RNA–Protein interactions for RNA: ENST00000630907.2

UBE3A-222, Transcript of ubiquitin protein ligase E3A, human

TSL 5

Gene UBE3A, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE3A-222	ENST00000630907	MT1F	P04733	61 aa		12.31	□□□□□ -0.44
UBE3A-222	ENST00000630907	COX7C	P15954	63 aa		12.31	□□□□□ -0.44
UBE3A-222	ENST00000630907	KRTAP3-3	Q9BYR6	98 aa		12.31	□□□□□ -0.44
UBE3A-222	ENST00000630907	KRTAP10-10	P60014	251 aa		12.3	□□□□□ -0.44
UBE3A-222	ENST00000630907	NDUFC1	O43677	76 aa		12.24	□□□□□ -0.45
UBE3A-222	ENST00000630907	ANAPC13	Q9BS18	74 aa		12.2	□□□□□ -0.46
UBE3A-222	ENST00000630907	ACYP2	P14621	99 aa		12.15	□□□□□ -0.46
UBE3A-222	ENST00000630907	SPANXA2-OT1	Q8N9U9	137 aa		12.15	□□□□□ -0.46
UBE3A-222	ENST00000630907	KRTAP9-3	Q9BYQ3	159 aa		12.1	□□□□□ -0.47
UBE3A-222	ENST00000630907	CYSTM1	Q9H1C7	97 aa		12	□□□□□ -0.49
UBE3A-222	ENST00000630907		H7BZZ5	65 aa		11.97	□□□□□ -0.49
UBE3A-222	ENST00000630907		H0YAA0	97 aa		11.96	□□□□□ -0.49
UBE3A-222	ENST00000630907	CHKB-CPT1B	H3BT56	60 aa		11.95	□□□□□ -0.5
UBE3A-222	ENST00000630907	CCDC179	H3BU77	68 aa		11.94	□□□□□ -0.5
UBE3A-222	ENST00000630907	LCE2B	O14633	110 aa		11.91	□□□□□ -0.5
UBE3A-222	ENST00000630907	SPTSSB	Q8NFR3	76 aa		11.89	□□□□□ -0.51
UBE3A-222	ENST00000630907	ADM2	Q7Z4H4	148 aa		11.87	□□□□□ -0.51
UBE3A-222	ENST00000630907	FSIP2	Q5CZC0	6907 aa		11.87	□□□□□ -0.51
UBE3A-222	ENST00000630907	USH2A	O75445	5202 aa		11.85	□□□□□ -0.51
UBE3A-222	ENST00000630907	CRCT1	Q9UGL9	99 aa		11.79	□□□□□ -0.52
UBE3A-222	ENST00000630907	COA5	Q86WW8	74 aa		11.78	□□□□□ -0.52
UBE3A-222	ENST00000630907	CRIPT	Q9P021	101 aa		11.78	□□□□□ -0.52
UBE3A-222	ENST00000630907	KRTAP19-1	Q8IUB9	90 aa		11.77	□□□□□ -0.53
UBE3A-222	ENST00000630907	KRTAP9-6	A0A140TA67	174 aa		11.74	□□□□□ -0.53
UBE3A-222	ENST00000630907	SPRR2G	Q9BYE4	73 aa		11.72	□□□□□ -0.53
UBE3A-222	ENST00000630907	KRTAP3-2	Q9BYR7	98 aa		11.67	□□□□□ -0.54
UBE3A-222	ENST00000630907		P0C880	135 aa		11.66	□□□□□ -0.54
UBE3A-222	ENST00000630907	ATP5E	P56381	51 aa	Predicted RBP	11.6	□□□□□ -0.55
UBE3A-222	ENST00000630907	SSPO	A2VEC9	5147 aa		11.59	□□□□□ -0.55
UBE3A-222	ENST00000630907	KRTAP19-8	Q3LI54	63 aa		11.55	□□□□□ -0.56
UBE3A-222	ENST00000630907	TMEM258	P61165	79 aa		11.52	□□□□□ -0.57
UBE3A-222	ENST00000630907		Q5VV11	94 aa		11.51	□□□□□ -0.57
UBE3A-222	ENST00000630907		R4GN34	69 aa		11.51	□□□□□ -0.57
UBE3A-222	ENST00000630907	MT1B	P07438	61 aa		11.46	□□□□□ -0.57
UBE3A-222	ENST00000630907		M0QZ58	72 aa		11.45	□□□□□ -0.58
UBE3A-222	ENST00000630907	KRTAP19-6	Q3LI70	58 aa		11.4	□□□□□ -0.58
UBE3A-222	ENST00000630907	SEC61G	P60059	68 aa		11.36	□□□□□ -0.59
UBE3A-222	ENST00000630907	SERP1	Q9Y6X1	66 aa		11.33	□□□□□ -0.6
UBE3A-222	ENST00000630907	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	11.27	□□□□□ -0.61
UBE3A-222	ENST00000630907	LINC01554	Q52M75	96 aa		11.26	□□□□□ -0.61
UBE3A-222	ENST00000630907	PCP4	P48539	62 aa		11.22	□□□□□ -0.61
UBE3A-222	ENST00000630907	PLAC4	Q8WY50	150 aa		11.18	□□□□□ -0.62
UBE3A-222	ENST00000630907		A0A1B0GU69	56 aa		11.17	□□□□□ -0.62
UBE3A-222	ENST00000630907	KRTAP13-4	Q3LI77	160 aa		11.14	□□□□□ -0.63
UBE3A-222	ENST00000630907		A6NN06	94 aa		11.12	□□□□□ -0.63
UBE3A-222	ENST00000630907		A0A1B0GU33	70 aa		11.11	□□□□□ -0.63
UBE3A-222	ENST00000630907	KRTAP10-5	P60370	271 aa		11.08	□□□□□ -0.64
UBE3A-222	ENST00000630907	LINC01558	Q9Y6Z2	57 aa		11.05	□□□□□ -0.64
UBE3A-222	ENST00000630907	PRR15L	Q9BU68	103 aa		11.02	□□□□□ -0.65
UBE3A-222	ENST00000630907	SPATA8	Q6RVD6	105 aa		10.97	□□□□□ -0.65
UBE3A-222	ENST00000630907	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	10.93	□□□□□ -0.66
UBE3A-222	ENST00000630907	PRO2289	Q9P1D8	64 aa		10.92	□□□□□ -0.66
UBE3A-222	ENST00000630907		A0A0D9SG42	100 aa		10.89	□□□□□ -0.67
UBE3A-222	ENST00000630907	MT1X	P80297	61 aa		10.89	□□□□□ -0.67
UBE3A-222	ENST00000630907	MACF1	Q9UPN3	7388 aa	Known RBP	10.84	□□□□□ -0.67
UBE3A-222	ENST00000630907	SMIM26	A0A096LP01	95 aa		10.8	□□□□□ -0.68
UBE3A-222	ENST00000630907		V9GYY9	64 aa		10.79	□□□□□ -0.68
UBE3A-222	ENST00000630907	RPS28	P62857	69 aa	Known RBP	10.74	□□□□□ -0.69
UBE3A-222	ENST00000630907		Q1T7F1	81 aa		10.74	□□□□□ -0.69
UBE3A-222	ENST00000630907	SPINT4	Q6UDR6	99 aa		10.7	□□□□□ -0.7
UBE3A-222	ENST00000630907		A8MU10	97 aa		10.69	□□□□□ -0.7
UBE3A-222	ENST00000630907	CAMK2N1	Q7Z7J9	78 aa		10.69	□□□□□ -0.7
UBE3A-222	ENST00000630907	SYNE2	Q8WXH0	6885 aa	Known RBP	10.68	□□□□□ -0.7
UBE3A-222	ENST00000630907	UQCR11	O14957	56 aa		10.66	□□□□□ -0.7
UBE3A-222	ENST00000630907	KRTAP12-1	P59990	96 aa		10.66	□□□□□ -0.7
UBE3A-222	ENST00000630907	KRTAP9-7	A8MTY7	169 aa		10.62	□□□□□ -0.71
UBE3A-222	ENST00000630907	PSPHP1	O15172	72 aa		10.62	□□□□□ -0.71
UBE3A-222	ENST00000630907	KRTAP12-2	P59991	146 aa		10.6	□□□□□ -0.71
UBE3A-222	ENST00000630907	MIR22HG	Q0VDD5	57 aa		10.48	□□□□□ -0.73
UBE3A-222	ENST00000630907	KRTAP6-3	Q3LI67	103 aa		10.44	□□□□□ -0.74
UBE3A-222	ENST00000630907	KRTAP10-7	P60409	375 aa	Predicted RBP	10.41	□□□□□ -0.74
UBE3A-222	ENST00000630907	KRTAP10-12	P60413	245 aa		10.36	□□□□□ -0.75
UBE3A-222	ENST00000630907	KMT2D	O14686	5537 aa		10.32	□□□□□ -0.76
UBE3A-222	ENST00000630907		A6NED7	52 aa		10.31	□□□□□ -0.76
UBE3A-222	ENST00000630907	KRTAP4-8	A0A0G2JLE6	195 aa		10.23	□□□□□ -0.77
UBE3A-222	ENST00000630907	KRTAP4-8	Q9BYQ9	185 aa		10.23	□□□□□ -0.77
UBE3A-222	ENST00000630907	KRTAP8-1	Q8IUC2	63 aa		10.22	□□□□□ -0.77
UBE3A-222	ENST00000630907	KRTAP5-9	P26371	169 aa		10.2	□□□□□ -0.78
UBE3A-222	ENST00000630907		K7ERS5	55 aa		10.18	□□□□□ -0.78
UBE3A-222	ENST00000630907	C10orf95	Q9H7T3	257 aa		10.15	□□□□□ -0.78
UBE3A-222	ENST00000630907	SPRR2F	Q96RM1	72 aa		10.05	□□□□□ -0.8
UBE3A-222	ENST00000630907	MUC12	Q9UKN1	5478 aa		10.02	□□□□□ -0.81
UBE3A-222	ENST00000630907	TNP1	P09430	55 aa		10.02	□□□□□ -0.81
UBE3A-222	ENST00000630907	NEB	P20929	6669 aa		10.01	□□□□□ -0.81
UBE3A-222	ENST00000630907	CDC42SE1	Q9NRR8	79 aa		9.97	□□□□□ -0.81
UBE3A-222	ENST00000630907	MDN1	Q9NU22	5596 aa		9.87	□□□□□ -0.83
UBE3A-222	ENST00000630907	SPRR2E	P22531	72 aa		9.77	□□□□□ -0.85
UBE3A-222	ENST00000630907	SPRR2B	P35325	72 aa		9.77	□□□□□ -0.85
UBE3A-222	ENST00000630907	SPRR2A	P35326	72 aa		9.77	□□□□□ -0.85
UBE3A-222	ENST00000630907	KRTAP25-1	Q3LHN0	102 aa		9.75	□□□□□ -0.85
UBE3A-222	ENST00000630907	LCE3A	Q5TA76	89 aa		9.74	□□□□□ -0.85
UBE3A-222	ENST00000630907	KRTAP19-7	Q3SYF9	63 aa		9.73	□□□□□ -0.85
UBE3A-222	ENST00000630907	LCE1A	Q5T7P2	110 aa		9.71	□□□□□ -0.86
UBE3A-222	ENST00000630907	KRTAP19-5	Q3LI72	72 aa		9.66	□□□□□ -0.86
UBE3A-222	ENST00000630907	MT1E	P04732	61 aa		9.63	□□□□□ -0.87
UBE3A-222	ENST00000630907	ROMO1	P60602	79 aa		9.6	□□□□□ -0.87
UBE3A-222	ENST00000630907	BRK1	Q8WUW1	75 aa		9.54	□□□□□ -0.88
UBE3A-222	ENST00000630907	SPRR2D	P22532	72 aa		9.43	□□□□□ -0.9
UBE3A-222	ENST00000630907	KRTAP19-3	Q7Z4W3	81 aa		9.42	□□□□□ -0.9
UBE3A-222	ENST00000630907	KRTAP23-1	A1A580	65 aa		9.41	□□□□□ -0.9

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