RNA–Protein interactions for RNA: ENST00000346436.10

CLCN6-202, Transcript of chloride voltage-gated channel 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN6, Length 5,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-202ENST00000346436 KRTAP19-3Q7Z4W3 81 aa3.71□□□□□ -1.82
CLCN6-202ENST00000346436 FSIP2Q5CZC0 6907 aa3.7□□□□□ -1.82
CLCN6-202ENST00000346436 KRTAP19-6Q3LI70 58 aa3.69□□□□□ -1.82
CLCN6-202ENST00000346436 KRTAP9-7A8MTY7 169 aa3.65□□□□□ -1.83
CLCN6-202ENST00000346436 MT4P47944 62 aa3.61□□□□□ -1.83
CLCN6-202ENST00000346436 MT3P25713 68 aa3.6□□□□□ -1.83
CLCN6-202ENST00000346436 MT1LQ93083 61 aa3.56□□□□□ -1.84
CLCN6-202ENST00000346436 LCE3DQ9BYE3 92 aa3.54□□□□□ -1.84
CLCN6-202ENST00000346436 KRTAP2-3P0C7H8 128 aa3.53□□□□□ -1.84
CLCN6-202ENST00000346436 KRTAP6-3Q3LI67 103 aa3.53□□□□□ -1.84
CLCN6-202ENST00000346436 KRTAP2-4Q9BYR9 128 aa3.53□□□□□ -1.84
CLCN6-202ENST00000346436 MT1EP04732 61 aa3.53□□□□□ -1.84
CLCN6-202ENST00000346436 LOC100996750A0A140TA64 210 aa3.52□□□□□ -1.85
CLCN6-202ENST00000346436 LCE2AQ5TA79 106 aaPredicted RBP3.52□□□□□ -1.85
CLCN6-202ENST00000346436 KRTAP4-3Q9BYR4 195 aa3.52□□□□□ -1.85
CLCN6-202ENST00000346436 KMT2DO14686 5537 aa3.5□□□□□ -1.85
CLCN6-202ENST00000346436 LCE3EQ5T5B0 92 aa3.48□□□□□ -1.85
CLCN6-202ENST00000346436 USH2AO75445 5202 aa3.47□□□□□ -1.85
CLCN6-202ENST00000346436 KRTAP19-7Q3SYF9 63 aa3.46□□□□□ -1.85
CLCN6-202ENST00000346436 MT1MQ8N339 61 aa3.44□□□□□ -1.86
CLCN6-202ENST00000346436 LCE1AQ5T7P2 110 aa3.42□□□□□ -1.86
CLCN6-202ENST00000346436 KRTAP9-6A8MVA2 160 aa3.42□□□□□ -1.86
CLCN6-202ENST00000346436 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.4□□□□□ -1.86
CLCN6-202ENST00000346436 KRTAP2-2Q9BYT5 123 aa3.38□□□□□ -1.87
CLCN6-202ENST00000346436 KRTAP2-1Q9BYU5 128 aa3.38□□□□□ -1.87
CLCN6-202ENST00000346436 LCE1BQ5T7P3 118 aa3.35□□□□□ -1.87
CLCN6-202ENST00000346436 LCE1DQ5T752 114 aa3.35□□□□□ -1.87
CLCN6-202ENST00000346436 LCE4AQ5TA78 99 aa3.34□□□□□ -1.88
CLCN6-202ENST00000346436 SYNE2Q8WXH0 6885 aaKnown RBP3.31□□□□□ -1.88
CLCN6-202ENST00000346436 KRTAP4-9Q9BYQ8 210 aa3.27□□□□□ -1.89
CLCN6-202ENST00000346436 SYNE1Q8NF91 8797 aaKnown RBP3.27□□□□□ -1.89
CLCN6-202ENST00000346436 FCGBPQ9Y6R7 5405 aaPredicted RBP3.27□□□□□ -1.89
CLCN6-202ENST00000346436 LCE5AQ5TCM9 118 aa3.25□□□□□ -1.89
CLCN6-202ENST00000346436 MT1AP04731 61 aa3.25□□□□□ -1.89
CLCN6-202ENST00000346436 DSTQ03001 7570 aaKnown RBP3.24□□□□□ -1.89
CLCN6-202ENST00000346436 OBSCNQ5VST9 7968 aa3.16□□□□□ -1.9
CLCN6-202ENST00000346436 PRM1P04553 51 aa3.14□□□□□ -1.91
CLCN6-202ENST00000346436 MUC12Q9UKN1 5478 aa3.11□□□□□ -1.91
CLCN6-202ENST00000346436 KRTAP6-1Q3LI64 71 aa3.06□□□□□ -1.92
CLCN6-202ENST00000346436 SSPOA2VEC9 5147 aa3.05□□□□□ -1.92
CLCN6-202ENST00000346436 LCE1CQ5T751 118 aa3.01□□□□□ -1.93
CLCN6-202ENST00000346436 LCE1EQ5T753 118 aa3.01□□□□□ -1.93
CLCN6-202ENST00000346436 LCE1FQ5T754 118 aa3.01□□□□□ -1.93
CLCN6-202ENST00000346436 KRTAP9-9Q9BYP9 154 aa3□□□□□ -1.93
CLCN6-202ENST00000346436 KRTAP9-4Q9BYQ2 154 aa2.97□□□□□ -1.93
CLCN6-202ENST00000346436 MACF1Q9UPN3 7388 aaKnown RBP2.96□□□□□ -1.94
CLCN6-202ENST00000346436 KRTAP6-2Q3LI66 62 aa2.94□□□□□ -1.94
CLCN6-202ENST00000346436 GPR98Q8WXG9 6306 aa2.92□□□□□ -1.94
CLCN6-202ENST00000346436 NEBP20929 6669 aa2.88□□□□□ -1.95
CLCN6-202ENST00000346436 KRTAP5-9P26371 169 aa2.79□□□□□ -1.96
CLCN6-202ENST00000346436 MDN1Q9NU22 5596 aa2.65□□□□□ -1.99
CLCN6-202ENST00000346436 KRTAP20-2Q3LI61 65 aa2.59□□□□□ -1.99
CLCN6-202ENST00000346436 KRTAP5-5Q701N2 237 aaPredicted RBP2.57□□□□□ -2
CLCN6-202ENST00000346436 KRTAP4-6Q9BYQ5 205 aa2.53□□□□□ -2
CLCN6-202ENST00000346436 KRTAP5-4Q6L8H1 288 aa2.51□□□□□ -2.01
CLCN6-202ENST00000346436 KRTAP4-11Q9BYQ6 195 aa2.41□□□□□ -2.02
CLCN6-202ENST00000346436 AHNAK2Q8IVF2 5795 aa2.34□□□□□ -2.04
CLCN6-202ENST00000346436 MUC19Q7Z5P9 8384 aa2.3□□□□□ -2.04
CLCN6-202ENST00000346436 KRTAP5-3Q6L8H2 238 aa2.28□□□□□ -2.04
CLCN6-202ENST00000346436 KRTAP4-12Q9BQ66 201 aa2.26□□□□□ -2.05
CLCN6-202ENST00000346436 KRTAP4-2Q9BYR5 136 aa2.26□□□□□ -2.05
CLCN6-202ENST00000346436 HMCN1Q96RW7 5635 aa2.21□□□□□ -2.06
CLCN6-202ENST00000346436 KRTAP4-4Q9BYR3 166 aa2.19□□□□□ -2.06
CLCN6-202ENST00000346436 MUC5ACP98088 5654 aa2.16□□□□□ -2.06
CLCN6-202ENST00000346436 KRTAP5-8O75690 187 aa2□□□□□ -2.09
CLCN6-202ENST00000346436 PHGR1C9JFL3 82 aa1.98□□□□□ -2.09
CLCN6-202ENST00000346436 KRTAP5-2Q701N4 177 aa1.95□□□□□ -2.1
CLCN6-202ENST00000346436 KRTAP5-10Q6L8G5 202 aa1.95□□□□□ -2.1
CLCN6-202ENST00000346436 AHNAKQ09666 5890 aaKnown RBP1.88□□□□□ -2.11
CLCN6-202ENST00000346436 MUC5BQ9HC84 5762 aaPredicted RBP1.81□□□□□ -2.12
CLCN6-202ENST00000346436 KRTAP5-1Q6L8H4 278 aa1.74□□□□□ -2.13
CLCN6-202ENST00000346436 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
CLCN6-202ENST00000346436 KRTAP5-7Q6L8G8 165 aa1.7□□□□□ -2.14
CLCN6-202ENST00000346436 KRTAP5-11Q6L8G4 156 aa1.69□□□□□ -2.14
CLCN6-202ENST00000346436 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
CLCN6-202ENST00000346436 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.52□□□□□ -2.17
CLCN6-202ENST00000346436 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 11.6 ms