RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 KRTAP19-6Q3LI70 58 aa2.78□□□□□ -1.96
USP3-201ENST00000268049 KRTAP6-3Q3LI67 103 aa2.78□□□□□ -1.97
USP3-201ENST00000268049 FSIP2Q5CZC0 6907 aa2.76□□□□□ -1.97
USP3-201ENST00000268049 KRTAP4-8A0A0G2JLE6 195 aa2.72□□□□□ -1.97
USP3-201ENST00000268049 MT4P47944 62 aa2.72□□□□□ -1.97
USP3-201ENST00000268049 KRTAP4-8Q9BYQ9 185 aa2.72□□□□□ -1.97
USP3-201ENST00000268049 KRTAP19-3Q7Z4W3 81 aa2.71□□□□□ -1.98
USP3-201ENST00000268049 MUC2Q02817 5179 aa2.69□□□□□ -1.98
USP3-201ENST00000268049 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.67□□□□□ -1.98
USP3-201ENST00000268049 KRTAP2-2Q9BYT5 123 aa2.66□□□□□ -1.98
USP3-201ENST00000268049 KRTAP2-1Q9BYU5 128 aa2.66□□□□□ -1.98
USP3-201ENST00000268049 MT3P25713 68 aa2.61□□□□□ -1.99
USP3-201ENST00000268049 LCE1AQ5T7P2 110 aa2.61□□□□□ -1.99
USP3-201ENST00000268049 LCE4AQ5TA78 99 aa2.6□□□□□ -1.99
USP3-201ENST00000268049 LCE3DQ9BYE3 92 aa2.58□□□□□ -2
USP3-201ENST00000268049 LCE3EQ5T5B0 92 aa2.56□□□□□ -2
USP3-201ENST00000268049 MT1EP04732 61 aa2.55□□□□□ -2
USP3-201ENST00000268049 MT1LQ93083 61 aa2.52□□□□□ -2.01
USP3-201ENST00000268049 MT1MQ8N339 61 aa2.48□□□□□ -2.01
USP3-201ENST00000268049 PRM1P04553 51 aa2.47□□□□□ -2.01
USP3-201ENST00000268049 LCE1BQ5T7P3 118 aa2.47□□□□□ -2.01
USP3-201ENST00000268049 LCE1DQ5T752 114 aa2.46□□□□□ -2.02
USP3-201ENST00000268049 USH2AO75445 5202 aa2.45□□□□□ -2.02
USP3-201ENST00000268049 LCE5AQ5TCM9 118 aa2.45□□□□□ -2.02
USP3-201ENST00000268049 SYNE2Q8WXH0 6885 aaKnown RBP2.44□□□□□ -2.02
USP3-201ENST00000268049 KRTAP4-7Q9BYR0 210 aa2.43□□□□□ -2.02
USP3-201ENST00000268049 KRTAP19-7Q3SYF9 63 aa2.42□□□□□ -2.02
USP3-201ENST00000268049 KRTAP9-9Q9BYP9 154 aa2.36□□□□□ -2.03
USP3-201ENST00000268049 KRTAP4-3Q9BYR4 195 aa2.36□□□□□ -2.03
USP3-201ENST00000268049 MT1AP04731 61 aa2.35□□□□□ -2.03
USP3-201ENST00000268049 KRTAP4-9Q9BYQ8 210 aa2.32□□□□□ -2.04
USP3-201ENST00000268049 FCGBPQ9Y6R7 5405 aaPredicted RBP2.32□□□□□ -2.04
USP3-201ENST00000268049 MACF1Q9UPN3 7388 aaKnown RBP2.3□□□□□ -2.04
USP3-201ENST00000268049 SSPOA2VEC9 5147 aa2.3□□□□□ -2.04
USP3-201ENST00000268049 LOC100996750A0A140TA64 210 aa2.29□□□□□ -2.04
USP3-201ENST00000268049 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
USP3-201ENST00000268049 LCE1EQ5T753 118 aa2.28□□□□□ -2.04
USP3-201ENST00000268049 LCE1FQ5T754 118 aa2.28□□□□□ -2.04
USP3-201ENST00000268049 KRTAP5-9P26371 169 aa2.27□□□□□ -2.05
USP3-201ENST00000268049 SYNE1Q8NF91 8797 aaKnown RBP2.25□□□□□ -2.05
USP3-201ENST00000268049 NEBP20929 6669 aa2.22□□□□□ -2.05
USP3-201ENST00000268049 KMT2DO14686 5537 aa2.18□□□□□ -2.06
USP3-201ENST00000268049 KRTAP9-4Q9BYQ2 154 aa2.16□□□□□ -2.06
USP3-201ENST00000268049 GPR98Q8WXG9 6306 aa2.13□□□□□ -2.07
USP3-201ENST00000268049 KRTAP6-1Q3LI64 71 aa2.1□□□□□ -2.07
USP3-201ENST00000268049 KRTAP6-2Q3LI66 62 aa2.1□□□□□ -2.07
USP3-201ENST00000268049 MUC12Q9UKN1 5478 aa2.09□□□□□ -2.07
USP3-201ENST00000268049 DSTQ03001 7570 aaKnown RBP2.09□□□□□ -2.08
USP3-201ENST00000268049 KRTAP9-6A8MVA2 160 aa2.05□□□□□ -2.08
USP3-201ENST00000268049 MDN1Q9NU22 5596 aa2.05□□□□□ -2.08
USP3-201ENST00000268049 OBSCNQ5VST9 7968 aa2.02□□□□□ -2.09
USP3-201ENST00000268049 KRTAP4-6Q9BYQ5 205 aa1.97□□□□□ -2.09
USP3-201ENST00000268049 KRTAP20-2Q3LI61 65 aa1.94□□□□□ -2.1
USP3-201ENST00000268049 KRTAP5-4Q6L8H1 288 aa1.94□□□□□ -2.1
USP3-201ENST00000268049 KRTAP4-11Q9BYQ6 195 aa1.82□□□□□ -2.12
USP3-201ENST00000268049 KRTAP5-5Q701N2 237 aaPredicted RBP1.8□□□□□ -2.12
USP3-201ENST00000268049 MUC19Q7Z5P9 8384 aa1.78□□□□□ -2.12
USP3-201ENST00000268049 KRTAP5-3Q6L8H2 238 aa1.76□□□□□ -2.13
USP3-201ENST00000268049 AHNAK2Q8IVF2 5795 aa1.76□□□□□ -2.13
USP3-201ENST00000268049 HMCN1Q96RW7 5635 aa1.72□□□□□ -2.13
USP3-201ENST00000268049 KRTAP4-12Q9BQ66 201 aa1.68□□□□□ -2.14
USP3-201ENST00000268049 KRTAP4-2Q9BYR5 136 aa1.66□□□□□ -2.14
USP3-201ENST00000268049 MUC5ACP98088 5654 aa1.61□□□□□ -2.15
USP3-201ENST00000268049 PHGR1C9JFL3 82 aa1.57□□□□□ -2.16
USP3-201ENST00000268049 KRTAP5-2Q701N4 177 aa1.56□□□□□ -2.16
USP3-201ENST00000268049 KRTAP5-8O75690 187 aa1.56□□□□□ -2.16
USP3-201ENST00000268049 KRTAP4-4Q9BYR3 166 aa1.5□□□□□ -2.17
USP3-201ENST00000268049 AHNAKQ09666 5890 aaKnown RBP1.46□□□□□ -2.18
USP3-201ENST00000268049 KRTAP5-10Q6L8G5 202 aa1.46□□□□□ -2.18
USP3-201ENST00000268049 KRTAP5-7Q6L8G8 165 aa1.43□□□□□ -2.18
USP3-201ENST00000268049 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.41□□□□□ -2.18
USP3-201ENST00000268049 MUC5BQ9HC84 5762 aaPredicted RBP1.41□□□□□ -2.18
USP3-201ENST00000268049 KRTAP5-1Q6L8H4 278 aa1.38□□□□□ -2.19
USP3-201ENST00000268049 KRTAP5-11Q6L8G4 156 aa1.29□□□□□ -2.2
USP3-201ENST00000268049 KRTAP21-1Q3LI58 79 aa1.23□□□□□ -2.21
USP3-201ENST00000268049 KRTAP21-2Q3LI59 83 aa1.18□□□□□ -2.22
USP3-201ENST00000268049 MUC16Q8WXI7 14507 aa0.79□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 215.1 ms