RNA–Protein interactions for RNA: ENST00000324938.9

LIMS2-201, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS2, Length 2,111 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-201ENST00000324938 KRTAP9-6A0A140TA67 174 aa7.16□□□□□ -1.26
LIMS2-201ENST00000324938 KRTAP2-3P0C7H8 128 aa7.14□□□□□ -1.27
LIMS2-201ENST00000324938 KRTAP2-4Q9BYR9 128 aa7.14□□□□□ -1.27
LIMS2-201ENST00000324938 KRTAP2-1Q9BYU5 128 aa7.14□□□□□ -1.27
LIMS2-201ENST00000324938 CRCT1Q9UGL9 99 aa7.14□□□□□ -1.27
LIMS2-201ENST00000324938 KRTAP19-3Q7Z4W3 81 aa7.12□□□□□ -1.27
LIMS2-201ENST00000324938 MT1GP13640 62 aa7.09□□□□□ -1.27
LIMS2-201ENST00000324938 MT1MQ8N339 61 aa7.08□□□□□ -1.28
LIMS2-201ENST00000324938 KRTAP4-3Q9BYR4 195 aa7.04□□□□□ -1.28
LIMS2-201ENST00000324938 MUC12Q9UKN1 5478 aa7.02□□□□□ -1.29
LIMS2-201ENST00000324938 SPRR2FQ96RM1 72 aa6.95□□□□□ -1.3
LIMS2-201ENST00000324938 LOC100996750A0A140TA64 210 aa6.94□□□□□ -1.3
LIMS2-201ENST00000324938 LCE5AQ5TCM9 118 aa6.92□□□□□ -1.3
LIMS2-201ENST00000324938 MACF1Q9UPN3 7388 aaKnown RBP6.8□□□□□ -1.32
LIMS2-201ENST00000324938 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.64□□□□□ -1.35
LIMS2-201ENST00000324938 KRTAP5-9P26371 169 aa6.64□□□□□ -1.35
LIMS2-201ENST00000324938 SYNE2Q8WXH0 6885 aaKnown RBP6.57□□□□□ -1.36
LIMS2-201ENST00000324938 LCE1AQ5T7P2 110 aa6.56□□□□□ -1.36
LIMS2-201ENST00000324938 DSTQ03001 7570 aaKnown RBP6.54□□□□□ -1.36
LIMS2-201ENST00000324938 KRTAP9-7A8MTY7 169 aa6.47□□□□□ -1.37
LIMS2-201ENST00000324938 MDN1Q9NU22 5596 aa6.46□□□□□ -1.38
LIMS2-201ENST00000324938 SPRR2EP22531 72 aa6.41□□□□□ -1.38
LIMS2-201ENST00000324938 SPRR2BP35325 72 aa6.41□□□□□ -1.38
LIMS2-201ENST00000324938 SPRR2AP35326 72 aa6.41□□□□□ -1.38
LIMS2-201ENST00000324938 MT1AP04731 61 aa6.35□□□□□ -1.39
LIMS2-201ENST00000324938 KRTAP6-1Q3LI64 71 aa6.34□□□□□ -1.39
LIMS2-201ENST00000324938 LCE3BQ5TA77 95 aa6.34□□□□□ -1.4
LIMS2-201ENST00000324938 KRTAP5-5Q701N2 237 aaPredicted RBP6.32□□□□□ -1.4
LIMS2-201ENST00000324938 KRTAP6-3Q3LI67 103 aa6.26□□□□□ -1.41
LIMS2-201ENST00000324938 KRTAP12-4P60329 112 aa6.19□□□□□ -1.42
LIMS2-201ENST00000324938 SPRR2DP22532 72 aa6.15□□□□□ -1.42
LIMS2-201ENST00000324938 KRTAP4-9Q9BYQ8 210 aa6.12□□□□□ -1.43
LIMS2-201ENST00000324938 NEBP20929 6669 aa6.05□□□□□ -1.44
LIMS2-201ENST00000324938 SYNE1Q8NF91 8797 aaKnown RBP6.03□□□□□ -1.44
LIMS2-201ENST00000324938 KRTAP9-4Q9BYQ2 154 aa5.98□□□□□ -1.45
LIMS2-201ENST00000324938 LCE3DQ9BYE3 92 aa5.95□□□□□ -1.46
LIMS2-201ENST00000324938 LCE3EQ5T5B0 92 aa5.85□□□□□ -1.47
LIMS2-201ENST00000324938 KRTAP6-2Q3LI66 62 aa5.72□□□□□ -1.49
LIMS2-201ENST00000324938 MT3P25713 68 aa5.7□□□□□ -1.5
LIMS2-201ENST00000324938 KRTAP5-4Q6L8H1 288 aa5.7□□□□□ -1.5
LIMS2-201ENST00000324938 KRTAP20-1Q3LI63 56 aa5.69□□□□□ -1.5
LIMS2-201ENST00000324938 PRM1P04553 51 aa5.45□□□□□ -1.54
LIMS2-201ENST00000324938 KRTAP2-2Q9BYT5 123 aa5.44□□□□□ -1.54
LIMS2-201ENST00000324938 LCE4AQ5TA78 99 aa5.41□□□□□ -1.54
LIMS2-201ENST00000324938 KRTAP4-6Q9BYQ5 205 aa5.4□□□□□ -1.54
LIMS2-201ENST00000324938 MT4P47944 62 aa5.36□□□□□ -1.55
LIMS2-201ENST00000324938 KRTAP20-2Q3LI61 65 aa5.32□□□□□ -1.56
LIMS2-201ENST00000324938 KRTAP5-2Q701N4 177 aa5.29□□□□□ -1.56
LIMS2-201ENST00000324938 OBSCNQ5VST9 7968 aa5.27□□□□□ -1.57
LIMS2-201ENST00000324938 LCE1DQ5T752 114 aa5.14□□□□□ -1.59
LIMS2-201ENST00000324938 HMCN1Q96RW7 5635 aa5.13□□□□□ -1.59
LIMS2-201ENST00000324938 KRTAP5-3Q6L8H2 238 aa5.09□□□□□ -1.59
LIMS2-201ENST00000324938 LCE1EQ5T753 118 aa4.77□□□□□ -1.65
LIMS2-201ENST00000324938 MUC5ACP98088 5654 aa4.72□□□□□ -1.65
LIMS2-201ENST00000324938 GPR98Q8WXG9 6306 aa4.64□□□□□ -1.67
LIMS2-201ENST00000324938 AHNAK2Q8IVF2 5795 aa4.62□□□□□ -1.67
LIMS2-201ENST00000324938 LCE1BQ5T7P3 118 aa4.56□□□□□ -1.68
LIMS2-201ENST00000324938 KRTAP5-10Q6L8G5 202 aa4.54□□□□□ -1.68
LIMS2-201ENST00000324938 KRTAP5-1Q6L8H4 278 aa4.49□□□□□ -1.69
LIMS2-201ENST00000324938 KRTAP4-2Q9BYR5 136 aa4.49□□□□□ -1.69
LIMS2-201ENST00000324938 LCE1CQ5T751 118 aa4.48□□□□□ -1.69
LIMS2-201ENST00000324938 KRTAP4-11Q9BYQ6 195 aa4.44□□□□□ -1.7
LIMS2-201ENST00000324938 KRTAP5-8O75690 187 aa4.27□□□□□ -1.73
LIMS2-201ENST00000324938 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.25□□□□□ -1.73
LIMS2-201ENST00000324938 KRTAP5-7Q6L8G8 165 aa4.24□□□□□ -1.73
LIMS2-201ENST00000324938 KRTAP21-2Q3LI59 83 aa4.13□□□□□ -1.75
LIMS2-201ENST00000324938 KRTAP5-11Q6L8G4 156 aa3.89□□□□□ -1.79
LIMS2-201ENST00000324938 MUC5BQ9HC84 5762 aaPredicted RBP3.79□□□□□ -1.8
LIMS2-201ENST00000324938 KRTAP9-9Q9BYP9 154 aa3.78□□□□□ -1.8
LIMS2-201ENST00000324938 LCE1FQ5T754 118 aa3.73□□□□□ -1.81
LIMS2-201ENST00000324938 AHNAKQ09666 5890 aaKnown RBP3.69□□□□□ -1.82
LIMS2-201ENST00000324938 KRTAP4-4Q9BYR3 166 aa3.67□□□□□ -1.82
LIMS2-201ENST00000324938 KRTAP4-12Q9BQ66 201 aa3.58□□□□□ -1.84
LIMS2-201ENST00000324938 KRTAP21-1Q3LI58 79 aa3.43□□□□□ -1.86
LIMS2-201ENST00000324938 PHGR1C9JFL3 82 aa3.35□□□□□ -1.87
LIMS2-201ENST00000324938 MUC19Q7Z5P9 8384 aa3.24□□□□□ -1.89
LIMS2-201ENST00000324938 MUC16Q8WXI7 14507 aa2.25□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 110.3 ms