RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 KRTAP9-7A8MTY7 169 aa5.69□□□□□ -1.5
SMARCA4-201ENST00000344626 KRTAP19-3Q7Z4W3 81 aa5.63□□□□□ -1.51
SMARCA4-201ENST00000344626 SYNE2Q8WXH0 6885 aaKnown RBP5.61□□□□□ -1.51
SMARCA4-201ENST00000344626 LCE3BQ5TA77 95 aa5.54□□□□□ -1.52
SMARCA4-201ENST00000344626 MT1EP04732 61 aa5.5□□□□□ -1.53
SMARCA4-201ENST00000344626 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.48□□□□□ -1.53
SMARCA4-201ENST00000344626 MT1LQ93083 61 aa5.47□□□□□ -1.53
SMARCA4-201ENST00000344626 MT4P47944 62 aa5.45□□□□□ -1.54
SMARCA4-201ENST00000344626 KRTAP4-7Q9BYR0 210 aa5.44□□□□□ -1.54
SMARCA4-201ENST00000344626 KRTAP20-1Q3LI63 56 aa5.4□□□□□ -1.54
SMARCA4-201ENST00000344626 KRTAP6-3Q3LI67 103 aa5.36□□□□□ -1.55
SMARCA4-201ENST00000344626 MT1MQ8N339 61 aa5.33□□□□□ -1.56
SMARCA4-201ENST00000344626 SPRR5A0A1B0GTR4 108 aa5.29□□□□□ -1.56
SMARCA4-201ENST00000344626 OBSCNQ5VST9 7968 aa5.26□□□□□ -1.57
SMARCA4-201ENST00000344626 KRTAP4-3Q9BYR4 195 aa5.24□□□□□ -1.57
SMARCA4-201ENST00000344626 KMT2DO14686 5537 aa5.24□□□□□ -1.57
SMARCA4-201ENST00000344626 USH2AO75445 5202 aa5.22□□□□□ -1.57
SMARCA4-201ENST00000344626 KRTAP2-3P0C7H8 128 aa5.18□□□□□ -1.58
SMARCA4-201ENST00000344626 KRTAP2-4Q9BYR9 128 aa5.18□□□□□ -1.58
SMARCA4-201ENST00000344626 KRTAP19-7Q3SYF9 63 aa5.17□□□□□ -1.58
SMARCA4-201ENST00000344626 LCE3DQ9BYE3 92 aa5.17□□□□□ -1.58
SMARCA4-201ENST00000344626 DSTQ03001 7570 aaKnown RBP5.17□□□□□ -1.58
SMARCA4-201ENST00000344626 MACF1Q9UPN3 7388 aaKnown RBP5.14□□□□□ -1.59
SMARCA4-201ENST00000344626 LOC100996750A0A140TA64 210 aa5.1□□□□□ -1.59
SMARCA4-201ENST00000344626 LCE1AQ5T7P2 110 aa5.1□□□□□ -1.59
SMARCA4-201ENST00000344626 MT3P25713 68 aa5.09□□□□□ -1.59
SMARCA4-201ENST00000344626 LCE3EQ5T5B0 92 aa5.07□□□□□ -1.6
SMARCA4-201ENST00000344626 KRTAP2-2Q9BYT5 123 aa5.03□□□□□ -1.6
SMARCA4-201ENST00000344626 KRTAP2-1Q9BYU5 128 aa5.03□□□□□ -1.6
SMARCA4-201ENST00000344626 FCGBPQ9Y6R7 5405 aaPredicted RBP5.02□□□□□ -1.61
SMARCA4-201ENST00000344626 KRTAP4-9Q9BYQ8 210 aa4.99□□□□□ -1.61
SMARCA4-201ENST00000344626 MT1AP04731 61 aa4.91□□□□□ -1.62
SMARCA4-201ENST00000344626 LCE1DQ5T752 114 aa4.89□□□□□ -1.63
SMARCA4-201ENST00000344626 LCE1BQ5T7P3 118 aa4.86□□□□□ -1.63
SMARCA4-201ENST00000344626 LCE5AQ5TCM9 118 aa4.85□□□□□ -1.63
SMARCA4-201ENST00000344626 SSPOA2VEC9 5147 aa4.85□□□□□ -1.63
SMARCA4-201ENST00000344626 MDN1Q9NU22 5596 aa4.83□□□□□ -1.64
SMARCA4-201ENST00000344626 NEBP20929 6669 aa4.79□□□□□ -1.64
SMARCA4-201ENST00000344626 LCE4AQ5TA78 99 aa4.78□□□□□ -1.64
SMARCA4-201ENST00000344626 MUC12Q9UKN1 5478 aa4.7□□□□□ -1.66
SMARCA4-201ENST00000344626 GPR98Q8WXG9 6306 aa4.63□□□□□ -1.67
SMARCA4-201ENST00000344626 KRTAP5-9P26371 169 aa4.62□□□□□ -1.67
SMARCA4-201ENST00000344626 KRTAP6-1Q3LI64 71 aa4.6□□□□□ -1.67
SMARCA4-201ENST00000344626 KRTAP6-2Q3LI66 62 aa4.58□□□□□ -1.68
SMARCA4-201ENST00000344626 KRTAP9-4Q9BYQ2 154 aa4.56□□□□□ -1.68
SMARCA4-201ENST00000344626 KRTAP9-6A8MVA2 160 aa4.44□□□□□ -1.7
SMARCA4-201ENST00000344626 PRM1P04553 51 aa4.44□□□□□ -1.7
SMARCA4-201ENST00000344626 KRTAP4-6Q9BYQ5 205 aa4.29□□□□□ -1.72
SMARCA4-201ENST00000344626 KRTAP9-9Q9BYP9 154 aa4.18□□□□□ -1.74
SMARCA4-201ENST00000344626 KRTAP20-2Q3LI61 65 aa4.12□□□□□ -1.75
SMARCA4-201ENST00000344626 LCE1CQ5T751 118 aa4.12□□□□□ -1.75
SMARCA4-201ENST00000344626 LCE1EQ5T753 118 aa4.12□□□□□ -1.75
SMARCA4-201ENST00000344626 LCE1FQ5T754 118 aa4.12□□□□□ -1.75
SMARCA4-201ENST00000344626 MUC19Q7Z5P9 8384 aa4.1□□□□□ -1.75
SMARCA4-201ENST00000344626 KRTAP5-4Q6L8H1 288 aa3.85□□□□□ -1.79
SMARCA4-201ENST00000344626 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
SMARCA4-201ENST00000344626 MUC5ACP98088 5654 aa3.72□□□□□ -1.81
SMARCA4-201ENST00000344626 KRTAP5-3Q6L8H2 238 aa3.71□□□□□ -1.82
SMARCA4-201ENST00000344626 HMCN1Q96RW7 5635 aa3.64□□□□□ -1.83
SMARCA4-201ENST00000344626 KRTAP5-5Q701N2 237 aaPredicted RBP3.63□□□□□ -1.83
SMARCA4-201ENST00000344626 AHNAK2Q8IVF2 5795 aa3.62□□□□□ -1.83
SMARCA4-201ENST00000344626 KRTAP4-12Q9BQ66 201 aa3.61□□□□□ -1.83
SMARCA4-201ENST00000344626 KRTAP4-2Q9BYR5 136 aa3.61□□□□□ -1.83
SMARCA4-201ENST00000344626 KRTAP4-4Q9BYR3 166 aa3.43□□□□□ -1.86
SMARCA4-201ENST00000344626 KRTAP5-8O75690 187 aa3.33□□□□□ -1.88
SMARCA4-201ENST00000344626 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.91
SMARCA4-201ENST00000344626 AHNAKQ09666 5890 aaKnown RBP3.07□□□□□ -1.92
SMARCA4-201ENST00000344626 KRTAP5-10Q6L8G5 202 aa2.88□□□□□ -1.95
SMARCA4-201ENST00000344626 MUC5BQ9HC84 5762 aaPredicted RBP2.88□□□□□ -1.95
SMARCA4-201ENST00000344626 PHGR1C9JFL3 82 aa2.84□□□□□ -1.95
SMARCA4-201ENST00000344626 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
SMARCA4-201ENST00000344626 KRTAP5-7Q6L8G8 165 aa2.76□□□□□ -1.97
SMARCA4-201ENST00000344626 KRTAP5-11Q6L8G4 156 aa2.68□□□□□ -1.98
SMARCA4-201ENST00000344626 KRTAP21-2Q3LI59 83 aa2.43□□□□□ -2.02
SMARCA4-201ENST00000344626 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.43□□□□□ -2.02
SMARCA4-201ENST00000344626 KRTAP21-1Q3LI58 79 aa1.94□□□□□ -2.1
SMARCA4-201ENST00000344626 MUC16Q8WXI7 14507 aa1.67□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 6.1 ms