RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 MACF1Q9UPN3 7388 aaKnown RBP5.33□□□□□ -1.56
SF3B4-201ENST00000271628 KRTAP4-7Q9BYR0 210 aa5.25□□□□□ -1.57
SF3B4-201ENST00000271628 MUC12Q9UKN1 5478 aa5.25□□□□□ -1.57
SF3B4-201ENST00000271628 KRTAP19-3Q7Z4W3 81 aa5.24□□□□□ -1.57
SF3B4-201ENST00000271628 SPRR2FQ96RM1 72 aa5.24□□□□□ -1.57
SF3B4-201ENST00000271628 MT1GP13640 62 aa5.24□□□□□ -1.57
SF3B4-201ENST00000271628 KRTAP9-6A8MVA2 160 aa5.19□□□□□ -1.58
SF3B4-201ENST00000271628 SYNE2Q8WXH0 6885 aaKnown RBP5.17□□□□□ -1.58
SF3B4-201ENST00000271628 MT1MQ8N339 61 aa5.14□□□□□ -1.59
SF3B4-201ENST00000271628 LCE5AQ5TCM9 118 aa5.12□□□□□ -1.59
SF3B4-201ENST00000271628 KRTAP5-9P26371 169 aa5.11□□□□□ -1.59
SF3B4-201ENST00000271628 KRTAP2-3P0C7H8 128 aa5.07□□□□□ -1.6
SF3B4-201ENST00000271628 KRTAP2-4Q9BYR9 128 aa5.07□□□□□ -1.6
SF3B4-201ENST00000271628 KRTAP2-1Q9BYU5 128 aa5.07□□□□□ -1.6
SF3B4-201ENST00000271628 KRTAP4-3Q9BYR4 195 aa5.03□□□□□ -1.6
SF3B4-201ENST00000271628 MDN1Q9NU22 5596 aa5.01□□□□□ -1.61
SF3B4-201ENST00000271628 LCE1AQ5T7P2 110 aa4.97□□□□□ -1.61
SF3B4-201ENST00000271628 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.95□□□□□ -1.62
SF3B4-201ENST00000271628 DSTQ03001 7570 aaKnown RBP4.93□□□□□ -1.62
SF3B4-201ENST00000271628 LOC100996750A0A140TA64 210 aa4.92□□□□□ -1.62
SF3B4-201ENST00000271628 KRTAP6-3Q3LI67 103 aa4.92□□□□□ -1.62
SF3B4-201ENST00000271628 SPRR2EP22531 72 aa4.91□□□□□ -1.62
SF3B4-201ENST00000271628 SPRR2BP35325 72 aa4.91□□□□□ -1.62
SF3B4-201ENST00000271628 SPRR2AP35326 72 aa4.91□□□□□ -1.62
SF3B4-201ENST00000271628 SPRR2DP22532 72 aa4.73□□□□□ -1.65
SF3B4-201ENST00000271628 KRTAP9-7A8MTY7 169 aa4.71□□□□□ -1.66
SF3B4-201ENST00000271628 KRTAP5-5Q701N2 237 aaPredicted RBP4.62□□□□□ -1.67
SF3B4-201ENST00000271628 MT1AP04731 61 aa4.59□□□□□ -1.67
SF3B4-201ENST00000271628 NEBP20929 6669 aa4.54□□□□□ -1.68
SF3B4-201ENST00000271628 KRTAP6-1Q3LI64 71 aa4.54□□□□□ -1.68
SF3B4-201ENST00000271628 LCE3BQ5TA77 95 aa4.52□□□□□ -1.69
SF3B4-201ENST00000271628 KRTAP12-4P60329 112 aa4.45□□□□□ -1.7
SF3B4-201ENST00000271628 SYNE1Q8NF91 8797 aaKnown RBP4.41□□□□□ -1.7
SF3B4-201ENST00000271628 KRTAP9-4Q9BYQ2 154 aa4.36□□□□□ -1.71
SF3B4-201ENST00000271628 KRTAP5-4Q6L8H1 288 aa4.31□□□□□ -1.72
SF3B4-201ENST00000271628 KRTAP4-9Q9BYQ8 210 aa4.24□□□□□ -1.73
SF3B4-201ENST00000271628 LCE4AQ5TA78 99 aa4.21□□□□□ -1.74
SF3B4-201ENST00000271628 LCE3DQ9BYE3 92 aa4.2□□□□□ -1.74
SF3B4-201ENST00000271628 KRTAP2-2Q9BYT5 123 aa4.2□□□□□ -1.74
SF3B4-201ENST00000271628 MT3P25713 68 aa4.18□□□□□ -1.74
SF3B4-201ENST00000271628 KRTAP6-2Q3LI66 62 aa4.15□□□□□ -1.74
SF3B4-201ENST00000271628 LCE3EQ5T5B0 92 aa4.15□□□□□ -1.74
SF3B4-201ENST00000271628 KRTAP20-1Q3LI63 56 aa4.11□□□□□ -1.75
SF3B4-201ENST00000271628 MT4P47944 62 aa4.09□□□□□ -1.76
SF3B4-201ENST00000271628 KRTAP4-6Q9BYQ5 205 aa4.08□□□□□ -1.76
SF3B4-201ENST00000271628 KRTAP20-2Q3LI61 65 aa4.02□□□□□ -1.77
SF3B4-201ENST00000271628 HMCN1Q96RW7 5635 aa3.98□□□□□ -1.77
SF3B4-201ENST00000271628 LCE1DQ5T752 114 aa3.98□□□□□ -1.77
SF3B4-201ENST00000271628 KRTAP5-2Q701N4 177 aa3.94□□□□□ -1.78
SF3B4-201ENST00000271628 PRM1P04553 51 aa3.91□□□□□ -1.78
SF3B4-201ENST00000271628 OBSCNQ5VST9 7968 aa3.9□□□□□ -1.78
SF3B4-201ENST00000271628 GPR98Q8WXG9 6306 aa3.88□□□□□ -1.79
SF3B4-201ENST00000271628 KRTAP5-3Q6L8H2 238 aa3.86□□□□□ -1.79
SF3B4-201ENST00000271628 LCE1EQ5T753 118 aa3.58□□□□□ -1.84
SF3B4-201ENST00000271628 KRTAP4-11Q9BYQ6 195 aa3.45□□□□□ -1.86
SF3B4-201ENST00000271628 KRTAP4-12Q9BQ66 201 aa3.44□□□□□ -1.86
SF3B4-201ENST00000271628 KRTAP5-1Q6L8H4 278 aa3.39□□□□□ -1.87
SF3B4-201ENST00000271628 MUC5ACP98088 5654 aa3.38□□□□□ -1.87
SF3B4-201ENST00000271628 AHNAK2Q8IVF2 5795 aa3.37□□□□□ -1.87
SF3B4-201ENST00000271628 KRTAP5-10Q6L8G5 202 aa3.35□□□□□ -1.87
SF3B4-201ENST00000271628 LCE1CQ5T751 118 aa3.34□□□□□ -1.87
SF3B4-201ENST00000271628 LCE1BQ5T7P3 118 aa3.34□□□□□ -1.87
SF3B4-201ENST00000271628 KRTAP5-8O75690 187 aa3.3□□□□□ -1.88
SF3B4-201ENST00000271628 KRTAP4-2Q9BYR5 136 aa3.29□□□□□ -1.88
SF3B4-201ENST00000271628 KRTAP5-7Q6L8G8 165 aa3.24□□□□□ -1.89
SF3B4-201ENST00000271628 KRTAP9-9Q9BYP9 154 aa3.24□□□□□ -1.89
SF3B4-201ENST00000271628 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.13□□□□□ -1.91
SF3B4-201ENST00000271628 LCE1FQ5T754 118 aa3.05□□□□□ -1.92
SF3B4-201ENST00000271628 AHNAKQ09666 5890 aaKnown RBP3.01□□□□□ -1.93
SF3B4-201ENST00000271628 KRTAP21-2Q3LI59 83 aa2.97□□□□□ -1.93
SF3B4-201ENST00000271628 MUC5BQ9HC84 5762 aaPredicted RBP2.92□□□□□ -1.94
SF3B4-201ENST00000271628 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
SF3B4-201ENST00000271628 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
SF3B4-201ENST00000271628 KRTAP21-1Q3LI58 79 aa2.5□□□□□ -2.01
SF3B4-201ENST00000271628 PHGR1C9JFL3 82 aa2.49□□□□□ -2.01
SF3B4-201ENST00000271628 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
SF3B4-201ENST00000271628 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 193.8 ms