RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 MACF1Q9UPN3 7388 aaKnown RBP5.25□□□□□ -1.57
TPM3-208ENST00000341485 KRTAP9-6A8MVA2 160 aa5.25□□□□□ -1.57
TPM3-208ENST00000341485 MT1LQ93083 61 aa5.24□□□□□ -1.57
TPM3-208ENST00000341485 KRTAP4-7Q9BYR0 210 aa5.24□□□□□ -1.57
TPM3-208ENST00000341485 SPRR2FQ96RM1 72 aa5.22□□□□□ -1.57
TPM3-208ENST00000341485 KRTAP4-12Q9BQ66 201 aa5.14□□□□□ -1.59
TPM3-208ENST00000341485 LCE4AQ5TA78 99 aa5.13□□□□□ -1.59
TPM3-208ENST00000341485 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.12□□□□□ -1.59
TPM3-208ENST00000341485 KRTAP19-3Q7Z4W3 81 aa5.11□□□□□ -1.59
TPM3-208ENST00000341485 KRTAP9-7A8MTY7 169 aa5.1□□□□□ -1.59
TPM3-208ENST00000341485 MUC12Q9UKN1 5478 aa5.09□□□□□ -1.59
TPM3-208ENST00000341485 INE1O15225 51 aa5.09□□□□□ -1.59
TPM3-208ENST00000341485 KRTAP5-9P26371 169 aa5.09□□□□□ -1.59
TPM3-208ENST00000341485 SYNE2Q8WXH0 6885 aaKnown RBP5.09□□□□□ -1.59
TPM3-208ENST00000341485 MT1GP13640 62 aa5.06□□□□□ -1.6
TPM3-208ENST00000341485 KRTAP6-3Q3LI67 103 aa5.01□□□□□ -1.61
TPM3-208ENST00000341485 KRTAP2-3P0C7H8 128 aa5.01□□□□□ -1.61
TPM3-208ENST00000341485 MT1MQ8N339 61 aa5.01□□□□□ -1.61
TPM3-208ENST00000341485 KRTAP2-4Q9BYR9 128 aa5.01□□□□□ -1.61
TPM3-208ENST00000341485 KRTAP2-1Q9BYU5 128 aa5.01□□□□□ -1.61
TPM3-208ENST00000341485 LCE5AQ5TCM9 118 aa5□□□□□ -1.61
TPM3-208ENST00000341485 SPRR2EP22531 72 aa4.95□□□□□ -1.62
TPM3-208ENST00000341485 SPRR2BP35325 72 aa4.95□□□□□ -1.62
TPM3-208ENST00000341485 SPRR2AP35326 72 aa4.95□□□□□ -1.62
TPM3-208ENST00000341485 LCE1AQ5T7P2 110 aa4.95□□□□□ -1.62
TPM3-208ENST00000341485 KRTAP4-3Q9BYR4 195 aa4.95□□□□□ -1.62
TPM3-208ENST00000341485 KRTAP9-9Q9BYP9 154 aa4.95□□□□□ -1.62
TPM3-208ENST00000341485 KRTAP9-4Q9BYQ2 154 aa4.95□□□□□ -1.62
TPM3-208ENST00000341485 MDN1Q9NU22 5596 aa4.88□□□□□ -1.63
TPM3-208ENST00000341485 LCE3BQ5TA77 95 aa4.87□□□□□ -1.63
TPM3-208ENST00000341485 SPRR2DP22532 72 aa4.77□□□□□ -1.65
TPM3-208ENST00000341485 DSTQ03001 7570 aaKnown RBP4.65□□□□□ -1.66
TPM3-208ENST00000341485 NEBP20929 6669 aa4.6□□□□□ -1.67
TPM3-208ENST00000341485 LCE1DQ5T752 114 aa4.58□□□□□ -1.68
TPM3-208ENST00000341485 KRTAP5-5Q701N2 237 aaPredicted RBP4.48□□□□□ -1.69
TPM3-208ENST00000341485 MT1AP04731 61 aa4.44□□□□□ -1.7
TPM3-208ENST00000341485 KRTAP6-1Q3LI64 71 aa4.43□□□□□ -1.7
TPM3-208ENST00000341485 KRTAP4-9Q9BYQ8 210 aa4.42□□□□□ -1.7
TPM3-208ENST00000341485 KRTAP12-4P60329 112 aa4.37□□□□□ -1.71
TPM3-208ENST00000341485 KRTAP4-2Q9BYR5 136 aa4.35□□□□□ -1.71
TPM3-208ENST00000341485 KRTAP4-11Q9BYQ6 195 aa4.33□□□□□ -1.72
TPM3-208ENST00000341485 KRTAP20-1Q3LI63 56 aa4.31□□□□□ -1.72
TPM3-208ENST00000341485 KRTAP2-2Q9BYT5 123 aa4.3□□□□□ -1.72
TPM3-208ENST00000341485 KRTAP5-4Q6L8H1 288 aa4.26□□□□□ -1.73
TPM3-208ENST00000341485 SYNE1Q8NF91 8797 aaKnown RBP4.21□□□□□ -1.74
TPM3-208ENST00000341485 MT4P47944 62 aa4.15□□□□□ -1.74
TPM3-208ENST00000341485 LCE3DQ9BYE3 92 aa4.15□□□□□ -1.74
TPM3-208ENST00000341485 LCE3EQ5T5B0 92 aa4.09□□□□□ -1.75
TPM3-208ENST00000341485 KRTAP6-2Q3LI66 62 aa4.05□□□□□ -1.76
TPM3-208ENST00000341485 KRTAP5-3Q6L8H2 238 aa4.05□□□□□ -1.76
TPM3-208ENST00000341485 MT3P25713 68 aa4.03□□□□□ -1.76
TPM3-208ENST00000341485 KRTAP20-2Q3LI61 65 aa4.01□□□□□ -1.77
TPM3-208ENST00000341485 HMCN1Q96RW7 5635 aa3.92□□□□□ -1.78
TPM3-208ENST00000341485 KRTAP5-2Q701N4 177 aa3.86□□□□□ -1.79
TPM3-208ENST00000341485 PRM1P04553 51 aa3.85□□□□□ -1.79
TPM3-208ENST00000341485 LCE1FQ5T754 118 aa3.68□□□□□ -1.82
TPM3-208ENST00000341485 OBSCNQ5VST9 7968 aa3.64□□□□□ -1.83
TPM3-208ENST00000341485 GPR98Q8WXG9 6306 aa3.58□□□□□ -1.84
TPM3-208ENST00000341485 AHNAK2Q8IVF2 5795 aa3.46□□□□□ -1.85
TPM3-208ENST00000341485 LCE1EQ5T753 118 aa3.45□□□□□ -1.86
TPM3-208ENST00000341485 KRTAP5-1Q6L8H4 278 aa3.34□□□□□ -1.87
TPM3-208ENST00000341485 KRTAP5-8O75690 187 aa3.32□□□□□ -1.88
TPM3-208ENST00000341485 MUC5ACP98088 5654 aa3.32□□□□□ -1.88
TPM3-208ENST00000341485 LCE1BQ5T7P3 118 aa3.31□□□□□ -1.88
TPM3-208ENST00000341485 KRTAP5-10Q6L8G5 202 aa3.31□□□□□ -1.88
TPM3-208ENST00000341485 LCE1CQ5T751 118 aa3.23□□□□□ -1.89
TPM3-208ENST00000341485 KRTAP5-7Q6L8G8 165 aa3.2□□□□□ -1.9
TPM3-208ENST00000341485 KRTAP5-6Q6L8G9 129 aaPredicted RBP3□□□□□ -1.93
TPM3-208ENST00000341485 KRTAP5-11Q6L8G4 156 aa2.96□□□□□ -1.94
TPM3-208ENST00000341485 KRTAP21-2Q3LI59 83 aa2.88□□□□□ -1.95
TPM3-208ENST00000341485 MUC5BQ9HC84 5762 aaPredicted RBP2.87□□□□□ -1.95
TPM3-208ENST00000341485 AHNAKQ09666 5890 aaKnown RBP2.78□□□□□ -1.96
TPM3-208ENST00000341485 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
TPM3-208ENST00000341485 PHGR1C9JFL3 82 aa2.44□□□□□ -2.02
TPM3-208ENST00000341485 KRTAP21-1Q3LI58 79 aa2.41□□□□□ -2.02
TPM3-208ENST00000341485 MUC19Q7Z5P9 8384 aa2.26□□□□□ -2.05
TPM3-208ENST00000341485 MUC16Q8WXI7 14507 aa1.58□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 17.7 ms