RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 MT1LQ93083 61 aa4.13□□□□□ -1.75
MSH2-201ENST00000233146 SYNE2Q8WXH0 6885 aaKnown RBP4.11□□□□□ -1.75
MSH2-201ENST00000233146 KRTAP6-3Q3LI67 103 aa4.1□□□□□ -1.75
MSH2-201ENST00000233146 LCE1AQ5T7P2 110 aa4.08□□□□□ -1.76
MSH2-201ENST00000233146 MUC12Q9UKN1 5478 aa4.06□□□□□ -1.76
MSH2-201ENST00000233146 FCGBPQ9Y6R7 5405 aaPredicted RBP4.05□□□□□ -1.76
MSH2-201ENST00000233146 MACF1Q9UPN3 7388 aaKnown RBP4.04□□□□□ -1.76
MSH2-201ENST00000233146 LOC100996750A0A140TA64 210 aa4.02□□□□□ -1.77
MSH2-201ENST00000233146 KRTAP9-6A0A140TA67 174 aa4.01□□□□□ -1.77
MSH2-201ENST00000233146 MT1EP04732 61 aa4.01□□□□□ -1.77
MSH2-201ENST00000233146 KRTAP9-2Q9BYQ4 174 aa3.99□□□□□ -1.77
MSH2-201ENST00000233146 PRM1P04553 51 aa3.96□□□□□ -1.78
MSH2-201ENST00000233146 OBSCNQ5VST9 7968 aa3.95□□□□□ -1.78
MSH2-201ENST00000233146 KRTAP9-7A8MTY7 169 aa3.93□□□□□ -1.78
MSH2-201ENST00000233146 MT1GP13640 62 aa3.91□□□□□ -1.78
MSH2-201ENST00000233146 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
MSH2-201ENST00000233146 KRTAP5-5Q701N2 237 aaPredicted RBP3.91□□□□□ -1.78
MSH2-201ENST00000233146 KRTAP4-3Q9BYR4 195 aa3.88□□□□□ -1.79
MSH2-201ENST00000233146 KRTAP4-9Q9BYQ8 210 aa3.86□□□□□ -1.79
MSH2-201ENST00000233146 MT1AP04731 61 aa3.85□□□□□ -1.79
MSH2-201ENST00000233146 MDN1Q9NU22 5596 aa3.84□□□□□ -1.79
MSH2-201ENST00000233146 SYNE1Q8NF91 8797 aaKnown RBP3.8□□□□□ -1.8
MSH2-201ENST00000233146 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
MSH2-201ENST00000233146 CRCT1Q9UGL9 99 aa3.79□□□□□ -1.8
MSH2-201ENST00000233146 LCE3BQ5TA77 95 aa3.79□□□□□ -1.8
MSH2-201ENST00000233146 LCE3DQ9BYE3 92 aa3.78□□□□□ -1.8
MSH2-201ENST00000233146 LCE1DQ5T752 114 aa3.75□□□□□ -1.81
MSH2-201ENST00000233146 SPRR2FQ96RM1 72 aa3.71□□□□□ -1.82
MSH2-201ENST00000233146 MT1MQ8N339 61 aa3.7□□□□□ -1.82
MSH2-201ENST00000233146 LCE2DQ5TA82 110 aaPredicted RBP3.68□□□□□ -1.82
MSH2-201ENST00000233146 KRTAP19-6Q3LI70 58 aa3.67□□□□□ -1.82
MSH2-201ENST00000233146 KRTAP6-2Q3LI66 62 aa3.62□□□□□ -1.83
MSH2-201ENST00000233146 KRTAP19-3Q7Z4W3 81 aa3.59□□□□□ -1.83
MSH2-201ENST00000233146 KRTAP6-1Q3LI64 71 aa3.53□□□□□ -1.84
MSH2-201ENST00000233146 LCE1FQ5T754 118 aa3.5□□□□□ -1.85
MSH2-201ENST00000233146 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.48□□□□□ -1.85
MSH2-201ENST00000233146 SPRR2EP22531 72 aa3.44□□□□□ -1.86
MSH2-201ENST00000233146 SPRR2BP35325 72 aa3.44□□□□□ -1.86
MSH2-201ENST00000233146 SPRR2AP35326 72 aa3.44□□□□□ -1.86
MSH2-201ENST00000233146 LCE5AQ5TCM9 118 aa3.38□□□□□ -1.87
MSH2-201ENST00000233146 SPRR2DP22532 72 aa3.27□□□□□ -1.89
MSH2-201ENST00000233146 KRTAP9-4Q9BYQ2 154 aa3.18□□□□□ -1.9
MSH2-201ENST00000233146 NEBP20929 6669 aa3.17□□□□□ -1.9
MSH2-201ENST00000233146 KRTAP5-9P26371 169 aa3.14□□□□□ -1.91
MSH2-201ENST00000233146 MT4P47944 62 aa3.11□□□□□ -1.91
MSH2-201ENST00000233146 MT3P25713 68 aa3.03□□□□□ -1.93
MSH2-201ENST00000233146 KRTAP4-6Q9BYQ5 205 aa2.94□□□□□ -1.94
MSH2-201ENST00000233146 KRTAP4-11Q9BYQ6 195 aa2.92□□□□□ -1.94
MSH2-201ENST00000233146 HMCN1Q96RW7 5635 aa2.91□□□□□ -1.94
MSH2-201ENST00000233146 KRTAP20-1Q3LI63 56 aa2.9□□□□□ -1.94
MSH2-201ENST00000233146 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
MSH2-201ENST00000233146 MUC5ACP98088 5654 aa2.7□□□□□ -1.98
MSH2-201ENST00000233146 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
MSH2-201ENST00000233146 KRTAP5-4Q6L8H1 288 aa2.67□□□□□ -1.98
MSH2-201ENST00000233146 KRTAP20-2Q3LI61 65 aa2.63□□□□□ -1.99
MSH2-201ENST00000233146 KRTAP21-1Q3LI58 79 aa2.6□□□□□ -1.99
MSH2-201ENST00000233146 LCE1CQ5T751 118 aa2.59□□□□□ -1.99
MSH2-201ENST00000233146 LCE1BQ5T7P3 118 aa2.59□□□□□ -1.99
MSH2-201ENST00000233146 KRTAP9-9Q9BYP9 154 aa2.57□□□□□ -2
MSH2-201ENST00000233146 KRTAP5-1Q6L8H4 278 aa2.56□□□□□ -2
MSH2-201ENST00000233146 LCE4AQ5TA78 99 aa2.55□□□□□ -2
MSH2-201ENST00000233146 AHNAK2Q8IVF2 5795 aa2.48□□□□□ -2.01
MSH2-201ENST00000233146 GPR98Q8WXG9 6306 aa2.47□□□□□ -2.01
MSH2-201ENST00000233146 KRTAP5-2Q701N4 177 aa2.47□□□□□ -2.01
MSH2-201ENST00000233146 MUC5BQ9HC84 5762 aaPredicted RBP2.43□□□□□ -2.02
MSH2-201ENST00000233146 KRTAP5-3Q6L8H2 238 aa2.4□□□□□ -2.03
MSH2-201ENST00000233146 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
MSH2-201ENST00000233146 KRTAP4-12Q9BQ66 201 aa2.25□□□□□ -2.05
MSH2-201ENST00000233146 KRTAP5-8O75690 187 aa2.21□□□□□ -2.06
MSH2-201ENST00000233146 KRTAP4-2Q9BYR5 136 aa2.21□□□□□ -2.06
MSH2-201ENST00000233146 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.13□□□□□ -2.07
MSH2-201ENST00000233146 KRTAP4-4Q9BYR3 166 aa2.13□□□□□ -2.07
MSH2-201ENST00000233146 KRTAP5-7Q6L8G8 165 aa1.97□□□□□ -2.09
MSH2-201ENST00000233146 AHNAKQ09666 5890 aaKnown RBP1.9□□□□□ -2.1
MSH2-201ENST00000233146 KRTAP5-11Q6L8G4 156 aa1.8□□□□□ -2.12
MSH2-201ENST00000233146 PHGR1C9JFL3 82 aa1.56□□□□□ -2.16
MSH2-201ENST00000233146 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 13 ms