RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 KRTAP4-8Q9BYQ9 185 aa3.01□□□□□ -1.93
PDLIM5-201ENST00000317968 KRTAP20-1Q3LI63 56 aa2.98□□□□□ -1.93
PDLIM5-201ENST00000317968 KRTAP19-3Q7Z4W3 81 aa2.98□□□□□ -1.93
PDLIM5-201ENST00000317968 MT1LQ93083 61 aa2.97□□□□□ -1.93
PDLIM5-201ENST00000317968 KRTAP19-7Q3SYF9 63 aa2.96□□□□□ -1.94
PDLIM5-201ENST00000317968 KRTAP9-7A8MTY7 169 aa2.95□□□□□ -1.94
PDLIM5-201ENST00000317968 LCE3BQ5TA77 95 aa2.93□□□□□ -1.94
PDLIM5-201ENST00000317968 KRTAP6-3Q3LI67 103 aa2.92□□□□□ -1.94
PDLIM5-201ENST00000317968 LCE1AQ5T7P2 110 aa2.89□□□□□ -1.95
PDLIM5-201ENST00000317968 KRTAP2-3P0C7H8 128 aa2.86□□□□□ -1.95
PDLIM5-201ENST00000317968 KRTAP2-4Q9BYR9 128 aa2.86□□□□□ -1.95
PDLIM5-201ENST00000317968 MT1MQ8N339 61 aa2.86□□□□□ -1.95
PDLIM5-201ENST00000317968 SSPOA2VEC9 5147 aa2.83□□□□□ -1.96
PDLIM5-201ENST00000317968 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.82□□□□□ -1.96
PDLIM5-201ENST00000317968 FSIP2Q5CZC0 6907 aa2.81□□□□□ -1.96
PDLIM5-201ENST00000317968 KRTAP5-9P26371 169 aa2.79□□□□□ -1.96
PDLIM5-201ENST00000317968 MT4P47944 62 aa2.78□□□□□ -1.96
PDLIM5-201ENST00000317968 FCGBPQ9Y6R7 5405 aaPredicted RBP2.78□□□□□ -1.96
PDLIM5-201ENST00000317968 LCE5AQ5TCM9 118 aa2.77□□□□□ -1.97
PDLIM5-201ENST00000317968 KRTAP2-2Q9BYT5 123 aa2.73□□□□□ -1.97
PDLIM5-201ENST00000317968 KRTAP2-1Q9BYU5 128 aa2.73□□□□□ -1.97
PDLIM5-201ENST00000317968 MT3P25713 68 aa2.73□□□□□ -1.97
PDLIM5-201ENST00000317968 LCE4AQ5TA78 99 aa2.71□□□□□ -1.98
PDLIM5-201ENST00000317968 KRTAP4-7Q9BYR0 210 aa2.69□□□□□ -1.98
PDLIM5-201ENST00000317968 LCE3DQ9BYE3 92 aa2.67□□□□□ -1.98
PDLIM5-201ENST00000317968 MT1AP04731 61 aa2.64□□□□□ -1.99
PDLIM5-201ENST00000317968 LCE3EQ5T5B0 92 aa2.61□□□□□ -1.99
PDLIM5-201ENST00000317968 KRTAP4-3Q9BYR4 195 aa2.59□□□□□ -1.99
PDLIM5-201ENST00000317968 MACF1Q9UPN3 7388 aaKnown RBP2.58□□□□□ -2
PDLIM5-201ENST00000317968 KRTAP9-6A8MVA2 160 aa2.56□□□□□ -2
PDLIM5-201ENST00000317968 KMT2DO14686 5537 aa2.55□□□□□ -2
PDLIM5-201ENST00000317968 LOC100996750A0A140TA64 210 aa2.52□□□□□ -2.01
PDLIM5-201ENST00000317968 LCE1DQ5T752 114 aa2.5□□□□□ -2.01
PDLIM5-201ENST00000317968 SYNE2Q8WXH0 6885 aaKnown RBP2.5□□□□□ -2.01
PDLIM5-201ENST00000317968 NEBP20929 6669 aa2.49□□□□□ -2.01
PDLIM5-201ENST00000317968 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
PDLIM5-201ENST00000317968 MDN1Q9NU22 5596 aa2.48□□□□□ -2.01
PDLIM5-201ENST00000317968 SYNE1Q8NF91 8797 aaKnown RBP2.45□□□□□ -2.02
PDLIM5-201ENST00000317968 MUC12Q9UKN1 5478 aa2.44□□□□□ -2.02
PDLIM5-201ENST00000317968 KRTAP9-4Q9BYQ2 154 aa2.44□□□□□ -2.02
PDLIM5-201ENST00000317968 KRTAP4-6Q9BYQ5 205 aa2.43□□□□□ -2.02
PDLIM5-201ENST00000317968 KRTAP6-1Q3LI64 71 aa2.42□□□□□ -2.02
PDLIM5-201ENST00000317968 KRTAP4-9Q9BYQ8 210 aa2.42□□□□□ -2.02
PDLIM5-201ENST00000317968 KRTAP5-5Q701N2 237 aaPredicted RBP2.35□□□□□ -2.03
PDLIM5-201ENST00000317968 KRTAP9-9Q9BYP9 154 aa2.34□□□□□ -2.04
PDLIM5-201ENST00000317968 DSTQ03001 7570 aaKnown RBP2.31□□□□□ -2.04
PDLIM5-201ENST00000317968 KRTAP6-2Q3LI66 62 aa2.3□□□□□ -2.04
PDLIM5-201ENST00000317968 KRTAP5-4Q6L8H1 288 aa2.3□□□□□ -2.04
PDLIM5-201ENST00000317968 KRTAP20-2Q3LI61 65 aa2.23□□□□□ -2.05
PDLIM5-201ENST00000317968 OBSCNQ5VST9 7968 aa2.22□□□□□ -2.05
PDLIM5-201ENST00000317968 LCE1CQ5T751 118 aa2.21□□□□□ -2.06
PDLIM5-201ENST00000317968 LCE1EQ5T753 118 aa2.21□□□□□ -2.06
PDLIM5-201ENST00000317968 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
PDLIM5-201ENST00000317968 PRM1P04553 51 aa2.19□□□□□ -2.06
PDLIM5-201ENST00000317968 KRTAP5-2Q701N4 177 aa2.06□□□□□ -2.08
PDLIM5-201ENST00000317968 KRTAP5-3Q6L8H2 238 aa2.01□□□□□ -2.09
PDLIM5-201ENST00000317968 GPR98Q8WXG9 6306 aa1.99□□□□□ -2.09
PDLIM5-201ENST00000317968 KRTAP4-11Q9BYQ6 195 aa1.96□□□□□ -2.09
PDLIM5-201ENST00000317968 HMCN1Q96RW7 5635 aa1.96□□□□□ -2.1
PDLIM5-201ENST00000317968 KRTAP4-12Q9BQ66 201 aa1.95□□□□□ -2.1
PDLIM5-201ENST00000317968 KRTAP4-2Q9BYR5 136 aa1.94□□□□□ -2.1
PDLIM5-201ENST00000317968 KRTAP5-8O75690 187 aa1.82□□□□□ -2.12
PDLIM5-201ENST00000317968 AHNAK2Q8IVF2 5795 aa1.81□□□□□ -2.12
PDLIM5-201ENST00000317968 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.76□□□□□ -2.13
PDLIM5-201ENST00000317968 MUC5ACP98088 5654 aa1.76□□□□□ -2.13
PDLIM5-201ENST00000317968 KRTAP5-10Q6L8G5 202 aa1.74□□□□□ -2.13
PDLIM5-201ENST00000317968 KRTAP5-1Q6L8H4 278 aa1.73□□□□□ -2.13
PDLIM5-201ENST00000317968 KRTAP5-7Q6L8G8 165 aa1.72□□□□□ -2.13
PDLIM5-201ENST00000317968 AHNAKQ09666 5890 aaKnown RBP1.64□□□□□ -2.15
PDLIM5-201ENST00000317968 KRTAP5-11Q6L8G4 156 aa1.63□□□□□ -2.15
PDLIM5-201ENST00000317968 KRTAP4-4Q9BYR3 166 aa1.59□□□□□ -2.16
PDLIM5-201ENST00000317968 MUC5BQ9HC84 5762 aaPredicted RBP1.58□□□□□ -2.16
PDLIM5-201ENST00000317968 PHGR1C9JFL3 82 aa1.52□□□□□ -2.17
PDLIM5-201ENST00000317968 MUC19Q7Z5P9 8384 aa1.51□□□□□ -2.17
PDLIM5-201ENST00000317968 KRTAP21-2Q3LI59 83 aa1.51□□□□□ -2.17
PDLIM5-201ENST00000317968 KRTAP21-1Q3LI58 79 aa1.22□□□□□ -2.21
PDLIM5-201ENST00000317968 MUC16Q8WXI7 14507 aa0.85□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 11.3 ms