RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 MT1GP13640 62 aa7.9□□□□□ -1.14
MSX2-201ENST00000239243 KRTAP9-6A8MVA2 160 aa7.89□□□□□ -1.15
MSX2-201ENST00000239243 SPRR2FQ96RM1 72 aa7.88□□□□□ -1.15
MSX2-201ENST00000239243 MACF1Q9UPN3 7388 aaKnown RBP7.83□□□□□ -1.16
MSX2-201ENST00000239243 MT1MQ8N339 61 aa7.81□□□□□ -1.16
MSX2-201ENST00000239243 MUC12Q9UKN1 5478 aa7.75□□□□□ -1.17
MSX2-201ENST00000239243 LCE5AQ5TCM9 118 aa7.73□□□□□ -1.17
MSX2-201ENST00000239243 KRTAP5-9P26371 169 aa7.66□□□□□ -1.18
MSX2-201ENST00000239243 KRTAP4-3Q9BYR4 195 aa7.66□□□□□ -1.18
MSX2-201ENST00000239243 SYNE2Q8WXH0 6885 aaKnown RBP7.52□□□□□ -1.21
MSX2-201ENST00000239243 KRTAP2-3P0C7H8 128 aa7.5□□□□□ -1.21
MSX2-201ENST00000239243 KRTAP2-4Q9BYR9 128 aa7.5□□□□□ -1.21
MSX2-201ENST00000239243 KRTAP2-1Q9BYU5 128 aa7.5□□□□□ -1.21
MSX2-201ENST00000239243 LOC100996750A0A140TA64 210 aa7.49□□□□□ -1.21
MSX2-201ENST00000239243 LCE1AQ5T7P2 110 aa7.47□□□□□ -1.21
MSX2-201ENST00000239243 SPRR2EP22531 72 aa7.37□□□□□ -1.23
MSX2-201ENST00000239243 SPRR2BP35325 72 aa7.37□□□□□ -1.23
MSX2-201ENST00000239243 SPRR2AP35326 72 aa7.37□□□□□ -1.23
MSX2-201ENST00000239243 KRTAP9-6A0A140TA67 174 aa7.36□□□□□ -1.23
MSX2-201ENST00000239243 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.35□□□□□ -1.23
MSX2-201ENST00000239243 KRTAP6-3Q3LI67 103 aa7.33□□□□□ -1.24
MSX2-201ENST00000239243 INE1O15225 51 aa7.32□□□□□ -1.24
MSX2-201ENST00000239243 MDN1Q9NU22 5596 aa7.3□□□□□ -1.24
MSX2-201ENST00000239243 DSTQ03001 7570 aaKnown RBP7.24□□□□□ -1.25
MSX2-201ENST00000239243 SPRR2DP22532 72 aa7.09□□□□□ -1.27
MSX2-201ENST00000239243 KRTAP5-5Q701N2 237 aaPredicted RBP6.99□□□□□ -1.29
MSX2-201ENST00000239243 MT1AP04731 61 aa6.99□□□□□ -1.29
MSX2-201ENST00000239243 KRTAP6-1Q3LI64 71 aa6.91□□□□□ -1.3
MSX2-201ENST00000239243 LCE3BQ5TA77 95 aa6.82□□□□□ -1.32
MSX2-201ENST00000239243 KRTAP9-7A8MTY7 169 aa6.81□□□□□ -1.32
MSX2-201ENST00000239243 NEBP20929 6669 aa6.68□□□□□ -1.34
MSX2-201ENST00000239243 KRTAP9-4Q9BYQ2 154 aa6.6□□□□□ -1.35
MSX2-201ENST00000239243 SYNE1Q8NF91 8797 aaKnown RBP6.59□□□□□ -1.35
MSX2-201ENST00000239243 KRTAP5-4Q6L8H1 288 aa6.48□□□□□ -1.37
MSX2-201ENST00000239243 KRTAP4-9Q9BYQ8 210 aa6.48□□□□□ -1.37
MSX2-201ENST00000239243 KRTAP12-4P60329 112 aa6.46□□□□□ -1.38
MSX2-201ENST00000239243 LCE3DQ9BYE3 92 aa6.36□□□□□ -1.39
MSX2-201ENST00000239243 MT3P25713 68 aa6.33□□□□□ -1.4
MSX2-201ENST00000239243 KRTAP6-2Q3LI66 62 aa6.3□□□□□ -1.4
MSX2-201ENST00000239243 LCE4AQ5TA78 99 aa6.3□□□□□ -1.4
MSX2-201ENST00000239243 LCE3EQ5T5B0 92 aa6.23□□□□□ -1.41
MSX2-201ENST00000239243 KRTAP2-2Q9BYT5 123 aa6.23□□□□□ -1.41
MSX2-201ENST00000239243 MT4P47944 62 aa6.14□□□□□ -1.43
MSX2-201ENST00000239243 KRTAP4-6Q9BYQ5 205 aa6.13□□□□□ -1.43
MSX2-201ENST00000239243 KRTAP20-1Q3LI63 56 aa6.09□□□□□ -1.44
MSX2-201ENST00000239243 KRTAP20-2Q3LI61 65 aa6.06□□□□□ -1.44
MSX2-201ENST00000239243 LCE1DQ5T752 114 aa5.95□□□□□ -1.46
MSX2-201ENST00000239243 KRTAP5-2Q701N4 177 aa5.95□□□□□ -1.46
MSX2-201ENST00000239243 HMCN1Q96RW7 5635 aa5.86□□□□□ -1.47
MSX2-201ENST00000239243 KRTAP5-3Q6L8H2 238 aa5.8□□□□□ -1.48
MSX2-201ENST00000239243 OBSCNQ5VST9 7968 aa5.74□□□□□ -1.49
MSX2-201ENST00000239243 PRM1P04553 51 aa5.62□□□□□ -1.51
MSX2-201ENST00000239243 LCE1EQ5T753 118 aa5.39□□□□□ -1.55
MSX2-201ENST00000239243 KRTAP4-11Q9BYQ6 195 aa5.15□□□□□ -1.58
MSX2-201ENST00000239243 KRTAP5-1Q6L8H4 278 aa5.08□□□□□ -1.6
MSX2-201ENST00000239243 MUC5ACP98088 5654 aa5.08□□□□□ -1.6
MSX2-201ENST00000239243 LCE1BQ5T7P3 118 aa5.07□□□□□ -1.6
MSX2-201ENST00000239243 KRTAP5-10Q6L8G5 202 aa5.07□□□□□ -1.6
MSX2-201ENST00000239243 LCE1CQ5T751 118 aa5.03□□□□□ -1.6
MSX2-201ENST00000239243 KRTAP4-2Q9BYR5 136 aa4.99□□□□□ -1.61
MSX2-201ENST00000239243 AHNAK2Q8IVF2 5795 aa4.96□□□□□ -1.61
MSX2-201ENST00000239243 KRTAP5-8O75690 187 aa4.93□□□□□ -1.62
MSX2-201ENST00000239243 KRTAP5-7Q6L8G8 165 aa4.87□□□□□ -1.63
MSX2-201ENST00000239243 KRTAP9-9Q9BYP9 154 aa4.82□□□□□ -1.64
MSX2-201ENST00000239243 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.73□□□□□ -1.65
MSX2-201ENST00000239243 KRTAP4-12Q9BQ66 201 aa4.63□□□□□ -1.67
MSX2-201ENST00000239243 KRTAP21-2Q3LI59 83 aa4.51□□□□□ -1.69
MSX2-201ENST00000239243 KRTAP5-11Q6L8G4 156 aa4.4□□□□□ -1.71
MSX2-201ENST00000239243 GPR98Q8WXG9 6306 aa4.26□□□□□ -1.73
MSX2-201ENST00000239243 MUC5BQ9HC84 5762 aaPredicted RBP4.14□□□□□ -1.75
MSX2-201ENST00000239243 KRTAP4-4Q9BYR3 166 aa3.98□□□□□ -1.77
MSX2-201ENST00000239243 LCE1FQ5T754 118 aa3.97□□□□□ -1.77
MSX2-201ENST00000239243 PHGR1C9JFL3 82 aa3.76□□□□□ -1.81
MSX2-201ENST00000239243 AHNAKQ09666 5890 aaKnown RBP3.57□□□□□ -1.84
MSX2-201ENST00000239243 KRTAP21-1Q3LI58 79 aa3.5□□□□□ -1.85
MSX2-201ENST00000239243 MUC19Q7Z5P9 8384 aa3.38□□□□□ -1.87
MSX2-201ENST00000239243 MUC16Q8WXI7 14507 aa2.46□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms