RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 MT1LQ93083 61 aa4.91□□□□□ -1.62
CPSF7-201ENST00000340437 KRTAP4-3Q9BYR4 195 aa4.88□□□□□ -1.63
CPSF7-201ENST00000340437 MT1EP04732 61 aa4.88□□□□□ -1.63
CPSF7-201ENST00000340437 LOC100996750A0A140TA64 210 aa4.87□□□□□ -1.63
CPSF7-201ENST00000340437 SPRR2FQ96RM1 72 aa4.84□□□□□ -1.63
CPSF7-201ENST00000340437 KRTAP2-3P0C7H8 128 aa4.81□□□□□ -1.64
CPSF7-201ENST00000340437 MT1GP13640 62 aa4.81□□□□□ -1.64
CPSF7-201ENST00000340437 KRTAP2-4Q9BYR9 128 aa4.81□□□□□ -1.64
CPSF7-201ENST00000340437 KRTAP2-1Q9BYU5 128 aa4.81□□□□□ -1.64
CPSF7-201ENST00000340437 MACF1Q9UPN3 7388 aaKnown RBP4.7□□□□□ -1.66
CPSF7-201ENST00000340437 LCE2DQ5TA82 110 aaPredicted RBP4.63□□□□□ -1.67
CPSF7-201ENST00000340437 KRTAP19-6Q3LI70 58 aa4.6□□□□□ -1.67
CPSF7-201ENST00000340437 LCE3BQ5TA77 95 aa4.58□□□□□ -1.68
CPSF7-201ENST00000340437 MT1MQ8N339 61 aa4.58□□□□□ -1.68
CPSF7-201ENST00000340437 KRTAP19-3Q7Z4W3 81 aa4.55□□□□□ -1.68
CPSF7-201ENST00000340437 KRTAP12-4P60329 112 aa4.54□□□□□ -1.68
CPSF7-201ENST00000340437 KRTAP19-4Q3LI73 84 aa4.54□□□□□ -1.68
CPSF7-201ENST00000340437 MDN1Q9NU22 5596 aa4.51□□□□□ -1.69
CPSF7-201ENST00000340437 KRTAP4-9Q9BYQ8 210 aa4.48□□□□□ -1.69
CPSF7-201ENST00000340437 SPRR2EP22531 72 aa4.35□□□□□ -1.71
CPSF7-201ENST00000340437 SPRR2BP35325 72 aa4.35□□□□□ -1.71
CPSF7-201ENST00000340437 SPRR2AP35326 72 aa4.35□□□□□ -1.71
CPSF7-201ENST00000340437 KRTAP9-2Q9BYQ4 174 aa4.34□□□□□ -1.71
CPSF7-201ENST00000340437 LCE5AQ5TCM9 118 aa4.31□□□□□ -1.72
CPSF7-201ENST00000340437 KRTAP6-1Q3LI64 71 aa4.25□□□□□ -1.73
CPSF7-201ENST00000340437 LCE3DQ9BYE3 92 aa4.15□□□□□ -1.74
CPSF7-201ENST00000340437 SPRR2DP22532 72 aa4.13□□□□□ -1.75
CPSF7-201ENST00000340437 KRTAP9-7A8MTY7 169 aa4.1□□□□□ -1.75
CPSF7-201ENST00000340437 LCE3EQ5T5B0 92 aa4.08□□□□□ -1.76
CPSF7-201ENST00000340437 MT1AP04731 61 aa4.06□□□□□ -1.76
CPSF7-201ENST00000340437 PRM1P04553 51 aa4.04□□□□□ -1.76
CPSF7-201ENST00000340437 LCE1AQ5T7P2 110 aa4.03□□□□□ -1.76
CPSF7-201ENST00000340437 MT4P47944 62 aa3.94□□□□□ -1.78
CPSF7-201ENST00000340437 KRTAP5-5Q701N2 237 aaPredicted RBP3.93□□□□□ -1.78
CPSF7-201ENST00000340437 KRTAP6-2Q3LI66 62 aa3.85□□□□□ -1.79
CPSF7-201ENST00000340437 KRTAP9-4Q9BYQ2 154 aa3.83□□□□□ -1.8
CPSF7-201ENST00000340437 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.81□□□□□ -1.8
CPSF7-201ENST00000340437 KRTAP5-9P26371 169 aa3.8□□□□□ -1.8
CPSF7-201ENST00000340437 KRTAP9-6A0A140TA67 174 aa3.74□□□□□ -1.81
CPSF7-201ENST00000340437 MT3P25713 68 aa3.71□□□□□ -1.82
CPSF7-201ENST00000340437 MUC19Q7Z5P9 8384 aa3.63□□□□□ -1.83
CPSF7-201ENST00000340437 KRTAP4-6Q9BYQ5 205 aa3.61□□□□□ -1.83
CPSF7-201ENST00000340437 KRTAP6-3Q3LI67 103 aa3.59□□□□□ -1.83
CPSF7-201ENST00000340437 LCE1DQ5T752 114 aa3.58□□□□□ -1.84
CPSF7-201ENST00000340437 NEBP20929 6669 aa3.58□□□□□ -1.84
CPSF7-201ENST00000340437 LCE1BQ5T7P3 118 aa3.54□□□□□ -1.84
CPSF7-201ENST00000340437 KRTAP2-2Q9BYT5 123 aa3.46□□□□□ -1.86
CPSF7-201ENST00000340437 HMCN1Q96RW7 5635 aa3.36□□□□□ -1.87
CPSF7-201ENST00000340437 MUC5ACP98088 5654 aa3.33□□□□□ -1.88
CPSF7-201ENST00000340437 KRTAP5-4Q6L8H1 288 aa3.28□□□□□ -1.88
CPSF7-201ENST00000340437 KRTAP20-2Q3LI61 65 aa3.25□□□□□ -1.89
CPSF7-201ENST00000340437 KRTAP20-1Q3LI63 56 aa3.18□□□□□ -1.9
CPSF7-201ENST00000340437 LCE4AQ5TA78 99 aa3.15□□□□□ -1.91
CPSF7-201ENST00000340437 KRTAP4-11Q9BYQ6 195 aa3.12□□□□□ -1.91
CPSF7-201ENST00000340437 KRTAP5-2Q701N4 177 aa3.07□□□□□ -1.92
CPSF7-201ENST00000340437 KRTAP5-3Q6L8H2 238 aa2.98□□□□□ -1.93
CPSF7-201ENST00000340437 KRTAP4-4Q9BYR3 166 aa2.96□□□□□ -1.94
CPSF7-201ENST00000340437 LCE1EQ5T753 118 aa2.94□□□□□ -1.94
CPSF7-201ENST00000340437 KRTAP5-10Q6L8G5 202 aa2.9□□□□□ -1.94
CPSF7-201ENST00000340437 MUC5BQ9HC84 5762 aaPredicted RBP2.87□□□□□ -1.95
CPSF7-201ENST00000340437 KRTAP4-12Q9BQ66 201 aa2.85□□□□□ -1.95
CPSF7-201ENST00000340437 KRTAP4-2Q9BYR5 136 aa2.85□□□□□ -1.95
CPSF7-201ENST00000340437 AHNAK2Q8IVF2 5795 aa2.82□□□□□ -1.96
CPSF7-201ENST00000340437 GPR98Q8WXG9 6306 aa2.75□□□□□ -1.97
CPSF7-201ENST00000340437 KRTAP5-1Q6L8H4 278 aa2.73□□□□□ -1.97
CPSF7-201ENST00000340437 LCE1CQ5T751 118 aa2.69□□□□□ -1.98
CPSF7-201ENST00000340437 KRTAP21-2Q3LI59 83 aa2.63□□□□□ -1.99
CPSF7-201ENST00000340437 LCE1FQ5T754 118 aa2.61□□□□□ -1.99
CPSF7-201ENST00000340437 KRTAP5-8O75690 187 aa2.55□□□□□ -2
CPSF7-201ENST00000340437 KRTAP9-9Q9BYP9 154 aa2.44□□□□□ -2.02
CPSF7-201ENST00000340437 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.43□□□□□ -2.02
CPSF7-201ENST00000340437 KRTAP21-1Q3LI58 79 aa2.34□□□□□ -2.03
CPSF7-201ENST00000340437 KRTAP5-7Q6L8G8 165 aa2.28□□□□□ -2.05
CPSF7-201ENST00000340437 KRTAP5-11Q6L8G4 156 aa2.27□□□□□ -2.05
CPSF7-201ENST00000340437 AHNAKQ09666 5890 aaKnown RBP2.22□□□□□ -2.05
CPSF7-201ENST00000340437 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
CPSF7-201ENST00000340437 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 11.7 ms