RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 FCGBPQ9Y6R7 5405 aaPredicted RBP7.31□□□□□ -1.24
SHMT1-201ENST00000316694 MUC12Q9UKN1 5478 aa7.24□□□□□ -1.25
SHMT1-201ENST00000316694 KRTAP4-3Q9BYR4 195 aa7.22□□□□□ -1.25
SHMT1-201ENST00000316694 LOC100996750A0A140TA64 210 aa7.21□□□□□ -1.25
SHMT1-201ENST00000316694 LCE2DQ5TA82 110 aaPredicted RBP7.19□□□□□ -1.26
SHMT1-201ENST00000316694 MT1GP13640 62 aa7.13□□□□□ -1.27
SHMT1-201ENST00000316694 MT1MQ8N339 61 aa7.06□□□□□ -1.28
SHMT1-201ENST00000316694 KRTAP19-3Q7Z4W3 81 aa7.05□□□□□ -1.28
SHMT1-201ENST00000316694 CRCT1Q9UGL9 99 aa7.04□□□□□ -1.28
SHMT1-201ENST00000316694 DSTQ03001 7570 aaKnown RBP6.95□□□□□ -1.3
SHMT1-201ENST00000316694 SPRR2FQ96RM1 72 aa6.87□□□□□ -1.31
SHMT1-201ENST00000316694 MACF1Q9UPN3 7388 aaKnown RBP6.85□□□□□ -1.31
SHMT1-201ENST00000316694 LCE5AQ5TCM9 118 aa6.82□□□□□ -1.32
SHMT1-201ENST00000316694 KRTAP12-4P60329 112 aa6.73□□□□□ -1.33
SHMT1-201ENST00000316694 SYNE2Q8WXH0 6885 aaKnown RBP6.68□□□□□ -1.34
SHMT1-201ENST00000316694 KRTAP9-2Q9BYQ4 174 aa6.65□□□□□ -1.35
SHMT1-201ENST00000316694 LCE3BQ5TA77 95 aa6.64□□□□□ -1.35
SHMT1-201ENST00000316694 MDN1Q9NU22 5596 aa6.6□□□□□ -1.35
SHMT1-201ENST00000316694 KRTAP4-9Q9BYQ8 210 aa6.52□□□□□ -1.37
SHMT1-201ENST00000316694 KRTAP6-1Q3LI64 71 aa6.45□□□□□ -1.38
SHMT1-201ENST00000316694 SYNE1Q8NF91 8797 aaKnown RBP6.4□□□□□ -1.38
SHMT1-201ENST00000316694 LCE1AQ5T7P2 110 aa6.39□□□□□ -1.39
SHMT1-201ENST00000316694 MT1AP04731 61 aa6.36□□□□□ -1.39
SHMT1-201ENST00000316694 KRTAP5-9P26371 169 aa6.34□□□□□ -1.4
SHMT1-201ENST00000316694 LCE3DQ9BYE3 92 aa6.25□□□□□ -1.41
SHMT1-201ENST00000316694 SPRR2EP22531 72 aa6.25□□□□□ -1.41
SHMT1-201ENST00000316694 SPRR2BP35325 72 aa6.25□□□□□ -1.41
SHMT1-201ENST00000316694 SPRR2AP35326 72 aa6.25□□□□□ -1.41
SHMT1-201ENST00000316694 KRTAP5-5Q701N2 237 aaPredicted RBP6.21□□□□□ -1.42
SHMT1-201ENST00000316694 KRTAP9-6A0A140TA67 174 aa6.18□□□□□ -1.42
SHMT1-201ENST00000316694 LCE3EQ5T5B0 92 aa6.17□□□□□ -1.42
SHMT1-201ENST00000316694 KRTAP9-7A8MTY7 169 aa6.05□□□□□ -1.44
SHMT1-201ENST00000316694 PRM1P04553 51 aa5.97□□□□□ -1.45
SHMT1-201ENST00000316694 SPRR2DP22532 72 aa5.97□□□□□ -1.45
SHMT1-201ENST00000316694 KRTAP9-4Q9BYQ2 154 aa5.97□□□□□ -1.45
SHMT1-201ENST00000316694 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.9□□□□□ -1.47
SHMT1-201ENST00000316694 OBSCNQ5VST9 7968 aa5.83□□□□□ -1.48
SHMT1-201ENST00000316694 KRTAP6-3Q3LI67 103 aa5.81□□□□□ -1.48
SHMT1-201ENST00000316694 KRTAP6-2Q3LI66 62 aa5.78□□□□□ -1.48
SHMT1-201ENST00000316694 MT3P25713 68 aa5.7□□□□□ -1.5
SHMT1-201ENST00000316694 KRTAP5-4Q6L8H1 288 aa5.48□□□□□ -1.53
SHMT1-201ENST00000316694 NEBP20929 6669 aa5.44□□□□□ -1.54
SHMT1-201ENST00000316694 KRTAP4-6Q9BYQ5 205 aa5.37□□□□□ -1.55
SHMT1-201ENST00000316694 MT4P47944 62 aa5.32□□□□□ -1.56
SHMT1-201ENST00000316694 KRTAP2-2Q9BYT5 123 aa5.22□□□□□ -1.57
SHMT1-201ENST00000316694 KRTAP20-2Q3LI61 65 aa5.18□□□□□ -1.58
SHMT1-201ENST00000316694 LCE4AQ5TA78 99 aa5.11□□□□□ -1.59
SHMT1-201ENST00000316694 KRTAP5-2Q701N4 177 aa5.11□□□□□ -1.59
SHMT1-201ENST00000316694 HMCN1Q96RW7 5635 aa5.1□□□□□ -1.59
SHMT1-201ENST00000316694 LCE1DQ5T752 114 aa4.98□□□□□ -1.61
SHMT1-201ENST00000316694 KRTAP20-1Q3LI63 56 aa4.98□□□□□ -1.61
SHMT1-201ENST00000316694 KRTAP5-3Q6L8H2 238 aa4.92□□□□□ -1.62
SHMT1-201ENST00000316694 MUC5ACP98088 5654 aa4.84□□□□□ -1.63
SHMT1-201ENST00000316694 LCE1BQ5T7P3 118 aa4.66□□□□□ -1.66
SHMT1-201ENST00000316694 LCE1EQ5T753 118 aa4.6□□□□□ -1.67
SHMT1-201ENST00000316694 KRTAP5-10Q6L8G5 202 aa4.54□□□□□ -1.68
SHMT1-201ENST00000316694 KRTAP4-11Q9BYQ6 195 aa4.51□□□□□ -1.69
SHMT1-201ENST00000316694 KRTAP5-1Q6L8H4 278 aa4.45□□□□□ -1.7
SHMT1-201ENST00000316694 KRTAP4-2Q9BYR5 136 aa4.42□□□□□ -1.7
SHMT1-201ENST00000316694 LCE1CQ5T751 118 aa4.36□□□□□ -1.71
SHMT1-201ENST00000316694 KRTAP21-2Q3LI59 83 aa4.14□□□□□ -1.75
SHMT1-201ENST00000316694 KRTAP5-8O75690 187 aa4.11□□□□□ -1.75
SHMT1-201ENST00000316694 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.09□□□□□ -1.75
SHMT1-201ENST00000316694 AHNAK2Q8IVF2 5795 aa4.07□□□□□ -1.76
SHMT1-201ENST00000316694 KRTAP5-7Q6L8G8 165 aa3.98□□□□□ -1.77
SHMT1-201ENST00000316694 KRTAP4-4Q9BYR3 166 aa3.86□□□□□ -1.79
SHMT1-201ENST00000316694 GPR98Q8WXG9 6306 aa3.83□□□□□ -1.8
SHMT1-201ENST00000316694 MUC5BQ9HC84 5762 aaPredicted RBP3.78□□□□□ -1.8
SHMT1-201ENST00000316694 KRTAP5-11Q6L8G4 156 aa3.75□□□□□ -1.81
SHMT1-201ENST00000316694 KRTAP21-1Q3LI58 79 aa3.71□□□□□ -1.82
SHMT1-201ENST00000316694 MUC19Q7Z5P9 8384 aa3.7□□□□□ -1.82
SHMT1-201ENST00000316694 KRTAP4-12Q9BQ66 201 aa3.65□□□□□ -1.82
SHMT1-201ENST00000316694 KRTAP9-9Q9BYP9 154 aa3.46□□□□□ -1.86
SHMT1-201ENST00000316694 PHGR1C9JFL3 82 aa3.26□□□□□ -1.89
SHMT1-201ENST00000316694 LCE1FQ5T754 118 aa3.15□□□□□ -1.91
SHMT1-201ENST00000316694 AHNAKQ09666 5890 aaKnown RBP3.12□□□□□ -1.91
SHMT1-201ENST00000316694 MUC16Q8WXI7 14507 aa2.14□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 13.9 ms