RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 KRTAP4-3Q9BYR4 195 aa6.72□□□□□ -1.33
VPS53-201ENST00000291074 KRTAP2-3P0C7H8 128 aa6.66□□□□□ -1.34
VPS53-201ENST00000291074 KRTAP2-4Q9BYR9 128 aa6.66□□□□□ -1.34
VPS53-201ENST00000291074 KRTAP2-1Q9BYU5 128 aa6.66□□□□□ -1.34
VPS53-201ENST00000291074 LOC100996750A0A140TA64 210 aa6.63□□□□□ -1.35
VPS53-201ENST00000291074 KRTAP19-3Q7Z4W3 81 aa6.63□□□□□ -1.35
VPS53-201ENST00000291074 MT1MQ8N339 61 aa6.61□□□□□ -1.35
VPS53-201ENST00000291074 MT1GP13640 62 aa6.57□□□□□ -1.36
VPS53-201ENST00000291074 SPRR2FQ96RM1 72 aa6.53□□□□□ -1.36
VPS53-201ENST00000291074 MACF1Q9UPN3 7388 aaKnown RBP6.52□□□□□ -1.37
VPS53-201ENST00000291074 CRCT1Q9UGL9 99 aa6.45□□□□□ -1.38
VPS53-201ENST00000291074 LCE5AQ5TCM9 118 aa6.43□□□□□ -1.38
VPS53-201ENST00000291074 DSTQ03001 7570 aaKnown RBP6.41□□□□□ -1.38
VPS53-201ENST00000291074 KRTAP9-2Q9BYQ4 174 aa6.37□□□□□ -1.39
VPS53-201ENST00000291074 SYNE2Q8WXH0 6885 aaKnown RBP6.33□□□□□ -1.4
VPS53-201ENST00000291074 MDN1Q9NU22 5596 aa6.21□□□□□ -1.42
VPS53-201ENST00000291074 KRTAP5-9P26371 169 aa6.18□□□□□ -1.42
VPS53-201ENST00000291074 LCE1AQ5T7P2 110 aa6.11□□□□□ -1.43
VPS53-201ENST00000291074 LCE3BQ5TA77 95 aa6.02□□□□□ -1.44
VPS53-201ENST00000291074 SPRR2EP22531 72 aa5.99□□□□□ -1.45
VPS53-201ENST00000291074 SPRR2BP35325 72 aa5.99□□□□□ -1.45
VPS53-201ENST00000291074 SPRR2AP35326 72 aa5.99□□□□□ -1.45
VPS53-201ENST00000291074 KRTAP6-1Q3LI64 71 aa5.98□□□□□ -1.45
VPS53-201ENST00000291074 SYNE1Q8NF91 8797 aaKnown RBP5.9□□□□□ -1.46
VPS53-201ENST00000291074 KRTAP4-9Q9BYQ8 210 aa5.89□□□□□ -1.47
VPS53-201ENST00000291074 MT1AP04731 61 aa5.89□□□□□ -1.47
VPS53-201ENST00000291074 KRTAP12-4P60329 112 aa5.86□□□□□ -1.47
VPS53-201ENST00000291074 KRTAP5-5Q701N2 237 aaPredicted RBP5.86□□□□□ -1.47
VPS53-201ENST00000291074 KRTAP6-3Q3LI67 103 aa5.78□□□□□ -1.48
VPS53-201ENST00000291074 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.75□□□□□ -1.49
VPS53-201ENST00000291074 SPRR2DP22532 72 aa5.73□□□□□ -1.49
VPS53-201ENST00000291074 KRTAP9-6A0A140TA67 174 aa5.61□□□□□ -1.51
VPS53-201ENST00000291074 LCE3DQ9BYE3 92 aa5.57□□□□□ -1.52
VPS53-201ENST00000291074 KRTAP9-4Q9BYQ2 154 aa5.55□□□□□ -1.52
VPS53-201ENST00000291074 LCE3EQ5T5B0 92 aa5.47□□□□□ -1.53
VPS53-201ENST00000291074 KRTAP6-2Q3LI66 62 aa5.39□□□□□ -1.55
VPS53-201ENST00000291074 KRTAP9-7A8MTY7 169 aa5.35□□□□□ -1.55
VPS53-201ENST00000291074 NEBP20929 6669 aa5.34□□□□□ -1.56
VPS53-201ENST00000291074 OBSCNQ5VST9 7968 aa5.31□□□□□ -1.56
VPS53-201ENST00000291074 KRTAP5-4Q6L8H1 288 aa5.3□□□□□ -1.56
VPS53-201ENST00000291074 MT3P25713 68 aa5.28□□□□□ -1.56
VPS53-201ENST00000291074 PRM1P04553 51 aa5.27□□□□□ -1.57
VPS53-201ENST00000291074 KRTAP4-6Q9BYQ5 205 aa5.11□□□□□ -1.59
VPS53-201ENST00000291074 MT4P47944 62 aa5.08□□□□□ -1.6
VPS53-201ENST00000291074 LCE4AQ5TA78 99 aa5.02□□□□□ -1.61
VPS53-201ENST00000291074 KRTAP20-2Q3LI61 65 aa4.95□□□□□ -1.62
VPS53-201ENST00000291074 KRTAP5-2Q701N4 177 aa4.91□□□□□ -1.62
VPS53-201ENST00000291074 HMCN1Q96RW7 5635 aa4.86□□□□□ -1.63
VPS53-201ENST00000291074 KRTAP2-2Q9BYT5 123 aa4.86□□□□□ -1.63
VPS53-201ENST00000291074 LCE1DQ5T752 114 aa4.81□□□□□ -1.64
VPS53-201ENST00000291074 KRTAP20-1Q3LI63 56 aa4.76□□□□□ -1.65
VPS53-201ENST00000291074 KRTAP5-3Q6L8H2 238 aa4.74□□□□□ -1.65
VPS53-201ENST00000291074 MUC5ACP98088 5654 aa4.48□□□□□ -1.69
VPS53-201ENST00000291074 LCE1EQ5T753 118 aa4.42□□□□□ -1.7
VPS53-201ENST00000291074 LCE1BQ5T7P3 118 aa4.34□□□□□ -1.71
VPS53-201ENST00000291074 KRTAP5-10Q6L8G5 202 aa4.2□□□□□ -1.74
VPS53-201ENST00000291074 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
VPS53-201ENST00000291074 KRTAP5-1Q6L8H4 278 aa4.18□□□□□ -1.74
VPS53-201ENST00000291074 LCE1CQ5T751 118 aa4.15□□□□□ -1.75
VPS53-201ENST00000291074 KRTAP4-11Q9BYQ6 195 aa4.13□□□□□ -1.75
VPS53-201ENST00000291074 KRTAP5-8O75690 187 aa3.98□□□□□ -1.77
VPS53-201ENST00000291074 KRTAP5-7Q6L8G8 165 aa3.96□□□□□ -1.78
VPS53-201ENST00000291074 AHNAK2Q8IVF2 5795 aa3.96□□□□□ -1.78
VPS53-201ENST00000291074 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.94□□□□□ -1.78
VPS53-201ENST00000291074 KRTAP21-2Q3LI59 83 aa3.86□□□□□ -1.79
VPS53-201ENST00000291074 KRTAP5-11Q6L8G4 156 aa3.6□□□□□ -1.83
VPS53-201ENST00000291074 KRTAP4-4Q9BYR3 166 aa3.57□□□□□ -1.84
VPS53-201ENST00000291074 MUC5BQ9HC84 5762 aaPredicted RBP3.55□□□□□ -1.84
VPS53-201ENST00000291074 MUC19Q7Z5P9 8384 aa3.53□□□□□ -1.85
VPS53-201ENST00000291074 KRTAP4-12Q9BQ66 201 aa3.47□□□□□ -1.85
VPS53-201ENST00000291074 KRTAP9-9Q9BYP9 154 aa3.41□□□□□ -1.86
VPS53-201ENST00000291074 LCE1FQ5T754 118 aa3.4□□□□□ -1.86
VPS53-201ENST00000291074 GPR98Q8WXG9 6306 aa3.37□□□□□ -1.87
VPS53-201ENST00000291074 KRTAP21-1Q3LI58 79 aa3.26□□□□□ -1.89
VPS53-201ENST00000291074 PHGR1C9JFL3 82 aa3.1□□□□□ -1.91
VPS53-201ENST00000291074 AHNAKQ09666 5890 aaKnown RBP2.77□□□□□ -1.97
VPS53-201ENST00000291074 MUC16Q8WXI7 14507 aa2.07□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 181.3 ms