RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 KRTAP4-3Q9BYR4 195 aa4.88□□□□□ -1.63
CCNF-201ENST00000293968 MT1GP13640 62 aa4.85□□□□□ -1.63
CCNF-201ENST00000293968 KRTAP19-4Q3LI73 84 aa4.76□□□□□ -1.65
CCNF-201ENST00000293968 SSPOA2VEC9 5147 aa4.75□□□□□ -1.65
CCNF-201ENST00000293968 DSTQ03001 7570 aaKnown RBP4.74□□□□□ -1.65
CCNF-201ENST00000293968 MUC12Q9UKN1 5478 aa4.72□□□□□ -1.65
CCNF-201ENST00000293968 KRTAP12-4P60329 112 aa4.71□□□□□ -1.66
CCNF-201ENST00000293968 FCGBPQ9Y6R7 5405 aaPredicted RBP4.69□□□□□ -1.66
CCNF-201ENST00000293968 MT1MQ8N339 61 aa4.63□□□□□ -1.67
CCNF-201ENST00000293968 LCE2DQ5TA82 110 aaPredicted RBP4.61□□□□□ -1.67
CCNF-201ENST00000293968 KRTAP19-3Q7Z4W3 81 aa4.6□□□□□ -1.67
CCNF-201ENST00000293968 LCE3BQ5TA77 95 aa4.6□□□□□ -1.67
CCNF-201ENST00000293968 SYNE1Q8NF91 8797 aaKnown RBP4.59□□□□□ -1.68
CCNF-201ENST00000293968 KRTAP19-6Q3LI70 58 aa4.58□□□□□ -1.68
CCNF-201ENST00000293968 SPRR2FQ96RM1 72 aa4.53□□□□□ -1.68
CCNF-201ENST00000293968 KRTAP4-9Q9BYQ8 210 aa4.53□□□□□ -1.68
CCNF-201ENST00000293968 SYNE2Q8WXH0 6885 aaKnown RBP4.39□□□□□ -1.71
CCNF-201ENST00000293968 LCE5AQ5TCM9 118 aa4.33□□□□□ -1.72
CCNF-201ENST00000293968 OBSCNQ5VST9 7968 aa4.33□□□□□ -1.72
CCNF-201ENST00000293968 LCE3DQ9BYE3 92 aa4.29□□□□□ -1.72
CCNF-201ENST00000293968 KRTAP6-1Q3LI64 71 aa4.29□□□□□ -1.72
CCNF-201ENST00000293968 MACF1Q9UPN3 7388 aaKnown RBP4.27□□□□□ -1.73
CCNF-201ENST00000293968 LCE3EQ5T5B0 92 aa4.23□□□□□ -1.73
CCNF-201ENST00000293968 KRTAP9-2Q9BYQ4 174 aa4.22□□□□□ -1.73
CCNF-201ENST00000293968 KRTAP9-7A8MTY7 169 aa4.21□□□□□ -1.74
CCNF-201ENST00000293968 PRM1P04553 51 aa4.2□□□□□ -1.74
CCNF-201ENST00000293968 MT1AP04731 61 aa4.16□□□□□ -1.74
CCNF-201ENST00000293968 MDN1Q9NU22 5596 aa4.15□□□□□ -1.74
CCNF-201ENST00000293968 KRTAP5-5Q701N2 237 aaPredicted RBP4.05□□□□□ -1.76
CCNF-201ENST00000293968 SPRR2EP22531 72 aa4.03□□□□□ -1.76
CCNF-201ENST00000293968 SPRR2BP35325 72 aa4.03□□□□□ -1.76
CCNF-201ENST00000293968 SPRR2AP35326 72 aa4.03□□□□□ -1.76
CCNF-201ENST00000293968 LCE1AQ5T7P2 110 aa3.99□□□□□ -1.77
CCNF-201ENST00000293968 KRTAP6-2Q3LI66 62 aa3.97□□□□□ -1.77
CCNF-201ENST00000293968 KRTAP9-4Q9BYQ2 154 aa3.89□□□□□ -1.79
CCNF-201ENST00000293968 SPRR2DP22532 72 aa3.83□□□□□ -1.8
CCNF-201ENST00000293968 MT3P25713 68 aa3.79□□□□□ -1.8
CCNF-201ENST00000293968 KRTAP5-9P26371 169 aa3.76□□□□□ -1.81
CCNF-201ENST00000293968 KRTAP9-6A0A140TA67 174 aa3.66□□□□□ -1.82
CCNF-201ENST00000293968 KRTAP6-3Q3LI67 103 aa3.66□□□□□ -1.82
CCNF-201ENST00000293968 KRTAP2-2Q9BYT5 123 aa3.62□□□□□ -1.83
CCNF-201ENST00000293968 MT4P47944 62 aa3.51□□□□□ -1.85
CCNF-201ENST00000293968 KRTAP4-6Q9BYQ5 205 aa3.42□□□□□ -1.86
CCNF-201ENST00000293968 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.37□□□□□ -1.87
CCNF-201ENST00000293968 LCE1DQ5T752 114 aa3.34□□□□□ -1.88
CCNF-201ENST00000293968 KRTAP5-4Q6L8H1 288 aa3.27□□□□□ -1.89
CCNF-201ENST00000293968 LCE1BQ5T7P3 118 aa3.26□□□□□ -1.89
CCNF-201ENST00000293968 KRTAP20-2Q3LI61 65 aa3.23□□□□□ -1.89
CCNF-201ENST00000293968 MUC5ACP98088 5654 aa3.21□□□□□ -1.9
CCNF-201ENST00000293968 NEBP20929 6669 aa3.2□□□□□ -1.9
CCNF-201ENST00000293968 KRTAP4-11Q9BYQ6 195 aa3.2□□□□□ -1.9
CCNF-201ENST00000293968 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
CCNF-201ENST00000293968 HMCN1Q96RW7 5635 aa3.13□□□□□ -1.91
CCNF-201ENST00000293968 LCE4AQ5TA78 99 aa3.11□□□□□ -1.91
CCNF-201ENST00000293968 KRTAP5-2Q701N4 177 aa3.08□□□□□ -1.92
CCNF-201ENST00000293968 LCE1FQ5T754 118 aa2.98□□□□□ -1.93
CCNF-201ENST00000293968 KRTAP5-10Q6L8G5 202 aa2.98□□□□□ -1.93
CCNF-201ENST00000293968 MUC19Q7Z5P9 8384 aa2.95□□□□□ -1.94
CCNF-201ENST00000293968 KRTAP5-3Q6L8H2 238 aa2.94□□□□□ -1.94
CCNF-201ENST00000293968 KRTAP20-1Q3LI63 56 aa2.92□□□□□ -1.94
CCNF-201ENST00000293968 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
CCNF-201ENST00000293968 KRTAP4-2Q9BYR5 136 aa2.79□□□□□ -1.96
CCNF-201ENST00000293968 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
CCNF-201ENST00000293968 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
CCNF-201ENST00000293968 KRTAP21-2Q3LI59 83 aa2.66□□□□□ -1.98
CCNF-201ENST00000293968 KRTAP9-9Q9BYP9 154 aa2.6□□□□□ -1.99
CCNF-201ENST00000293968 KRTAP4-12Q9BQ66 201 aa2.5□□□□□ -2.01
CCNF-201ENST00000293968 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.48□□□□□ -2.01
CCNF-201ENST00000293968 AHNAK2Q8IVF2 5795 aa2.48□□□□□ -2.01
CCNF-201ENST00000293968 KRTAP21-1Q3LI58 79 aa2.47□□□□□ -2.01
CCNF-201ENST00000293968 KRTAP5-8O75690 187 aa2.44□□□□□ -2.02
CCNF-201ENST00000293968 MUC5BQ9HC84 5762 aaPredicted RBP2.43□□□□□ -2.02
CCNF-201ENST00000293968 GPR98Q8WXG9 6306 aa2.38□□□□□ -2.03
CCNF-201ENST00000293968 KRTAP5-11Q6L8G4 156 aa2.3□□□□□ -2.04
CCNF-201ENST00000293968 KRTAP5-7Q6L8G8 165 aa2.25□□□□□ -2.05
CCNF-201ENST00000293968 PHGR1C9JFL3 82 aa2.02□□□□□ -2.09
CCNF-201ENST00000293968 AHNAKQ09666 5890 aaKnown RBP1.82□□□□□ -2.12
CCNF-201ENST00000293968 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 79.3 ms