RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 KRTAP2-1Q9BYU5 128 aa4.7□□□□□ -1.66
TCOF1-201ENST00000323668 KRTAP9-6A8MVA2 160 aa4.68□□□□□ -1.66
TCOF1-201ENST00000323668 KRTAP19-6Q3LI70 58 aa4.67□□□□□ -1.66
TCOF1-201ENST00000323668 MT1MQ8N339 61 aa4.66□□□□□ -1.66
TCOF1-201ENST00000323668 LOC100996750A0A140TA64 210 aa4.64□□□□□ -1.67
TCOF1-201ENST00000323668 KRTAP4-3Q9BYR4 195 aa4.63□□□□□ -1.67
TCOF1-201ENST00000323668 SYNE1Q8NF91 8797 aaKnown RBP4.63□□□□□ -1.67
TCOF1-201ENST00000323668 LCE3DQ9BYE3 92 aa4.6□□□□□ -1.67
TCOF1-201ENST00000323668 SPRR2EP22531 72 aa4.56□□□□□ -1.68
TCOF1-201ENST00000323668 SPRR2BP35325 72 aa4.56□□□□□ -1.68
TCOF1-201ENST00000323668 SPRR2AP35326 72 aa4.56□□□□□ -1.68
TCOF1-201ENST00000323668 LCE3EQ5T5B0 92 aa4.54□□□□□ -1.68
TCOF1-201ENST00000323668 USH2AO75445 5202 aa4.46□□□□□ -1.7
TCOF1-201ENST00000323668 KMT2DO14686 5537 aa4.45□□□□□ -1.7
TCOF1-201ENST00000323668 SPRR2DP22532 72 aa4.38□□□□□ -1.71
TCOF1-201ENST00000323668 FCGBPQ9Y6R7 5405 aaPredicted RBP4.34□□□□□ -1.71
TCOF1-201ENST00000323668 KRTAP4-9Q9BYQ8 210 aa4.3□□□□□ -1.72
TCOF1-201ENST00000323668 DSTQ03001 7570 aaKnown RBP4.3□□□□□ -1.72
TCOF1-201ENST00000323668 MT1AP04731 61 aa4.28□□□□□ -1.72
TCOF1-201ENST00000323668 LCE2DQ5TA82 110 aaPredicted RBP4.27□□□□□ -1.73
TCOF1-201ENST00000323668 PRM1P04553 51 aa4.26□□□□□ -1.73
TCOF1-201ENST00000323668 LCE5AQ5TCM9 118 aa4.24□□□□□ -1.73
TCOF1-201ENST00000323668 OBSCNQ5VST9 7968 aa4.23□□□□□ -1.73
TCOF1-201ENST00000323668 MT3P25713 68 aa4.2□□□□□ -1.74
TCOF1-201ENST00000323668 KRTAP6-1Q3LI64 71 aa4.16□□□□□ -1.74
TCOF1-201ENST00000323668 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
TCOF1-201ENST00000323668 MUC12Q9UKN1 5478 aa4.08□□□□□ -1.76
TCOF1-201ENST00000323668 KRTAP9-2Q9BYQ4 174 aa4.08□□□□□ -1.76
TCOF1-201ENST00000323668 SSPOA2VEC9 5147 aa4.05□□□□□ -1.76
TCOF1-201ENST00000323668 LCE1AQ5T7P2 110 aa4□□□□□ -1.77
TCOF1-201ENST00000323668 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
TCOF1-201ENST00000323668 KRTAP9-7A8MTY7 169 aa3.94□□□□□ -1.78
TCOF1-201ENST00000323668 KRTAP6-2Q3LI66 62 aa3.93□□□□□ -1.78
TCOF1-201ENST00000323668 MT4P47944 62 aa3.9□□□□□ -1.79
TCOF1-201ENST00000323668 MACF1Q9UPN3 7388 aaKnown RBP3.84□□□□□ -1.79
TCOF1-201ENST00000323668 LCE1DQ5T752 114 aa3.75□□□□□ -1.81
TCOF1-201ENST00000323668 KRTAP6-3Q3LI67 103 aa3.75□□□□□ -1.81
TCOF1-201ENST00000323668 LCE1BQ5T7P3 118 aa3.71□□□□□ -1.82
TCOF1-201ENST00000323668 KRTAP5-9P26371 169 aa3.69□□□□□ -1.82
TCOF1-201ENST00000323668 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.62□□□□□ -1.83
TCOF1-201ENST00000323668 KRTAP9-6A0A140TA67 174 aa3.6□□□□□ -1.83
TCOF1-201ENST00000323668 KRTAP2-2Q9BYT5 123 aa3.56□□□□□ -1.84
TCOF1-201ENST00000323668 KRTAP5-5Q701N2 237 aaPredicted RBP3.55□□□□□ -1.84
TCOF1-201ENST00000323668 LCE4AQ5TA78 99 aa3.54□□□□□ -1.84
TCOF1-201ENST00000323668 MDN1Q9NU22 5596 aa3.52□□□□□ -1.85
TCOF1-201ENST00000323668 KRTAP4-6Q9BYQ5 205 aa3.36□□□□□ -1.87
TCOF1-201ENST00000323668 KRTAP20-1Q3LI63 56 aa3.33□□□□□ -1.88
TCOF1-201ENST00000323668 KRTAP20-2Q3LI61 65 aa3.28□□□□□ -1.88
TCOF1-201ENST00000323668 KRTAP4-11Q9BYQ6 195 aa3.18□□□□□ -1.9
TCOF1-201ENST00000323668 NEBP20929 6669 aa3.17□□□□□ -1.9
TCOF1-201ENST00000323668 MUC19Q7Z5P9 8384 aa3.13□□□□□ -1.91
TCOF1-201ENST00000323668 KRTAP5-4Q6L8H1 288 aa3.08□□□□□ -1.92
TCOF1-201ENST00000323668 LCE1CQ5T751 118 aa3.01□□□□□ -1.93
TCOF1-201ENST00000323668 LCE1EQ5T753 118 aa3.01□□□□□ -1.93
TCOF1-201ENST00000323668 LCE1FQ5T754 118 aa3.01□□□□□ -1.93
TCOF1-201ENST00000323668 MUC5ACP98088 5654 aa2.89□□□□□ -1.95
TCOF1-201ENST00000323668 GPR98Q8WXG9 6306 aa2.87□□□□□ -1.95
TCOF1-201ENST00000323668 KRTAP9-9Q9BYP9 154 aa2.83□□□□□ -1.96
TCOF1-201ENST00000323668 KRTAP5-2Q701N4 177 aa2.82□□□□□ -1.96
TCOF1-201ENST00000323668 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
TCOF1-201ENST00000323668 HMCN1Q96RW7 5635 aa2.78□□□□□ -1.96
TCOF1-201ENST00000323668 KRTAP5-10Q6L8G5 202 aa2.75□□□□□ -1.97
TCOF1-201ENST00000323668 KRTAP5-3Q6L8H2 238 aa2.72□□□□□ -1.97
TCOF1-201ENST00000323668 KRTAP4-12Q9BQ66 201 aa2.65□□□□□ -1.99
TCOF1-201ENST00000323668 KRTAP4-2Q9BYR5 136 aa2.65□□□□□ -1.99
TCOF1-201ENST00000323668 AHNAK2Q8IVF2 5795 aa2.46□□□□□ -2.02
TCOF1-201ENST00000323668 KRTAP5-1Q6L8H4 278 aa2.43□□□□□ -2.02
TCOF1-201ENST00000323668 KRTAP21-2Q3LI59 83 aa2.4□□□□□ -2.03
TCOF1-201ENST00000323668 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
TCOF1-201ENST00000323668 KRTAP5-11Q6L8G4 156 aa2.31□□□□□ -2.04
TCOF1-201ENST00000323668 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.3□□□□□ -2.04
TCOF1-201ENST00000323668 MUC5BQ9HC84 5762 aaPredicted RBP2.24□□□□□ -2.05
TCOF1-201ENST00000323668 KRTAP21-1Q3LI58 79 aa2.21□□□□□ -2.05
TCOF1-201ENST00000323668 KRTAP5-7Q6L8G8 165 aa2.05□□□□□ -2.08
TCOF1-201ENST00000323668 AHNAKQ09666 5890 aaKnown RBP2.03□□□□□ -2.08
TCOF1-201ENST00000323668 PHGR1C9JFL3 82 aa1.95□□□□□ -2.1
TCOF1-201ENST00000323668 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 12.3 ms