RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 KRTAP9-2Q9BYQ4 174 aa5.04□□□□□ -1.6
DDX56-201ENST00000258772 FSIP2Q5CZC0 6907 aa5.03□□□□□ -1.6
DDX56-201ENST00000258772 KRTAP4-3Q9BYR4 195 aa4.98□□□□□ -1.61
DDX56-201ENST00000258772 LOC100996750A0A140TA64 210 aa4.96□□□□□ -1.61
DDX56-201ENST00000258772 FCGBPQ9Y6R7 5405 aaPredicted RBP4.95□□□□□ -1.62
DDX56-201ENST00000258772 KRTAP19-3Q7Z4W3 81 aa4.93□□□□□ -1.62
DDX56-201ENST00000258772 MT1GP13640 62 aa4.92□□□□□ -1.62
DDX56-201ENST00000258772 MT1MQ8N339 61 aa4.92□□□□□ -1.62
DDX56-201ENST00000258772 MUC12Q9UKN1 5478 aa4.88□□□□□ -1.63
DDX56-201ENST00000258772 KRTAP2-2Q9BYT5 123 aa4.87□□□□□ -1.63
DDX56-201ENST00000258772 CRCT1Q9UGL9 99 aa4.83□□□□□ -1.64
DDX56-201ENST00000258772 LCE5AQ5TCM9 118 aa4.77□□□□□ -1.65
DDX56-201ENST00000258772 KRTAP9-6A0A140TA67 174 aa4.73□□□□□ -1.65
DDX56-201ENST00000258772 SPRR2FQ96RM1 72 aa4.73□□□□□ -1.65
DDX56-201ENST00000258772 DSTQ03001 7570 aaKnown RBP4.68□□□□□ -1.66
DDX56-201ENST00000258772 KRTAP12-4P60329 112 aa4.61□□□□□ -1.67
DDX56-201ENST00000258772 MACF1Q9UPN3 7388 aaKnown RBP4.56□□□□□ -1.68
DDX56-201ENST00000258772 LCE3BQ5TA77 95 aa4.54□□□□□ -1.68
DDX56-201ENST00000258772 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.48□□□□□ -1.69
DDX56-201ENST00000258772 KRTAP6-1Q3LI64 71 aa4.47□□□□□ -1.69
DDX56-201ENST00000258772 SYNE2Q8WXH0 6885 aaKnown RBP4.46□□□□□ -1.7
DDX56-201ENST00000258772 KRTAP4-9Q9BYQ8 210 aa4.45□□□□□ -1.7
DDX56-201ENST00000258772 MT1AP04731 61 aa4.45□□□□□ -1.7
DDX56-201ENST00000258772 LCE1AQ5T7P2 110 aa4.43□□□□□ -1.7
DDX56-201ENST00000258772 SYNE1Q8NF91 8797 aaKnown RBP4.42□□□□□ -1.7
DDX56-201ENST00000258772 MDN1Q9NU22 5596 aa4.41□□□□□ -1.7
DDX56-201ENST00000258772 KRTAP5-9P26371 169 aa4.39□□□□□ -1.71
DDX56-201ENST00000258772 LCE1FQ5T754 118 aa4.37□□□□□ -1.71
DDX56-201ENST00000258772 KRTAP6-3Q3LI67 103 aa4.36□□□□□ -1.71
DDX56-201ENST00000258772 KRTAP5-5Q701N2 237 aaPredicted RBP4.36□□□□□ -1.71
DDX56-201ENST00000258772 LCE1EQ5T753 118 aa4.32□□□□□ -1.72
DDX56-201ENST00000258772 LCE3DQ9BYE3 92 aa4.31□□□□□ -1.72
DDX56-201ENST00000258772 KRTAP9-7A8MTY7 169 aa4.3□□□□□ -1.72
DDX56-201ENST00000258772 SPRR2EP22531 72 aa4.28□□□□□ -1.72
DDX56-201ENST00000258772 SPRR2BP35325 72 aa4.28□□□□□ -1.72
DDX56-201ENST00000258772 SPRR2AP35326 72 aa4.28□□□□□ -1.72
DDX56-201ENST00000258772 LCE3EQ5T5B0 92 aa4.26□□□□□ -1.73
DDX56-201ENST00000258772 KRTAP9-4Q9BYQ2 154 aa4.18□□□□□ -1.74
DDX56-201ENST00000258772 LCE1DQ5T752 114 aa4.15□□□□□ -1.74
DDX56-201ENST00000258772 SPRR2DP22532 72 aa4.1□□□□□ -1.75
DDX56-201ENST00000258772 PRM1P04553 51 aa4.07□□□□□ -1.76
DDX56-201ENST00000258772 NEBP20929 6669 aa4.07□□□□□ -1.76
DDX56-201ENST00000258772 KRTAP6-2Q3LI66 62 aa4.01□□□□□ -1.77
DDX56-201ENST00000258772 MT3P25713 68 aa3.99□□□□□ -1.77
DDX56-201ENST00000258772 KRTAP9-9Q9BYP9 154 aa3.93□□□□□ -1.78
DDX56-201ENST00000258772 OBSCNQ5VST9 7968 aa3.9□□□□□ -1.78
DDX56-201ENST00000258772 KRTAP5-4Q6L8H1 288 aa3.82□□□□□ -1.8
DDX56-201ENST00000258772 KRTAP20-1Q3LI63 56 aa3.8□□□□□ -1.8
DDX56-201ENST00000258772 KRTAP4-6Q9BYQ5 205 aa3.67□□□□□ -1.82
DDX56-201ENST00000258772 MT4P47944 62 aa3.61□□□□□ -1.83
DDX56-201ENST00000258772 LCE4AQ5TA78 99 aa3.59□□□□□ -1.84
DDX56-201ENST00000258772 KRTAP20-2Q3LI61 65 aa3.58□□□□□ -1.84
DDX56-201ENST00000258772 KRTAP5-2Q701N4 177 aa3.58□□□□□ -1.84
DDX56-201ENST00000258772 KRTAP5-3Q6L8H2 238 aa3.42□□□□□ -1.86
DDX56-201ENST00000258772 HMCN1Q96RW7 5635 aa3.4□□□□□ -1.87
DDX56-201ENST00000258772 MUC5ACP98088 5654 aa3.34□□□□□ -1.88
DDX56-201ENST00000258772 LCE1BQ5T7P3 118 aa3.2□□□□□ -1.9
DDX56-201ENST00000258772 KRTAP5-10Q6L8G5 202 aa3.15□□□□□ -1.9
DDX56-201ENST00000258772 KRTAP5-1Q6L8H4 278 aa3.12□□□□□ -1.91
DDX56-201ENST00000258772 KRTAP4-2Q9BYR5 136 aa3.09□□□□□ -1.92
DDX56-201ENST00000258772 LCE1CQ5T751 118 aa3.08□□□□□ -1.92
DDX56-201ENST00000258772 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
DDX56-201ENST00000258772 AHNAK2Q8IVF2 5795 aa3.05□□□□□ -1.92
DDX56-201ENST00000258772 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
DDX56-201ENST00000258772 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.91□□□□□ -1.94
DDX56-201ENST00000258772 KRTAP4-12Q9BQ66 201 aa2.91□□□□□ -1.94
DDX56-201ENST00000258772 KRTAP21-2Q3LI59 83 aa2.9□□□□□ -1.95
DDX56-201ENST00000258772 KRTAP5-8O75690 187 aa2.82□□□□□ -1.96
DDX56-201ENST00000258772 KRTAP5-7Q6L8G8 165 aa2.79□□□□□ -1.96
DDX56-201ENST00000258772 MUC19Q7Z5P9 8384 aa2.75□□□□□ -1.97
DDX56-201ENST00000258772 KRTAP5-11Q6L8G4 156 aa2.63□□□□□ -1.99
DDX56-201ENST00000258772 KRTAP4-4Q9BYR3 166 aa2.63□□□□□ -1.99
DDX56-201ENST00000258772 KRTAP21-1Q3LI58 79 aa2.57□□□□□ -2
DDX56-201ENST00000258772 MUC5BQ9HC84 5762 aaPredicted RBP2.49□□□□□ -2.01
DDX56-201ENST00000258772 AHNAKQ09666 5890 aaKnown RBP2.37□□□□□ -2.03
DDX56-201ENST00000258772 PHGR1C9JFL3 82 aa2.28□□□□□ -2.05
DDX56-201ENST00000258772 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 95.1 ms