4 177 aa2.28□□□□□ -2.04
UPF2-202ENST00000357604 LCE1EQ5T753 118 aa2.26□□□□□ -2.05
UPF2-202ENST00000357604 AHNAK2Q8IVF2 5795 aa2.23□□□□□ -2.05
UPF2-202ENST00000357604 KRTAP5-10Q6L8G5 202 aa2.2□□□□□ -2.06
UPF2-202ENST00000357604 HMCN1Q96RW7 5635 aa2.19□□□□□ -2.06
UPF2-202ENST00000357604 KRTAP5-7Q6L8G8 165 aa2.18□□□□□ -2.06
UPF2-202ENST00000357604 DSTQ03001 7570 aaKnown RBP2.11□□□□□ -2.07
UPF2-202ENST00000357604 KRTAP5-8O75690 187 aa2.07□□□□□ -2.08
UPF2-202ENST00000357604 SYNE1Q8NF91 8797 aaKnown RBP2.04□□□□□ -2.08
UPF2-202ENST00000357604 LCE1CQ5T751 118 aa2.02□□□□□ -2.09
UPF2-202ENST00000357604 PRM1P04553 51 aa2.02□□□□□ -2.09
UPF2-202ENST00000357604 MUC5ACP98088 5654 aa2□□□□□ -2.09
UPF2-202ENST00000357604 AHNAKQ09666 5890 aaKnown RBP1.99□□□□□ -2.09
UPF2-202ENST00000357604 MUC5BQ9HC84 5762 aaPredicted RBP1.98□□□□□ -2.09
UPF2-202ENST00000357604 LCE1FQ5T754 118 aa1.96□□□□□ -2.1
UPF2-202ENST00000357604 KRTAP5-1Q6L8H4 278 aa1.96□□□□□ -2.1
UPF2-202ENST00000357604 OBSCNQ5VST9 7968 aa1.88□□□□□ -2.11
UPF2-202ENST00000357604 KRTAP4-2Q9BYR5 136 aa1.84□□□□□ -2.11
UPF2-202ENST00000357604 KRTAP4-12Q9BQ66 201 aa1.81□□□□□ -2.12
UPF2-202ENST00000357604 KRTAP5-11Q6L8G4 156 aa1.79□□□□□ -2.12
UPF2-202ENST00000357604 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.77□□□□□ -2.13
UPF2-202ENST00000357604 KRTAP4-4Q9BYR3 166 aa1.61□□□□□ -2.15
UPF2-202ENST00000357604 KRTAP21-2Q3LI59 83 aa1.59□□□□□ -2.16
UPF2-202ENST00000357604 PHGR1C9JFL3 82 aa1.58□□□□□ -2.16
UPF2-202ENST00000357604 KRTAP21-1Q3LI58 79 aa1.27□□□□□ -2.21
UPF2-202ENST00000357604 MUC19Q7Z5P9 8384 aa1.21□□□□□ -2.22
UPF2-202ENST00000357604 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 95.6 ms