RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 KRTAP4-3Q9BYR4 195 aa4.69□□□□□ -1.66
USH1C-201ENST00000005226 MUC12Q9UKN1 5478 aa4.64□□□□□ -1.67
USH1C-201ENST00000005226 FCGBPQ9Y6R7 5405 aaPredicted RBP4.62□□□□□ -1.67
USH1C-201ENST00000005226 MT1GP13640 62 aa4.59□□□□□ -1.67
USH1C-201ENST00000005226 CRCT1Q9UGL9 99 aa4.59□□□□□ -1.68
USH1C-201ENST00000005226 DSTQ03001 7570 aaKnown RBP4.55□□□□□ -1.68
USH1C-201ENST00000005226 KRTAP19-4Q3LI73 84 aa4.53□□□□□ -1.68
USH1C-201ENST00000005226 KRTAP19-6Q3LI70 58 aa4.49□□□□□ -1.69
USH1C-201ENST00000005226 MT1MQ8N339 61 aa4.45□□□□□ -1.7
USH1C-201ENST00000005226 KRTAP19-3Q7Z4W3 81 aa4.41□□□□□ -1.7
USH1C-201ENST00000005226 KRTAP12-4P60329 112 aa4.38□□□□□ -1.71
USH1C-201ENST00000005226 KRTAP4-9Q9BYQ8 210 aa4.3□□□□□ -1.72
USH1C-201ENST00000005226 SYNE1Q8NF91 8797 aaKnown RBP4.3□□□□□ -1.72
USH1C-201ENST00000005226 LCE3BQ5TA77 95 aa4.29□□□□□ -1.72
USH1C-201ENST00000005226 SPRR2FQ96RM1 72 aa4.26□□□□□ -1.73
USH1C-201ENST00000005226 LCE5AQ5TCM9 118 aa4.23□□□□□ -1.73
USH1C-201ENST00000005226 MACF1Q9UPN3 7388 aaKnown RBP4.22□□□□□ -1.73
USH1C-201ENST00000005226 SYNE2Q8WXH0 6885 aaKnown RBP4.16□□□□□ -1.74
USH1C-201ENST00000005226 KRTAP6-1Q3LI64 71 aa4.13□□□□□ -1.75
USH1C-201ENST00000005226 MDN1Q9NU22 5596 aa4.11□□□□□ -1.75
USH1C-201ENST00000005226 KRTAP9-2Q9BYQ4 174 aa4.03□□□□□ -1.76
USH1C-201ENST00000005226 LCE3DQ9BYE3 92 aa4□□□□□ -1.77
USH1C-201ENST00000005226 OBSCNQ5VST9 7968 aa4□□□□□ -1.77
USH1C-201ENST00000005226 KRTAP9-7A8MTY7 169 aa4□□□□□ -1.77
USH1C-201ENST00000005226 MT1AP04731 61 aa4□□□□□ -1.77
USH1C-201ENST00000005226 LCE3EQ5T5B0 92 aa3.94□□□□□ -1.78
USH1C-201ENST00000005226 KRTAP5-5Q701N2 237 aaPredicted RBP3.94□□□□□ -1.78
USH1C-201ENST00000005226 PRM1P04553 51 aa3.91□□□□□ -1.78
USH1C-201ENST00000005226 LCE1AQ5T7P2 110 aa3.89□□□□□ -1.79
USH1C-201ENST00000005226 SPRR2EP22531 72 aa3.8□□□□□ -1.8
USH1C-201ENST00000005226 SPRR2BP35325 72 aa3.8□□□□□ -1.8
USH1C-201ENST00000005226 SPRR2AP35326 72 aa3.8□□□□□ -1.8
USH1C-201ENST00000005226 KRTAP5-9P26371 169 aa3.76□□□□□ -1.81
USH1C-201ENST00000005226 KRTAP9-4Q9BYQ2 154 aa3.75□□□□□ -1.81
USH1C-201ENST00000005226 KRTAP6-2Q3LI66 62 aa3.74□□□□□ -1.81
USH1C-201ENST00000005226 SPRR2DP22532 72 aa3.61□□□□□ -1.83
USH1C-201ENST00000005226 MT3P25713 68 aa3.57□□□□□ -1.84
USH1C-201ENST00000005226 KRTAP9-6A0A140TA67 174 aa3.56□□□□□ -1.84
USH1C-201ENST00000005226 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.53□□□□□ -1.84
USH1C-201ENST00000005226 KRTAP6-3Q3LI67 103 aa3.52□□□□□ -1.85
USH1C-201ENST00000005226 LCE4AQ5TA78 99 aa3.49□□□□□ -1.85
USH1C-201ENST00000005226 KRTAP2-2Q9BYT5 123 aa3.41□□□□□ -1.86
USH1C-201ENST00000005226 KRTAP9-9Q9BYP9 154 aa3.39□□□□□ -1.87
USH1C-201ENST00000005226 KRTAP4-6Q9BYQ5 205 aa3.33□□□□□ -1.88
USH1C-201ENST00000005226 MT4P47944 62 aa3.29□□□□□ -1.88
USH1C-201ENST00000005226 KRTAP5-4Q6L8H1 288 aa3.28□□□□□ -1.88
USH1C-201ENST00000005226 NEBP20929 6669 aa3.22□□□□□ -1.89
USH1C-201ENST00000005226 LCE1EQ5T753 118 aa3.2□□□□□ -1.9
USH1C-201ENST00000005226 KRTAP20-2Q3LI61 65 aa3.14□□□□□ -1.91
USH1C-201ENST00000005226 MUC5ACP98088 5654 aa3.14□□□□□ -1.91
USH1C-201ENST00000005226 HMCN1Q96RW7 5635 aa3.12□□□□□ -1.91
USH1C-201ENST00000005226 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.91
USH1C-201ENST00000005226 LCE1DQ5T752 114 aa3.08□□□□□ -1.92
USH1C-201ENST00000005226 KRTAP4-12Q9BQ66 201 aa3□□□□□ -1.93
USH1C-201ENST00000005226 LCE1BQ5T7P3 118 aa2.99□□□□□ -1.93
USH1C-201ENST00000005226 KRTAP4-11Q9BYQ6 195 aa2.99□□□□□ -1.93
USH1C-201ENST00000005226 LCE1FQ5T754 118 aa2.97□□□□□ -1.93
USH1C-201ENST00000005226 KRTAP5-3Q6L8H2 238 aa2.96□□□□□ -1.94
USH1C-201ENST00000005226 KRTAP20-1Q3LI63 56 aa2.91□□□□□ -1.94
USH1C-201ENST00000005226 KRTAP5-10Q6L8G5 202 aa2.89□□□□□ -1.95
USH1C-201ENST00000005226 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.96
USH1C-201ENST00000005226 KRTAP4-2Q9BYR5 136 aa2.76□□□□□ -1.97
USH1C-201ENST00000005226 LCE1CQ5T751 118 aa2.67□□□□□ -1.98
USH1C-201ENST00000005226 KRTAP21-2Q3LI59 83 aa2.62□□□□□ -1.99
USH1C-201ENST00000005226 MUC19Q7Z5P9 8384 aa2.57□□□□□ -2
USH1C-201ENST00000005226 KRTAP4-4Q9BYR3 166 aa2.56□□□□□ -2
USH1C-201ENST00000005226 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.48□□□□□ -2.01
USH1C-201ENST00000005226 KRTAP5-8O75690 187 aa2.43□□□□□ -2.02
USH1C-201ENST00000005226 AHNAK2Q8IVF2 5795 aa2.42□□□□□ -2.02
USH1C-201ENST00000005226 GPR98Q8WXG9 6306 aa2.4□□□□□ -2.03
USH1C-201ENST00000005226 KRTAP21-1Q3LI58 79 aa2.39□□□□□ -2.03
USH1C-201ENST00000005226 MUC5BQ9HC84 5762 aaPredicted RBP2.39□□□□□ -2.03
USH1C-201ENST00000005226 KRTAP5-7Q6L8G8 165 aa2.35□□□□□ -2.03
USH1C-201ENST00000005226 KRTAP5-11Q6L8G4 156 aa2.26□□□□□ -2.05
USH1C-201ENST00000005226 AHNAKQ09666 5890 aaKnown RBP2.06□□□□□ -2.08
USH1C-201ENST00000005226 PHGR1C9JFL3 82 aa1.99□□□□□ -2.09
USH1C-201ENST00000005226 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 79.9 ms