RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 KRTAP4-3Q9BYR4 195 aa8.22□□□□□ -1.09
SPTSSA-201ENST00000298130 LOC100996750A0A140TA64 210 aa8.19□□□□□ -1.1
SPTSSA-201ENST00000298130 DSTQ03001 7570 aaKnown RBP8.09□□□□□ -1.11
SPTSSA-201ENST00000298130 KRTAP19-6Q3LI70 58 aa8.07□□□□□ -1.12
SPTSSA-201ENST00000298130 CRCT1Q9UGL9 99 aa8.04□□□□□ -1.12
SPTSSA-201ENST00000298130 MT1GP13640 62 aa8.03□□□□□ -1.12
SPTSSA-201ENST00000298130 LCE2DQ5TA82 110 aaPredicted RBP8.02□□□□□ -1.13
SPTSSA-201ENST00000298130 KRTAP19-4Q3LI73 84 aa7.91□□□□□ -1.14
SPTSSA-201ENST00000298130 MT1MQ8N339 61 aa7.84□□□□□ -1.15
SPTSSA-201ENST00000298130 KRTAP19-3Q7Z4W3 81 aa7.8□□□□□ -1.16
SPTSSA-201ENST00000298130 MACF1Q9UPN3 7388 aaKnown RBP7.65□□□□□ -1.18
SPTSSA-201ENST00000298130 SPRR2FQ96RM1 72 aa7.64□□□□□ -1.19
SPTSSA-201ENST00000298130 SYNE1Q8NF91 8797 aaKnown RBP7.59□□□□□ -1.19
SPTSSA-201ENST00000298130 SYNE2Q8WXH0 6885 aaKnown RBP7.51□□□□□ -1.21
SPTSSA-201ENST00000298130 LCE5AQ5TCM9 118 aa7.5□□□□□ -1.21
SPTSSA-201ENST00000298130 KRTAP12-4P60329 112 aa7.48□□□□□ -1.21
SPTSSA-201ENST00000298130 LCE3BQ5TA77 95 aa7.47□□□□□ -1.21
SPTSSA-201ENST00000298130 KRTAP4-9Q9BYQ8 210 aa7.43□□□□□ -1.22
SPTSSA-201ENST00000298130 MDN1Q9NU22 5596 aa7.41□□□□□ -1.22
SPTSSA-201ENST00000298130 KRTAP6-1Q3LI64 71 aa7.23□□□□□ -1.25
SPTSSA-201ENST00000298130 KRTAP9-2Q9BYQ4 174 aa7.22□□□□□ -1.25
SPTSSA-201ENST00000298130 OBSCNQ5VST9 7968 aa7.07□□□□□ -1.28
SPTSSA-201ENST00000298130 LCE1AQ5T7P2 110 aa7□□□□□ -1.29
SPTSSA-201ENST00000298130 MT1AP04731 61 aa6.97□□□□□ -1.29
SPTSSA-201ENST00000298130 LCE3DQ9BYE3 92 aa6.9□□□□□ -1.3
SPTSSA-201ENST00000298130 SPRR2EP22531 72 aa6.87□□□□□ -1.31
SPTSSA-201ENST00000298130 SPRR2BP35325 72 aa6.87□□□□□ -1.31
SPTSSA-201ENST00000298130 SPRR2AP35326 72 aa6.87□□□□□ -1.31
SPTSSA-201ENST00000298130 KRTAP5-9P26371 169 aa6.86□□□□□ -1.31
SPTSSA-201ENST00000298130 KRTAP5-5Q701N2 237 aaPredicted RBP6.83□□□□□ -1.32
SPTSSA-201ENST00000298130 KRTAP9-7A8MTY7 169 aa6.81□□□□□ -1.32
SPTSSA-201ENST00000298130 LCE3EQ5T5B0 92 aa6.79□□□□□ -1.32
SPTSSA-201ENST00000298130 PRM1P04553 51 aa6.65□□□□□ -1.35
SPTSSA-201ENST00000298130 KRTAP9-4Q9BYQ2 154 aa6.57□□□□□ -1.36
SPTSSA-201ENST00000298130 SPRR2DP22532 72 aa6.54□□□□□ -1.36
SPTSSA-201ENST00000298130 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.48□□□□□ -1.37
SPTSSA-201ENST00000298130 KRTAP6-2Q3LI66 62 aa6.48□□□□□ -1.37
SPTSSA-201ENST00000298130 KRTAP6-3Q3LI67 103 aa6.41□□□□□ -1.38
SPTSSA-201ENST00000298130 KRTAP9-6A0A140TA67 174 aa6.31□□□□□ -1.4
SPTSSA-201ENST00000298130 MT3P25713 68 aa6.26□□□□□ -1.41
SPTSSA-201ENST00000298130 NEBP20929 6669 aa6.07□□□□□ -1.44
SPTSSA-201ENST00000298130 KRTAP4-6Q9BYQ5 205 aa5.98□□□□□ -1.45
SPTSSA-201ENST00000298130 MT4P47944 62 aa5.95□□□□□ -1.46
SPTSSA-201ENST00000298130 KRTAP5-4Q6L8H1 288 aa5.89□□□□□ -1.47
SPTSSA-201ENST00000298130 KRTAP2-2Q9BYT5 123 aa5.76□□□□□ -1.49
SPTSSA-201ENST00000298130 KRTAP20-2Q3LI61 65 aa5.66□□□□□ -1.5
SPTSSA-201ENST00000298130 HMCN1Q96RW7 5635 aa5.63□□□□□ -1.51
SPTSSA-201ENST00000298130 LCE4AQ5TA78 99 aa5.55□□□□□ -1.52
SPTSSA-201ENST00000298130 KRTAP5-2Q701N4 177 aa5.52□□□□□ -1.53
SPTSSA-201ENST00000298130 MUC5ACP98088 5654 aa5.47□□□□□ -1.53
SPTSSA-201ENST00000298130 LCE1DQ5T752 114 aa5.46□□□□□ -1.53
SPTSSA-201ENST00000298130 KRTAP5-3Q6L8H2 238 aa5.32□□□□□ -1.56
SPTSSA-201ENST00000298130 LCE1BQ5T7P3 118 aa5.29□□□□□ -1.56
SPTSSA-201ENST00000298130 KRTAP20-1Q3LI63 56 aa5.28□□□□□ -1.56
SPTSSA-201ENST00000298130 KRTAP4-11Q9BYQ6 195 aa5.1□□□□□ -1.59
SPTSSA-201ENST00000298130 KRTAP5-10Q6L8G5 202 aa5.02□□□□□ -1.61
SPTSSA-201ENST00000298130 LCE1EQ5T753 118 aa4.95□□□□□ -1.62
SPTSSA-201ENST00000298130 KRTAP4-2Q9BYR5 136 aa4.88□□□□□ -1.63
SPTSSA-201ENST00000298130 KRTAP5-1Q6L8H4 278 aa4.85□□□□□ -1.63
SPTSSA-201ENST00000298130 LCE1CQ5T751 118 aa4.74□□□□□ -1.65
SPTSSA-201ENST00000298130 KRTAP21-2Q3LI59 83 aa4.59□□□□□ -1.67
SPTSSA-201ENST00000298130 AHNAK2Q8IVF2 5795 aa4.49□□□□□ -1.69
SPTSSA-201ENST00000298130 KRTAP4-4Q9BYR3 166 aa4.48□□□□□ -1.69
SPTSSA-201ENST00000298130 MUC19Q7Z5P9 8384 aa4.48□□□□□ -1.69
SPTSSA-201ENST00000298130 KRTAP5-8O75690 187 aa4.46□□□□□ -1.7
SPTSSA-201ENST00000298130 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.4□□□□□ -1.71
SPTSSA-201ENST00000298130 MUC5BQ9HC84 5762 aaPredicted RBP4.31□□□□□ -1.72
SPTSSA-201ENST00000298130 KRTAP5-7Q6L8G8 165 aa4.28□□□□□ -1.72
SPTSSA-201ENST00000298130 KRTAP4-12Q9BQ66 201 aa4.19□□□□□ -1.74
SPTSSA-201ENST00000298130 KRTAP5-11Q6L8G4 156 aa4.04□□□□□ -1.76
SPTSSA-201ENST00000298130 KRTAP21-1Q3LI58 79 aa4.03□□□□□ -1.76
SPTSSA-201ENST00000298130 GPR98Q8WXG9 6306 aa3.92□□□□□ -1.78
SPTSSA-201ENST00000298130 KRTAP9-9Q9BYP9 154 aa3.85□□□□□ -1.79
SPTSSA-201ENST00000298130 LCE1FQ5T754 118 aa3.57□□□□□ -1.84
SPTSSA-201ENST00000298130 PHGR1C9JFL3 82 aa3.54□□□□□ -1.84
SPTSSA-201ENST00000298130 AHNAKQ09666 5890 aaKnown RBP3.22□□□□□ -1.89
SPTSSA-201ENST00000298130 MUC16Q8WXI7 14507 aa2.4□□□□□ -2.03
Retrieved 77 of 20,778 RNA–protein pairs in 6.3 ms