RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 XP32Q5T750 250 aa6.58□□□□□ -1.36
LINC00540-203ENST00000631321 KRTAP3-3Q9BYR6 98 aa6.57□□□□□ -1.36
LINC00540-203ENST00000631321 CSAG1Q6PB30 78 aa6.55□□□□□ -1.36
LINC00540-203ENST00000631321 LINC01554Q52M75 96 aa6.54□□□□□ -1.36
LINC00540-203ENST00000631321 MYCBP2O75592 4640 aa6.52□□□□□ -1.37
LINC00540-203ENST00000631321 KRTAP10-6P60371 365 aaPredicted RBP6.51□□□□□ -1.37
LINC00540-203ENST00000631321 RYR3Q15413 4870 aa6.5□□□□□ -1.37
LINC00540-203ENST00000631321 KRTAP17-1Q9BYP8 105 aa6.5□□□□□ -1.37
LINC00540-203ENST00000631321 DMBT1Q9UGM3 2413 aaPredicted RBP6.5□□□□□ -1.37
LINC00540-203ENST00000631321 MT1HL1P0DM35 61 aa6.49□□□□□ -1.37
LINC00540-203ENST00000631321 KRTAP3-2Q9BYR7 98 aa6.48□□□□□ -1.37
LINC00540-203ENST00000631321 S4R3F8 94 aa6.48□□□□□ -1.37
LINC00540-203ENST00000631321 K7ERS5 55 aa6.46□□□□□ -1.38
LINC00540-203ENST00000631321 KRTAP25-1Q3LHN0 102 aa6.42□□□□□ -1.38
LINC00540-203ENST00000631321 KRTAP13-4Q3LI77 160 aa6.42□□□□□ -1.38
LINC00540-203ENST00000631321 KIAA1109Q2LD37 5005 aa6.42□□□□□ -1.38
LINC00540-203ENST00000631321 TPRXLQ17RH7 258 aa6.36□□□□□ -1.39
LINC00540-203ENST00000631321 P0C880 135 aa6.35□□□□□ -1.39
LINC00540-203ENST00000631321 ROMO1P60602 79 aa6.34□□□□□ -1.4
LINC00540-203ENST00000631321 A0A0D9SG42 100 aa6.31□□□□□ -1.4
LINC00540-203ENST00000631321 LRP2P98164 4655 aa6.3□□□□□ -1.4
LINC00540-203ENST00000631321 LPAP08519 4548 aa6.3□□□□□ -1.4
LINC00540-203ENST00000631321 LCE2DQ5TA82 110 aaPredicted RBP6.27□□□□□ -1.41
LINC00540-203ENST00000631321 EPPK1P58107 5090 aaKnown RBP6.25□□□□□ -1.41
LINC00540-203ENST00000631321 CRIPTQ9P021 101 aa6.23□□□□□ -1.41
LINC00540-203ENST00000631321 KRTAP12-2P59991 146 aa6.2□□□□□ -1.42
LINC00540-203ENST00000631321 M0QZ58 72 aa6.19□□□□□ -1.42
LINC00540-203ENST00000631321 KRTAP12-1P59990 96 aa6.18□□□□□ -1.42
LINC00540-203ENST00000631321 ABCA13Q86UQ4 5058 aa6.18□□□□□ -1.42
LINC00540-203ENST00000631321 KRTAP4-5Q9BYR2 181 aa6.14□□□□□ -1.43
LINC00540-203ENST00000631321 SPINT4Q6UDR6 99 aa6.1□□□□□ -1.43
LINC00540-203ENST00000631321 SEC61BP60468 96 aaKnown RBP6.1□□□□□ -1.43
LINC00540-203ENST00000631321 MUC17Q685J3 4493 aa6.08□□□□□ -1.44
LINC00540-203ENST00000631321 C10orf95Q9H7T3 257 aa6.06□□□□□ -1.44
LINC00540-203ENST00000631321 KRTAP4-1Q9BYQ7 146 aa6.01□□□□□ -1.45
LINC00540-203ENST00000631321 R4GN34 69 aa5.99□□□□□ -1.45
LINC00540-203ENST00000631321 H3BS24 57 aa5.97□□□□□ -1.45
LINC00540-203ENST00000631321 KRTAP19-2Q3LHN2 52 aa5.97□□□□□ -1.45
LINC00540-203ENST00000631321 HERC2O95714 4834 aa5.96□□□□□ -1.45
LINC00540-203ENST00000631321 J3QL48 77 aa5.95□□□□□ -1.46
LINC00540-203ENST00000631321 LORP23490 312 aaPredicted RBP5.93□□□□□ -1.46
LINC00540-203ENST00000631321 KRTAP15-1Q3LI76 137 aa5.86□□□□□ -1.47
LINC00540-203ENST00000631321 BIRC6Q9NR09 4857 aa5.84□□□□□ -1.47
LINC00540-203ENST00000631321 FLGP20930 4061 aaPredicted RBP5.84□□□□□ -1.47
LINC00540-203ENST00000631321 HERC1Q15751 4861 aa5.74□□□□□ -1.49
LINC00540-203ENST00000631321 MUC2Q02817 5179 aa5.71□□□□□ -1.5
LINC00540-203ENST00000631321 HMCN2Q8NDA2 5059 aa5.68□□□□□ -1.5
LINC00540-203ENST00000631321 CAMK2N1Q7Z7J9 78 aa5.67□□□□□ -1.5
LINC00540-203ENST00000631321 PP632Q6XCG6 107 aa5.65□□□□□ -1.5
LINC00540-203ENST00000631321 NDUFAF8A1L188 74 aa5.64□□□□□ -1.51
LINC00540-203ENST00000631321 PLAC4Q8WY50 150 aa5.59□□□□□ -1.51
LINC00540-203ENST00000631321 PCLOQ9Y6V0 5065 aa5.58□□□□□ -1.52
LINC00540-203ENST00000631321 LCE2CQ5TA81 110 aa5.58□□□□□ -1.52
LINC00540-203ENST00000631321 KRTAP23-1A1A580 65 aa5.52□□□□□ -1.53
LINC00540-203ENST00000631321 SPRR2GQ9BYE4 73 aa5.5□□□□□ -1.53
LINC00540-203ENST00000631321 TNP1P09430 55 aa5.49□□□□□ -1.53
LINC00540-203ENST00000631321 FAT4Q6V0I7 4981 aa5.46□□□□□ -1.54
LINC00540-203ENST00000631321 KRTAP19-1Q8IUB9 90 aa5.45□□□□□ -1.54
LINC00540-203ENST00000631321 RNF213Q63HN8 5207 aa5.42□□□□□ -1.54
LINC00540-203ENST00000631321 MT1HP80294 61 aa5.41□□□□□ -1.54
LINC00540-203ENST00000631321 M0R2T5 61 aa5.36□□□□□ -1.55
LINC00540-203ENST00000631321 UBR4Q5T4S7 5183 aa5.34□□□□□ -1.55
LINC00540-203ENST00000631321 MT2AP02795 61 aa5.34□□□□□ -1.56
LINC00540-203ENST00000631321 MT1FP04733 61 aa5.33□□□□□ -1.56
LINC00540-203ENST00000631321 LUZP6Q538Z0 58 aa5.31□□□□□ -1.56
LINC00540-203ENST00000631321 KRTAP9-8Q9BYQ0 159 aa5.31□□□□□ -1.56
LINC00540-203ENST00000631321 KRTAP10-10P60014 251 aa5.29□□□□□ -1.56
LINC00540-203ENST00000631321 SPRR5A0A1B0GTR4 108 aa5.28□□□□□ -1.56
LINC00540-203ENST00000631321 KRTAP19-8Q3LI54 63 aa5.27□□□□□ -1.57
LINC00540-203ENST00000631321 A0A0A0MQY5 61 aa5.26□□□□□ -1.57
LINC00540-203ENST00000631321 LCE2BO14633 110 aa5.23□□□□□ -1.57
LINC00540-203ENST00000631321 LCE3AQ5TA76 89 aa5.2□□□□□ -1.58
LINC00540-203ENST00000631321 MT1BP07438 61 aa5.17□□□□□ -1.58
LINC00540-203ENST00000631321 KRTAP10-5P60370 271 aa5.14□□□□□ -1.59
LINC00540-203ENST00000631321 MT1XP80297 61 aa5.13□□□□□ -1.59
LINC00540-203ENST00000631321 KRTAP8-1Q8IUC2 63 aa5.13□□□□□ -1.59
LINC00540-203ENST00000631321 KRTAP9-3Q9BYQ3 159 aa5.09□□□□□ -1.59
LINC00540-203ENST00000631321 KRTAP10-12P60413 245 aa5.01□□□□□ -1.61
LINC00540-203ENST00000631321 KRTAP12-3P60328 96 aa4.97□□□□□ -1.61
LINC00540-203ENST00000631321 KRTAP10-7P60409 375 aaPredicted RBP4.96□□□□□ -1.62
LINC00540-203ENST00000631321 PRO2289Q9P1D8 64 aa4.93□□□□□ -1.62
LINC00540-203ENST00000631321 LCE2AQ5TA79 106 aaPredicted RBP4.8□□□□□ -1.64
LINC00540-203ENST00000631321 KRTAP19-5Q3LI72 72 aa4.76□□□□□ -1.65
LINC00540-203ENST00000631321 USH2AO75445 5202 aa4.69□□□□□ -1.66
LINC00540-203ENST00000631321 LCE3CQ5T5A8 94 aa4.68□□□□□ -1.66
LINC00540-203ENST00000631321 KRTAP4-8A0A0G2JLE6 195 aa4.62□□□□□ -1.67
LINC00540-203ENST00000631321 KRTAP4-8Q9BYQ9 185 aa4.62□□□□□ -1.67
LINC00540-203ENST00000631321 KMT2DO14686 5537 aa4.62□□□□□ -1.67
LINC00540-203ENST00000631321 INE1O15225 51 aa4.62□□□□□ -1.67
LINC00540-203ENST00000631321 KRTAP19-7Q3SYF9 63 aa4.57□□□□□ -1.68
LINC00540-203ENST00000631321 KRTAP19-4Q3LI73 84 aa4.53□□□□□ -1.68
LINC00540-203ENST00000631321 KRTAP9-6A8MVA2 160 aa4.51□□□□□ -1.69
LINC00540-203ENST00000631321 SSPOA2VEC9 5147 aa4.48□□□□□ -1.69
LINC00540-203ENST00000631321 MT1EP04732 61 aa4.45□□□□□ -1.7
LINC00540-203ENST00000631321 MT1LQ93083 61 aa4.44□□□□□ -1.7
LINC00540-203ENST00000631321 KRTAP4-7Q9BYR0 210 aa4.41□□□□□ -1.7
LINC00540-203ENST00000631321 KRTAP19-6Q3LI70 58 aa4.4□□□□□ -1.7
LINC00540-203ENST00000631321 KRTAP2-3P0C7H8 128 aa4.39□□□□□ -1.71
LINC00540-203ENST00000631321 KRTAP2-4Q9BYR9 128 aa4.39□□□□□ -1.71
LINC00540-203ENST00000631321 KRTAP2-1Q9BYU5 128 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms