RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 KRTAP3-1Q9BYR8 98 aa10.32□□□□□ -0.76
CHRNA4-209ENST00000627000 ABCA13Q86UQ4 5058 aa10.3□□□□□ -0.76
CHRNA4-209ENST00000627000 SPATA8Q6RVD6 105 aa10.26□□□□□ -0.77
CHRNA4-209ENST00000627000 UQCR11O14957 56 aa10.24□□□□□ -0.77
CHRNA4-209ENST00000627000 BIRC6Q9NR09 4857 aa10.2□□□□□ -0.78
CHRNA4-209ENST00000627000 MIR22HGQ0VDD5 57 aa10.2□□□□□ -0.78
CHRNA4-209ENST00000627000 TPRXLQ17RH7 258 aa10.19□□□□□ -0.78
CHRNA4-209ENST00000627000 COX6B2Q6YFQ2 88 aa10.19□□□□□ -0.78
CHRNA4-209ENST00000627000 LPAP08519 4548 aa10.19□□□□□ -0.78
CHRNA4-209ENST00000627000 LRP2P98164 4655 aa10.18□□□□□ -0.78
CHRNA4-209ENST00000627000 HERC2O95714 4834 aa10.18□□□□□ -0.78
CHRNA4-209ENST00000627000 J3QL48 77 aa10.09□□□□□ -0.79
CHRNA4-209ENST00000627000 PRAC1Q96KF2 57 aa10.05□□□□□ -0.8
CHRNA4-209ENST00000627000 LINC01554Q52M75 96 aa9.97□□□□□ -0.81
CHRNA4-209ENST00000627000 ADM2Q7Z4H4 148 aa9.96□□□□□ -0.82
CHRNA4-209ENST00000627000 KRTAP3-3Q9BYR6 98 aa9.92□□□□□ -0.82
CHRNA4-209ENST00000627000 S4R3F8 94 aa9.86□□□□□ -0.83
CHRNA4-209ENST00000627000 H1FX-AS1Q4G0G2 97 aa9.84□□□□□ -0.83
CHRNA4-209ENST00000627000 SEC61BP60468 96 aaKnown RBP9.81□□□□□ -0.84
CHRNA4-209ENST00000627000 CSAG1Q6PB30 78 aa9.8□□□□□ -0.84
CHRNA4-209ENST00000627000 PCLOQ9Y6V0 5065 aa9.79□□□□□ -0.84
CHRNA4-209ENST00000627000 MUC17Q685J3 4493 aa9.77□□□□□ -0.85
CHRNA4-209ENST00000627000 KRTAP4-1Q9BYQ7 146 aa9.76□□□□□ -0.85
CHRNA4-209ENST00000627000 A0A1B0GU33 70 aa9.73□□□□□ -0.85
CHRNA4-209ENST00000627000 H0YAA0 97 aa9.7□□□□□ -0.86
CHRNA4-209ENST00000627000 HERC1Q15751 4861 aa9.68□□□□□ -0.86
CHRNA4-209ENST00000627000 KRTAP10-6P60371 365 aaPredicted RBP9.67□□□□□ -0.86
CHRNA4-209ENST00000627000 KRTAP3-2Q9BYR7 98 aa9.65□□□□□ -0.86
CHRNA4-209ENST00000627000 K7ERS5 55 aa9.63□□□□□ -0.87
CHRNA4-209ENST00000627000 HMCN2Q8NDA2 5059 aa9.59□□□□□ -0.87
CHRNA4-209ENST00000627000 KRTAP25-1Q3LHN0 102 aa9.57□□□□□ -0.88
CHRNA4-209ENST00000627000 P0C880 135 aa9.56□□□□□ -0.88
CHRNA4-209ENST00000627000 KRTAP19-2Q3LHN2 52 aa9.51□□□□□ -0.89
CHRNA4-209ENST00000627000 KRTAP13-4Q3LI77 160 aa9.51□□□□□ -0.89
CHRNA4-209ENST00000627000 MUC2Q02817 5179 aa9.49□□□□□ -0.89
CHRNA4-209ENST00000627000 A0A0D9SG42 100 aa9.36□□□□□ -0.91
CHRNA4-209ENST00000627000 H3BS24 57 aa9.34□□□□□ -0.91
CHRNA4-209ENST00000627000 ROMO1P60602 79 aa9.33□□□□□ -0.92
CHRNA4-209ENST00000627000 FLGP20930 4061 aaPredicted RBP9.23□□□□□ -0.93
CHRNA4-209ENST00000627000 M0QZ58 72 aa9.2□□□□□ -0.94
CHRNA4-209ENST00000627000 LORP23490 312 aaPredicted RBP9.19□□□□□ -0.94
CHRNA4-209ENST00000627000 UBR4Q5T4S7 5183 aa9.16□□□□□ -0.94
CHRNA4-209ENST00000627000 CRIPTQ9P021 101 aa9.15□□□□□ -0.94
CHRNA4-209ENST00000627000 LCE2CQ5TA81 110 aa9.14□□□□□ -0.95
CHRNA4-209ENST00000627000 KRTAP12-2P59991 146 aa9.14□□□□□ -0.95
CHRNA4-209ENST00000627000 RNF213Q63HN8 5207 aa9.13□□□□□ -0.95
CHRNA4-209ENST00000627000 R4GN34 69 aa9.12□□□□□ -0.95
CHRNA4-209ENST00000627000 FAT4Q6V0I7 4981 aa9.1□□□□□ -0.95
CHRNA4-209ENST00000627000 KRTAP12-1P59990 96 aa9.1□□□□□ -0.95
CHRNA4-209ENST00000627000 SPINT4Q6UDR6 99 aa9.08□□□□□ -0.96
CHRNA4-209ENST00000627000 MT1HP80294 61 aa8.92□□□□□ -0.98
CHRNA4-209ENST00000627000 M0R2T5 61 aa8.86□□□□□ -0.99
CHRNA4-209ENST00000627000 C10orf95Q9H7T3 257 aa8.82□□□□□ -1
CHRNA4-209ENST00000627000 KRTAP15-1Q3LI76 137 aa8.74□□□□□ -1.01
CHRNA4-209ENST00000627000 MT2AP02795 61 aa8.66□□□□□ -1.02
CHRNA4-209ENST00000627000 KRTAP9-8Q9BYQ0 159 aa8.65□□□□□ -1.02
CHRNA4-209ENST00000627000 MT1FP04733 61 aa8.64□□□□□ -1.03
CHRNA4-209ENST00000627000 KRTAP19-1Q8IUB9 90 aa8.62□□□□□ -1.03
CHRNA4-209ENST00000627000 SPRR2GQ9BYE4 73 aa8.61□□□□□ -1.03
CHRNA4-209ENST00000627000 NDUFAF8A1L188 74 aa8.59□□□□□ -1.03
CHRNA4-209ENST00000627000 KRTAP10-10P60014 251 aa8.59□□□□□ -1.03
CHRNA4-209ENST00000627000 CAMK2N1Q7Z7J9 78 aa8.59□□□□□ -1.03
CHRNA4-209ENST00000627000 PLAC4Q8WY50 150 aa8.39□□□□□ -1.07
CHRNA4-209ENST00000627000 KRTAP19-8Q3LI54 63 aa8.31□□□□□ -1.08
CHRNA4-209ENST00000627000 KRTAP9-3Q9BYQ3 159 aa8.31□□□□□ -1.08
CHRNA4-209ENST00000627000 LCE2AQ5TA79 106 aaPredicted RBP8.28□□□□□ -1.08
CHRNA4-209ENST00000627000 PP632Q6XCG6 107 aa8.28□□□□□ -1.08
CHRNA4-209ENST00000627000 MT1BP07438 61 aa8.25□□□□□ -1.09
CHRNA4-209ENST00000627000 TNP1P09430 55 aa8.2□□□□□ -1.1
CHRNA4-209ENST00000627000 LUZP6Q538Z0 58 aa8.08□□□□□ -1.12
CHRNA4-209ENST00000627000 LCE2BO14633 110 aa8.06□□□□□ -1.12
CHRNA4-209ENST00000627000 KRTAP10-5P60370 271 aa8.06□□□□□ -1.12
CHRNA4-209ENST00000627000 MT1XP80297 61 aa8.06□□□□□ -1.12
CHRNA4-209ENST00000627000 KRTAP23-1A1A580 65 aa7.95□□□□□ -1.14
CHRNA4-209ENST00000627000 USH2AO75445 5202 aa7.89□□□□□ -1.15
CHRNA4-209ENST00000627000 LCE3AQ5TA76 89 aa7.88□□□□□ -1.15
CHRNA4-209ENST00000627000 A0A0A0MQY5 61 aa7.87□□□□□ -1.15
CHRNA4-209ENST00000627000 KRTAP10-7P60409 375 aaPredicted RBP7.8□□□□□ -1.16
CHRNA4-209ENST00000627000 PRO2289Q9P1D8 64 aa7.8□□□□□ -1.16
CHRNA4-209ENST00000627000 KRTAP10-12P60413 245 aa7.73□□□□□ -1.17
CHRNA4-209ENST00000627000 SPRR5A0A1B0GTR4 108 aa7.69□□□□□ -1.18
CHRNA4-209ENST00000627000 KRTAP8-1Q8IUC2 63 aa7.65□□□□□ -1.18
CHRNA4-209ENST00000627000 SSPOA2VEC9 5147 aa7.52□□□□□ -1.21
CHRNA4-209ENST00000627000 KRTAP12-3P60328 96 aa7.5□□□□□ -1.21
CHRNA4-209ENST00000627000 KMT2DO14686 5537 aa7.5□□□□□ -1.21
CHRNA4-209ENST00000627000 KRTAP4-8A0A0G2JLE6 195 aa7.45□□□□□ -1.22
CHRNA4-209ENST00000627000 KRTAP4-8Q9BYQ9 185 aa7.45□□□□□ -1.22
CHRNA4-209ENST00000627000 FSIP2Q5CZC0 6907 aa7.4□□□□□ -1.23
CHRNA4-209ENST00000627000 KRTAP19-5Q3LI72 72 aa7.39□□□□□ -1.23
CHRNA4-209ENST00000627000 KRTAP19-6Q3LI70 58 aa7.38□□□□□ -1.23
CHRNA4-209ENST00000627000 LCE2DQ5TA82 110 aaPredicted RBP7.3□□□□□ -1.24
CHRNA4-209ENST00000627000 KRTAP19-7Q3SYF9 63 aa7.19□□□□□ -1.26
CHRNA4-209ENST00000627000 INE1O15225 51 aa7.11□□□□□ -1.27
CHRNA4-209ENST00000627000 FCGBPQ9Y6R7 5405 aaPredicted RBP7.11□□□□□ -1.27
CHRNA4-209ENST00000627000 LCE3CQ5T5A8 94 aa7.03□□□□□ -1.28
CHRNA4-209ENST00000627000 MT1EP04732 61 aa7.02□□□□□ -1.29
CHRNA4-209ENST00000627000 MT1LQ93083 61 aa6.93□□□□□ -1.3
CHRNA4-209ENST00000627000 KRTAP9-2Q9BYQ4 174 aa6.91□□□□□ -1.3
CHRNA4-209ENST00000627000 KRTAP4-7Q9BYR0 210 aa6.91□□□□□ -1.3
CHRNA4-209ENST00000627000 MUC12Q9UKN1 5478 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms