RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 TPRXLQ17RH7 258 aa2.72□□□□□ -1.97
LINC00550-201ENST00000629293 SPANXA2-OT1Q8N9U9 137 aa2.71□□□□□ -1.97
LINC00550-201ENST00000629293 C1orf64Q8NEQ6 169 aa2.71□□□□□ -1.97
LINC00550-201ENST00000629293 LINC00208Q96KT6 92 aa2.71□□□□□ -1.98
LINC00550-201ENST00000629293 C8orf17Q9NRJ1 99 aa2.71□□□□□ -1.98
LINC00550-201ENST00000629293 A0A1B0GVX0 72 aa2.7□□□□□ -1.98
LINC00550-201ENST00000629293 TP53AIP1Q9HCN2 124 aa2.69□□□□□ -1.98
LINC00550-201ENST00000629293 CD164Q04900 197 aa2.69□□□□□ -1.98
LINC00550-201ENST00000629293 Q1T7F1 81 aa2.68□□□□□ -1.98
LINC00550-201ENST00000629293 CRCT1Q9UGL9 99 aa2.68□□□□□ -1.98
LINC00550-201ENST00000629293 IGHV6-1A0A0B4J1U7 121 aa2.67□□□□□ -1.98
LINC00550-201ENST00000629293 MRPL34Q9BQ48 92 aaKnown RBP2.67□□□□□ -1.98
LINC00550-201ENST00000629293 KRTAP4-1Q9BYQ7 146 aa2.67□□□□□ -1.98
LINC00550-201ENST00000629293 KRTAP13-3Q3SY46 172 aa2.67□□□□□ -1.98
LINC00550-201ENST00000629293 SPAG11AQ6PDA7 123 aa2.67□□□□□ -1.98
LINC00550-201ENST00000629293 SSBP3-AS1Q7Z2R9 100 aa2.67□□□□□ -1.98
LINC00550-201ENST00000629293 PRO0628Q9UI54 55 aa2.67□□□□□ -1.98
LINC00550-201ENST00000629293 NDUFAF8A1L188 74 aa2.66□□□□□ -1.98
LINC00550-201ENST00000629293 HMCN1Q96RW7 5635 aa2.66□□□□□ -1.98
LINC00550-201ENST00000629293 MUC17Q685J3 4493 aa2.66□□□□□ -1.98
LINC00550-201ENST00000629293 M0R2T5 61 aa2.65□□□□□ -1.99
LINC00550-201ENST00000629293 V9GYY9 64 aa2.65□□□□□ -1.99
LINC00550-201ENST00000629293 C9orf92A6NGG3 77 aa2.64□□□□□ -1.99
LINC00550-201ENST00000629293 C8orf87E5RJ46 101 aa2.64□□□□□ -1.99
LINC00550-201ENST00000629293 SPINK1P00995 79 aa2.64□□□□□ -1.99
LINC00550-201ENST00000629293 PCOTHQ58A44 107 aa2.63□□□□□ -1.99
LINC00550-201ENST00000629293 C1orf195Q5TG92 126 aa2.63□□□□□ -1.99
LINC00550-201ENST00000629293 Q5W150 140 aa2.63□□□□□ -1.99
LINC00550-201ENST00000629293 COA5Q86WW8 74 aa2.63□□□□□ -1.99
LINC00550-201ENST00000629293 NDUFS5O43920 106 aa2.63□□□□□ -1.99
LINC00550-201ENST00000629293 LOC101927531A0A1B0GV80 90 aa2.62□□□□□ -1.99
LINC00550-201ENST00000629293 COX6B2Q6YFQ2 88 aa2.62□□□□□ -1.99
LINC00550-201ENST00000629293 BRK1Q8WUW1 75 aa2.62□□□□□ -1.99
LINC00550-201ENST00000629293 Q5VV11 94 aa2.61□□□□□ -1.99
LINC00550-201ENST00000629293 PSPHP1O15172 72 aa2.61□□□□□ -1.99
LINC00550-201ENST00000629293 A8MUN3 132 aa2.61□□□□□ -1.99
LINC00550-201ENST00000629293 LIMD2Q9BT23 127 aa2.61□□□□□ -1.99
LINC00550-201ENST00000629293 HRES1P13985 223 aa2.6□□□□□ -1.99
LINC00550-201ENST00000629293 LCE1FQ5T754 118 aa2.6□□□□□ -1.99
LINC00550-201ENST00000629293 LINC00313P59037 77 aa2.6□□□□□ -1.99
LINC00550-201ENST00000629293 MT1HP80294 61 aa2.59□□□□□ -2
LINC00550-201ENST00000629293 LINC01558Q9Y6Z2 57 aa2.58□□□□□ -2
LINC00550-201ENST00000629293 DMAC1Q96GE9 116 aa2.57□□□□□ -2
LINC00550-201ENST00000629293 PRR15LQ9BU68 103 aa2.57□□□□□ -2
LINC00550-201ENST00000629293 USH2AO75445 5202 aa2.57□□□□□ -2
LINC00550-201ENST00000629293 RPS29P62273 56 aaKnown RBP2.57□□□□□ -2
LINC00550-201ENST00000629293 KRTAP10-6P60371 365 aaPredicted RBP2.56□□□□□ -2
LINC00550-201ENST00000629293 A8MU10 97 aa2.55□□□□□ -2
LINC00550-201ENST00000629293 CHKB-CPT1BH3BT56 60 aa2.55□□□□□ -2
LINC00550-201ENST00000629293 KRTAP19-2Q3LHN2 52 aa2.55□□□□□ -2
LINC00550-201ENST00000629293 ACYP2P14621 99 aa2.55□□□□□ -2
LINC00550-201ENST00000629293 LCA10Q71F78 164 aa2.54□□□□□ -2
LINC00550-201ENST00000629293 KRTAP2-2Q9BYT5 123 aa2.54□□□□□ -2
LINC00550-201ENST00000629293 FLGP20930 4061 aaPredicted RBP2.52□□□□□ -2.01
LINC00550-201ENST00000629293 SSPOA2VEC9 5147 aa2.52□□□□□ -2.01
LINC00550-201ENST00000629293 CDC42SE1Q9NRR8 79 aa2.52□□□□□ -2.01
LINC00550-201ENST00000629293 A6NED7 52 aa2.52□□□□□ -2.01
LINC00550-201ENST00000629293 KRTAP5-9P26371 169 aa2.51□□□□□ -2.01
LINC00550-201ENST00000629293 SPINK7P58062 85 aa2.51□□□□□ -2.01
LINC00550-201ENST00000629293 ATP11AUNQ6ZP68 121 aa2.5□□□□□ -2.01
LINC00550-201ENST00000629293 RPL37P61927 97 aaKnown RBP2.5□□□□□ -2.01
LINC00550-201ENST00000629293 C20orf166-AS1Q96NR2 134 aa2.5□□□□□ -2.01
LINC00550-201ENST00000629293 A8MUU9 505 aa2.49□□□□□ -2.01
LINC00550-201ENST00000629293 C7orf65Q6ZTY9 151 aa2.49□□□□□ -2.01
LINC00550-201ENST00000629293 MT3P25713 68 aa2.49□□□□□ -2.01
LINC00550-201ENST00000629293 A6NN06 94 aa2.48□□□□□ -2.01
LINC00550-201ENST00000629293 FCGBPQ9Y6R7 5405 aaPredicted RBP2.48□□□□□ -2.01
LINC00550-201ENST00000629293 PMAIP1Q13794 54 aa2.48□□□□□ -2.01
LINC00550-201ENST00000629293 CAMK2N1Q7Z7J9 78 aa2.47□□□□□ -2.01
LINC00550-201ENST00000629293 SYNE2Q8WXH0 6885 aaKnown RBP2.46□□□□□ -2.02
LINC00550-201ENST00000629293 A0A1B0GU69 56 aa2.46□□□□□ -2.02
LINC00550-201ENST00000629293 SPTSSBQ8NFR3 76 aa2.46□□□□□ -2.02
LINC00550-201ENST00000629293 SPATA8Q6RVD6 105 aa2.45□□□□□ -2.02
LINC00550-201ENST00000629293 KTN1-AS1Q86SY8 53 aa2.45□□□□□ -2.02
LINC00550-201ENST00000629293 RBM12B-AS1Q9P1G2 102 aa2.44□□□□□ -2.02
LINC00550-201ENST00000629293 MACF1Q9UPN3 7388 aaKnown RBP2.43□□□□□ -2.02
LINC00550-201ENST00000629293 UQCR11O14957 56 aa2.42□□□□□ -2.02
LINC00550-201ENST00000629293 KRTAP10-10P60014 251 aa2.42□□□□□ -2.02
LINC00550-201ENST00000629293 MIR22HGQ0VDD5 57 aa2.41□□□□□ -2.02
LINC00550-201ENST00000629293 MT2AP02795 61 aa2.39□□□□□ -2.03
LINC00550-201ENST00000629293 MT1FP04733 61 aa2.38□□□□□ -2.03
LINC00550-201ENST00000629293 H0YAA0 97 aa2.37□□□□□ -2.03
LINC00550-201ENST00000629293 H1FX-AS1Q4G0G2 97 aa2.35□□□□□ -2.03
LINC00550-201ENST00000629293 KRTAP10-12P60413 245 aa2.35□□□□□ -2.03
LINC00550-201ENST00000629293 MUC5BQ9HC84 5762 aaPredicted RBP2.34□□□□□ -2.03
LINC00550-201ENST00000629293 A0A1B0GU33 70 aa2.34□□□□□ -2.03
LINC00550-201ENST00000629293 ADM2Q7Z4H4 148 aa2.33□□□□□ -2.04
LINC00550-201ENST00000629293 LCE3CQ5T5A8 94 aa2.33□□□□□ -2.04
LINC00550-201ENST00000629293 GPR98Q8WXG9 6306 aa2.32□□□□□ -2.04
LINC00550-201ENST00000629293 S4R3F8 94 aa2.3□□□□□ -2.04
LINC00550-201ENST00000629293 MUC12Q9UKN1 5478 aa2.3□□□□□ -2.04
LINC00550-201ENST00000629293 LUZP6Q538Z0 58 aa2.29□□□□□ -2.04
LINC00550-201ENST00000629293 KRTAP13-4Q3LI77 160 aa2.28□□□□□ -2.04
LINC00550-201ENST00000629293 KRTAP19-6Q3LI70 58 aa2.27□□□□□ -2.05
LINC00550-201ENST00000629293 CSAG1Q6PB30 78 aa2.26□□□□□ -2.05
LINC00550-201ENST00000629293 KRTAP5-4Q6L8H1 288 aa2.26□□□□□ -2.05
LINC00550-201ENST00000629293 P0C880 135 aa2.25□□□□□ -2.05
LINC00550-201ENST00000629293 NEBP20929 6669 aa2.25□□□□□ -2.05
LINC00550-201ENST00000629293 LINC01554Q52M75 96 aa2.25□□□□□ -2.05
LINC00550-201ENST00000629293 KRTAP6-3Q3LI67 103 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms