RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 SSPOA2VEC9 5147 aa4.51□□□□□ -1.69
SKA3-202ENST00000314759 KRTAP19-6Q3LI70 58 aa4.4□□□□□ -1.7
SKA3-202ENST00000314759 LOC100996750A0A140TA64 210 aa4.39□□□□□ -1.71
SKA3-202ENST00000314759 KRTAP4-3Q9BYR4 195 aa4.37□□□□□ -1.71
SKA3-202ENST00000314759 KRTAP9-2Q9BYQ4 174 aa4.36□□□□□ -1.71
SKA3-202ENST00000314759 MT1GP13640 62 aa4.32□□□□□ -1.72
SKA3-202ENST00000314759 FCGBPQ9Y6R7 5405 aaPredicted RBP4.29□□□□□ -1.72
SKA3-202ENST00000314759 MUC12Q9UKN1 5478 aa4.28□□□□□ -1.72
SKA3-202ENST00000314759 KRTAP12-4P60329 112 aa4.26□□□□□ -1.73
SKA3-202ENST00000314759 MT1MQ8N339 61 aa4.25□□□□□ -1.73
SKA3-202ENST00000314759 SYNE2Q8WXH0 6885 aaKnown RBP4.24□□□□□ -1.73
SKA3-202ENST00000314759 MACF1Q9UPN3 7388 aaKnown RBP4.24□□□□□ -1.73
SKA3-202ENST00000314759 KRTAP19-3Q7Z4W3 81 aa4.23□□□□□ -1.73
SKA3-202ENST00000314759 CRCT1Q9UGL9 99 aa4.22□□□□□ -1.73
SKA3-202ENST00000314759 DSTQ03001 7570 aaKnown RBP4.14□□□□□ -1.75
SKA3-202ENST00000314759 LCE5AQ5TCM9 118 aa4.07□□□□□ -1.76
SKA3-202ENST00000314759 KRTAP4-9Q9BYQ8 210 aa4.06□□□□□ -1.76
SKA3-202ENST00000314759 LCE3BQ5TA77 95 aa4.03□□□□□ -1.76
SKA3-202ENST00000314759 KRTAP4-6Q9BYQ5 205 aa4.03□□□□□ -1.76
SKA3-202ENST00000314759 KRTAP9-7A8MTY7 169 aa4.01□□□□□ -1.77
SKA3-202ENST00000314759 SPRR2FQ96RM1 72 aa4□□□□□ -1.77
SKA3-202ENST00000314759 MDN1Q9NU22 5596 aa3.99□□□□□ -1.77
SKA3-202ENST00000314759 SYNE1Q8NF91 8797 aaKnown RBP3.98□□□□□ -1.77
SKA3-202ENST00000314759 MT1AP04731 61 aa3.92□□□□□ -1.78
SKA3-202ENST00000314759 KRTAP6-1Q3LI64 71 aa3.91□□□□□ -1.78
SKA3-202ENST00000314759 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.8
SKA3-202ENST00000314759 KRTAP5-5Q701N2 237 aaPredicted RBP3.83□□□□□ -1.8
SKA3-202ENST00000314759 PRM1P04553 51 aa3.81□□□□□ -1.8
SKA3-202ENST00000314759 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
SKA3-202ENST00000314759 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.77□□□□□ -1.81
SKA3-202ENST00000314759 KRTAP5-9P26371 169 aa3.77□□□□□ -1.81
SKA3-202ENST00000314759 LCE1AQ5T7P2 110 aa3.72□□□□□ -1.81
SKA3-202ENST00000314759 OBSCNQ5VST9 7968 aa3.67□□□□□ -1.82
SKA3-202ENST00000314759 SPRR2EP22531 72 aa3.64□□□□□ -1.83
SKA3-202ENST00000314759 SPRR2BP35325 72 aa3.64□□□□□ -1.83
SKA3-202ENST00000314759 SPRR2AP35326 72 aa3.64□□□□□ -1.83
SKA3-202ENST00000314759 KRTAP6-2Q3LI66 62 aa3.61□□□□□ -1.83
SKA3-202ENST00000314759 KRTAP9-4Q9BYQ2 154 aa3.6□□□□□ -1.83
SKA3-202ENST00000314759 KRTAP20-1Q3LI63 56 aa3.52□□□□□ -1.85
SKA3-202ENST00000314759 KRTAP6-3Q3LI67 103 aa3.51□□□□□ -1.85
SKA3-202ENST00000314759 NEBP20929 6669 aa3.48□□□□□ -1.85
SKA3-202ENST00000314759 SPRR2DP22532 72 aa3.48□□□□□ -1.85
SKA3-202ENST00000314759 MT3P25713 68 aa3.43□□□□□ -1.86
SKA3-202ENST00000314759 KRTAP4-12Q9BQ66 201 aa3.42□□□□□ -1.86
SKA3-202ENST00000314759 GPR98Q8WXG9 6306 aa3.4□□□□□ -1.87
SKA3-202ENST00000314759 KRTAP2-2Q9BYT5 123 aa3.38□□□□□ -1.87
SKA3-202ENST00000314759 LCE1DQ5T752 114 aa3.26□□□□□ -1.89
SKA3-202ENST00000314759 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
SKA3-202ENST00000314759 KRTAP9-9Q9BYP9 154 aa3.25□□□□□ -1.89
SKA3-202ENST00000314759 MT4P47944 62 aa3.19□□□□□ -1.9
SKA3-202ENST00000314759 LCE4AQ5TA78 99 aa3.09□□□□□ -1.91
SKA3-202ENST00000314759 HMCN1Q96RW7 5635 aa3.09□□□□□ -1.92
SKA3-202ENST00000314759 KRTAP5-3Q6L8H2 238 aa3.06□□□□□ -1.92
SKA3-202ENST00000314759 LCE1EQ5T753 118 aa3.05□□□□□ -1.92
SKA3-202ENST00000314759 KRTAP4-2Q9BYR5 136 aa3.04□□□□□ -1.92
SKA3-202ENST00000314759 KRTAP5-2Q701N4 177 aa3.03□□□□□ -1.92
SKA3-202ENST00000314759 KRTAP20-2Q3LI61 65 aa3.03□□□□□ -1.93
SKA3-202ENST00000314759 KRTAP4-11Q9BYQ6 195 aa3□□□□□ -1.93
SKA3-202ENST00000314759 MUC5ACP98088 5654 aa2.96□□□□□ -1.94
SKA3-202ENST00000314759 KRTAP5-7Q6L8G8 165 aa2.93□□□□□ -1.94
SKA3-202ENST00000314759 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
SKA3-202ENST00000314759 AHNAKQ09666 5890 aaKnown RBP2.84□□□□□ -1.95
SKA3-202ENST00000314759 MUC5BQ9HC84 5762 aaPredicted RBP2.84□□□□□ -1.96
SKA3-202ENST00000314759 KRTAP5-10Q6L8G5 202 aa2.79□□□□□ -1.96
SKA3-202ENST00000314759 LCE1BQ5T7P3 118 aa2.77□□□□□ -1.97
SKA3-202ENST00000314759 AHNAK2Q8IVF2 5795 aa2.75□□□□□ -1.97
SKA3-202ENST00000314759 KRTAP5-1Q6L8H4 278 aa2.73□□□□□ -1.97
SKA3-202ENST00000314759 LCE1CQ5T751 118 aa2.62□□□□□ -1.99
SKA3-202ENST00000314759 KRTAP21-2Q3LI59 83 aa2.52□□□□□ -2.01
SKA3-202ENST00000314759 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.48□□□□□ -2.01
SKA3-202ENST00000314759 KRTAP5-8O75690 187 aa2.43□□□□□ -2.02
SKA3-202ENST00000314759 MUC19Q7Z5P9 8384 aa2.4□□□□□ -2.02
SKA3-202ENST00000314759 KRTAP21-1Q3LI58 79 aa2.39□□□□□ -2.03
SKA3-202ENST00000314759 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
SKA3-202ENST00000314759 KRTAP5-11Q6L8G4 156 aa2.24□□□□□ -2.05
SKA3-202ENST00000314759 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
SKA3-202ENST00000314759 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 156.9 ms