RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 KRTAP19-7Q3SYF9 63 aa3.36□□□□□ -1.87
CLDN1-201ENST00000295522 SYNE1Q8NF91 8797 aaKnown RBP3.35□□□□□ -1.87
CLDN1-201ENST00000295522 FCGBPQ9Y6R7 5405 aaPredicted RBP3.35□□□□□ -1.87
CLDN1-201ENST00000295522 KRTAP9-2Q9BYQ4 174 aa3.33□□□□□ -1.88
CLDN1-201ENST00000295522 OBSCNQ5VST9 7968 aa3.32□□□□□ -1.88
CLDN1-201ENST00000295522 MT1GP13640 62 aa3.32□□□□□ -1.88
CLDN1-201ENST00000295522 MT1LQ93083 61 aa3.32□□□□□ -1.88
CLDN1-201ENST00000295522 KRTAP4-3Q9BYR4 195 aa3.31□□□□□ -1.88
CLDN1-201ENST00000295522 MT1EP04732 61 aa3.25□□□□□ -1.89
CLDN1-201ENST00000295522 MUC12Q9UKN1 5478 aa3.24□□□□□ -1.89
CLDN1-201ENST00000295522 LCE3BQ5TA77 95 aa3.24□□□□□ -1.89
CLDN1-201ENST00000295522 KRTAP4-9Q9BYQ8 210 aa3.23□□□□□ -1.89
CLDN1-201ENST00000295522 SYNE2Q8WXH0 6885 aaKnown RBP3.21□□□□□ -1.9
CLDN1-201ENST00000295522 MACF1Q9UPN3 7388 aaKnown RBP3.21□□□□□ -1.9
CLDN1-201ENST00000295522 KRTAP4-6Q9BYQ5 205 aa3.2□□□□□ -1.9
CLDN1-201ENST00000295522 KRTAP19-6Q3LI70 58 aa3.19□□□□□ -1.9
CLDN1-201ENST00000295522 PRM1P04553 51 aa3.11□□□□□ -1.91
CLDN1-201ENST00000295522 KRTAP9-7A8MTY7 169 aa3.09□□□□□ -1.91
CLDN1-201ENST00000295522 KRTAP19-4Q3LI73 84 aa3.08□□□□□ -1.92
CLDN1-201ENST00000295522 KRTAP9-6A0A140TA67 174 aa3.05□□□□□ -1.92
CLDN1-201ENST00000295522 SPRR2FQ96RM1 72 aa3.05□□□□□ -1.92
CLDN1-201ENST00000295522 MT1MQ8N339 61 aa3.03□□□□□ -1.92
CLDN1-201ENST00000295522 LCE3DQ9BYE3 92 aa3.03□□□□□ -1.92
CLDN1-201ENST00000295522 MDN1Q9NU22 5596 aa3.03□□□□□ -1.92
CLDN1-201ENST00000295522 LCE3EQ5T5B0 92 aa3□□□□□ -1.93
CLDN1-201ENST00000295522 KRTAP19-3Q7Z4W3 81 aa2.99□□□□□ -1.93
CLDN1-201ENST00000295522 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.94□□□□□ -1.94
CLDN1-201ENST00000295522 KRTAP6-1Q3LI64 71 aa2.88□□□□□ -1.95
CLDN1-201ENST00000295522 KRTAP5-5Q701N2 237 aaPredicted RBP2.88□□□□□ -1.95
CLDN1-201ENST00000295522 KRTAP6-2Q3LI66 62 aa2.84□□□□□ -1.95
CLDN1-201ENST00000295522 LCE1AQ5T7P2 110 aa2.84□□□□□ -1.96
CLDN1-201ENST00000295522 KRTAP6-3Q3LI67 103 aa2.83□□□□□ -1.96
CLDN1-201ENST00000295522 MT1AP04731 61 aa2.83□□□□□ -1.96
CLDN1-201ENST00000295522 SPRR2EP22531 72 aa2.81□□□□□ -1.96
CLDN1-201ENST00000295522 SPRR2BP35325 72 aa2.81□□□□□ -1.96
CLDN1-201ENST00000295522 SPRR2AP35326 72 aa2.81□□□□□ -1.96
CLDN1-201ENST00000295522 LCE5AQ5TCM9 118 aa2.8□□□□□ -1.96
CLDN1-201ENST00000295522 KRTAP5-9P26371 169 aa2.78□□□□□ -1.96
CLDN1-201ENST00000295522 KRTAP2-2Q9BYT5 123 aa2.72□□□□□ -1.97
CLDN1-201ENST00000295522 SPRR2DP22532 72 aa2.7□□□□□ -1.98
CLDN1-201ENST00000295522 LCE1EQ5T753 118 aa2.7□□□□□ -1.98
CLDN1-201ENST00000295522 NEBP20929 6669 aa2.68□□□□□ -1.98
CLDN1-201ENST00000295522 KRTAP4-12Q9BQ66 201 aa2.67□□□□□ -1.98
CLDN1-201ENST00000295522 HMCN1Q96RW7 5635 aa2.63□□□□□ -1.99
CLDN1-201ENST00000295522 KRTAP9-9Q9BYP9 154 aa2.61□□□□□ -1.99
CLDN1-201ENST00000295522 KRTAP9-4Q9BYQ2 154 aa2.61□□□□□ -1.99
CLDN1-201ENST00000295522 LCE1DQ5T752 114 aa2.55□□□□□ -2
CLDN1-201ENST00000295522 KRTAP5-3Q6L8H2 238 aa2.53□□□□□ -2
CLDN1-201ENST00000295522 MT3P25713 68 aa2.51□□□□□ -2.01
CLDN1-201ENST00000295522 MUC19Q7Z5P9 8384 aa2.47□□□□□ -2.01
CLDN1-201ENST00000295522 KRTAP20-1Q3LI63 56 aa2.45□□□□□ -2.02
CLDN1-201ENST00000295522 MT4P47944 62 aa2.45□□□□□ -2.02
CLDN1-201ENST00000295522 KRTAP4-2Q9BYR5 136 aa2.45□□□□□ -2.02
CLDN1-201ENST00000295522 KRTAP4-11Q9BYQ6 195 aa2.37□□□□□ -2.03
CLDN1-201ENST00000295522 KRTAP5-4Q6L8H1 288 aa2.29□□□□□ -2.04
CLDN1-201ENST00000295522 LCE4AQ5TA78 99 aa2.25□□□□□ -2.05
CLDN1-201ENST00000295522 LCE1BQ5T7P3 118 aa2.23□□□□□ -2.05
CLDN1-201ENST00000295522 KRTAP20-2Q3LI61 65 aa2.23□□□□□ -2.05
CLDN1-201ENST00000295522 LCE1FQ5T754 118 aa2.22□□□□□ -2.05
CLDN1-201ENST00000295522 MUC5ACP98088 5654 aa2.19□□□□□ -2.06
CLDN1-201ENST00000295522 KRTAP5-2Q701N4 177 aa2.05□□□□□ -2.08
CLDN1-201ENST00000295522 KRTAP5-10Q6L8G5 202 aa2.04□□□□□ -2.08
CLDN1-201ENST00000295522 AHNAK2Q8IVF2 5795 aa2.02□□□□□ -2.09
CLDN1-201ENST00000295522 MUC5BQ9HC84 5762 aaPredicted RBP1.98□□□□□ -2.09
CLDN1-201ENST00000295522 KRTAP4-4Q9BYR3 166 aa1.93□□□□□ -2.1
CLDN1-201ENST00000295522 GPR98Q8WXG9 6306 aa1.91□□□□□ -2.1
CLDN1-201ENST00000295522 KRTAP5-8O75690 187 aa1.86□□□□□ -2.11
CLDN1-201ENST00000295522 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.86□□□□□ -2.11
CLDN1-201ENST00000295522 KRTAP5-1Q6L8H4 278 aa1.85□□□□□ -2.11
CLDN1-201ENST00000295522 LCE1CQ5T751 118 aa1.82□□□□□ -2.12
CLDN1-201ENST00000295522 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
CLDN1-201ENST00000295522 KRTAP21-2Q3LI59 83 aa1.74□□□□□ -2.13
CLDN1-201ENST00000295522 KRTAP5-7Q6L8G8 165 aa1.67□□□□□ -2.14
CLDN1-201ENST00000295522 KRTAP5-11Q6L8G4 156 aa1.55□□□□□ -2.16
CLDN1-201ENST00000295522 AHNAKQ09666 5890 aaKnown RBP1.53□□□□□ -2.17
CLDN1-201ENST00000295522 PHGR1C9JFL3 82 aa1.31□□□□□ -2.2
CLDN1-201ENST00000295522 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 6.6 ms