RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 BIRC6Q9NR09 4857 aa11.22□□□□□ -0.61
PNKP-220ENST00000627232 HERC2O95714 4834 aa11.19□□□□□ -0.62
PNKP-220ENST00000627232 UQCR11O14957 56 aa11.17□□□□□ -0.62
PNKP-220ENST00000627232 SEC61BP60468 96 aaKnown RBP11.17□□□□□ -0.62
PNKP-220ENST00000627232 S4R3F8 94 aa11.14□□□□□ -0.63
PNKP-220ENST00000627232 ABCA13Q86UQ4 5058 aa11.14□□□□□ -0.63
PNKP-220ENST00000627232 H1FX-AS1Q4G0G2 97 aa11.14□□□□□ -0.63
PNKP-220ENST00000627232 SPATA8Q6RVD6 105 aa11.13□□□□□ -0.63
PNKP-220ENST00000627232 KRTAP3-3Q9BYR6 98 aa11.12□□□□□ -0.63
PNKP-220ENST00000627232 RBM12B-AS1Q9P1G2 102 aa11.12□□□□□ -0.63
PNKP-220ENST00000627232 MIR22HGQ0VDD5 57 aa11.07□□□□□ -0.64
PNKP-220ENST00000627232 LRP2P98164 4655 aa11.06□□□□□ -0.64
PNKP-220ENST00000627232 LPAP08519 4548 aa11.01□□□□□ -0.65
PNKP-220ENST00000627232 PMAIP1Q13794 54 aa10.97□□□□□ -0.65
PNKP-220ENST00000627232 A0A1B0GU33 70 aa10.96□□□□□ -0.65
PNKP-220ENST00000627232 A6NN06 94 aa10.88□□□□□ -0.67
PNKP-220ENST00000627232 KRTAP4-1Q9BYQ7 146 aa10.86□□□□□ -0.67
PNKP-220ENST00000627232 H0YAA0 97 aa10.85□□□□□ -0.67
PNKP-220ENST00000627232 KRTAP10-6P60371 365 aaPredicted RBP10.85□□□□□ -0.67
PNKP-220ENST00000627232 CSAG1Q6PB30 78 aa10.84□□□□□ -0.67
PNKP-220ENST00000627232 KRTAP3-2Q9BYR7 98 aa10.84□□□□□ -0.67
PNKP-220ENST00000627232 MUC17Q685J3 4493 aa10.78□□□□□ -0.68
PNKP-220ENST00000627232 ADM2Q7Z4H4 148 aa10.68□□□□□ -0.7
PNKP-220ENST00000627232 P0C880 135 aa10.67□□□□□ -0.7
PNKP-220ENST00000627232 KRTAP19-2Q3LHN2 52 aa10.67□□□□□ -0.7
PNKP-220ENST00000627232 KTN1-AS1Q86SY8 53 aa10.65□□□□□ -0.7
PNKP-220ENST00000627232 KRTAP13-4Q3LI77 160 aa10.58□□□□□ -0.72
PNKP-220ENST00000627232 PCLOQ9Y6V0 5065 aa10.54□□□□□ -0.72
PNKP-220ENST00000627232 K7ERS5 55 aa10.51□□□□□ -0.73
PNKP-220ENST00000627232 M0QZ58 72 aa10.48□□□□□ -0.73
PNKP-220ENST00000627232 HERC1Q15751 4861 aa10.46□□□□□ -0.73
PNKP-220ENST00000627232 HMCN2Q8NDA2 5059 aa10.44□□□□□ -0.74
PNKP-220ENST00000627232 A0A0D9SG42 100 aa10.41□□□□□ -0.74
PNKP-220ENST00000627232 R4GN34 69 aa10.27□□□□□ -0.77
PNKP-220ENST00000627232 LCE2CQ5TA81 110 aa10.25□□□□□ -0.77
PNKP-220ENST00000627232 KRTAP12-1P59990 96 aa10.23□□□□□ -0.77
PNKP-220ENST00000627232 FLGP20930 4061 aaPredicted RBP10.22□□□□□ -0.77
PNKP-220ENST00000627232 PRAC1Q96KF2 57 aa10.22□□□□□ -0.77
PNKP-220ENST00000627232 KRTAP12-2P59991 146 aa10.21□□□□□ -0.78
PNKP-220ENST00000627232 LORP23490 312 aaPredicted RBP10.18□□□□□ -0.78
PNKP-220ENST00000627232 SPINT4Q6UDR6 99 aa10.15□□□□□ -0.78
PNKP-220ENST00000627232 ROMO1P60602 79 aa10.14□□□□□ -0.79
PNKP-220ENST00000627232 LINC01554Q52M75 96 aa10.07□□□□□ -0.8
PNKP-220ENST00000627232 CRIPTQ9P021 101 aa10.07□□□□□ -0.8
PNKP-220ENST00000627232 MUC2Q02817 5179 aa10.04□□□□□ -0.8
PNKP-220ENST00000627232 MT1HP80294 61 aa10.01□□□□□ -0.81
PNKP-220ENST00000627232 M0R2T5 61 aa9.93□□□□□ -0.82
PNKP-220ENST00000627232 KRTAP25-1Q3LHN0 102 aa9.92□□□□□ -0.82
PNKP-220ENST00000627232 RNF213Q63HN8 5207 aa9.87□□□□□ -0.83
PNKP-220ENST00000627232 UBR4Q5T4S7 5183 aa9.77□□□□□ -0.85
PNKP-220ENST00000627232 SPRR2GQ9BYE4 73 aa9.74□□□□□ -0.85
PNKP-220ENST00000627232 MT2AP02795 61 aa9.72□□□□□ -0.85
PNKP-220ENST00000627232 KRTAP9-8Q9BYQ0 159 aa9.71□□□□□ -0.86
PNKP-220ENST00000627232 CAMK2N1Q7Z7J9 78 aa9.66□□□□□ -0.86
PNKP-220ENST00000627232 FAT4Q6V0I7 4981 aa9.66□□□□□ -0.86
PNKP-220ENST00000627232 MT1FP04733 61 aa9.66□□□□□ -0.86
PNKP-220ENST00000627232 KRTAP19-1Q8IUB9 90 aa9.66□□□□□ -0.86
PNKP-220ENST00000627232 C10orf95Q9H7T3 257 aa9.66□□□□□ -0.86
PNKP-220ENST00000627232 KRTAP10-10P60014 251 aa9.64□□□□□ -0.87
PNKP-220ENST00000627232 PLAC4Q8WY50 150 aa9.51□□□□□ -0.89
PNKP-220ENST00000627232 KRTAP19-8Q3LI54 63 aa9.44□□□□□ -0.9
PNKP-220ENST00000627232 KRTAP9-3Q9BYQ3 159 aa9.34□□□□□ -0.91
PNKP-220ENST00000627232 LCE2AQ5TA79 106 aaPredicted RBP9.33□□□□□ -0.92
PNKP-220ENST00000627232 TNP1P09430 55 aa9.29□□□□□ -0.92
PNKP-220ENST00000627232 PP632Q6XCG6 107 aa9.27□□□□□ -0.93
PNKP-220ENST00000627232 MT1BP07438 61 aa9.26□□□□□ -0.93
PNKP-220ENST00000627232 KRTAP23-1A1A580 65 aa9.18□□□□□ -0.94
PNKP-220ENST00000627232 MT1XP80297 61 aa9.05□□□□□ -0.96
PNKP-220ENST00000627232 KRTAP10-5P60370 271 aa9.04□□□□□ -0.96
PNKP-220ENST00000627232 LCE2BO14633 110 aa9□□□□□ -0.97
PNKP-220ENST00000627232 PRO2289Q9P1D8 64 aa8.9□□□□□ -0.98
PNKP-220ENST00000627232 KRTAP15-1Q3LI76 137 aa8.9□□□□□ -0.99
PNKP-220ENST00000627232 LCE3AQ5TA76 89 aa8.81□□□□□ -1
PNKP-220ENST00000627232 KRTAP10-12P60413 245 aa8.71□□□□□ -1.01
PNKP-220ENST00000627232 KRTAP10-7P60409 375 aaPredicted RBP8.69□□□□□ -1.02
PNKP-220ENST00000627232 KRTAP8-1Q8IUC2 63 aa8.68□□□□□ -1.02
PNKP-220ENST00000627232 KRTAP12-3P60328 96 aa8.45□□□□□ -1.06
PNKP-220ENST00000627232 USH2AO75445 5202 aa8.43□□□□□ -1.06
PNKP-220ENST00000627232 SPRR5A0A1B0GTR4 108 aa8.39□□□□□ -1.07
PNKP-220ENST00000627232 KRTAP19-6Q3LI70 58 aa8.38□□□□□ -1.07
PNKP-220ENST00000627232 NDUFAF8A1L188 74 aa8.34□□□□□ -1.07
PNKP-220ENST00000627232 LCE2DQ5TA82 110 aaPredicted RBP8.34□□□□□ -1.07
PNKP-220ENST00000627232 LUZP6Q538Z0 58 aa8.27□□□□□ -1.09
PNKP-220ENST00000627232 KRTAP19-5Q3LI72 72 aa8.26□□□□□ -1.09
PNKP-220ENST00000627232 KRTAP4-8A0A0G2JLE6 195 aa8.23□□□□□ -1.09
PNKP-220ENST00000627232 KRTAP4-8Q9BYQ9 185 aa8.23□□□□□ -1.09
PNKP-220ENST00000627232 SSPOA2VEC9 5147 aa8.22□□□□□ -1.09
PNKP-220ENST00000627232 KRTAP19-7Q3SYF9 63 aa8.06□□□□□ -1.12
PNKP-220ENST00000627232 H3BS24 57 aa7.97□□□□□ -1.13
PNKP-220ENST00000627232 KRTAP19-4Q3LI73 84 aa7.93□□□□□ -1.14
PNKP-220ENST00000627232 LCE3CQ5T5A8 94 aa7.93□□□□□ -1.14
PNKP-220ENST00000627232 KRTAP9-2Q9BYQ4 174 aa7.93□□□□□ -1.14
PNKP-220ENST00000627232 MT1EP04732 61 aa7.9□□□□□ -1.14
PNKP-220ENST00000627232 KMT2DO14686 5537 aa7.87□□□□□ -1.15
PNKP-220ENST00000627232 MT1LQ93083 61 aa7.8□□□□□ -1.16
PNKP-220ENST00000627232 FSIP2Q5CZC0 6907 aa7.75□□□□□ -1.17
PNKP-220ENST00000627232 FCGBPQ9Y6R7 5405 aaPredicted RBP7.7□□□□□ -1.18
PNKP-220ENST00000627232 KRTAP9-6A0A140TA67 174 aa7.69□□□□□ -1.18
PNKP-220ENST00000627232 KRTAP4-7Q9BYR0 210 aa7.57□□□□□ -1.2
PNKP-220ENST00000627232 CRCT1Q9UGL9 99 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms