RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 RPS29P62273 56 aaKnown RBP5.52□□□□□ -1.53
VPS11-208ENST00000621676 LCA10Q71F78 164 aa5.52□□□□□ -1.53
VPS11-208ENST00000621676 ACYP2P14621 99 aa5.51□□□□□ -1.53
VPS11-208ENST00000621676 A6NED7 52 aa5.5□□□□□ -1.53
VPS11-208ENST00000621676 RPL37P61927 97 aaKnown RBP5.48□□□□□ -1.53
VPS11-208ENST00000621676 Q75L30 129 aa5.48□□□□□ -1.53
VPS11-208ENST00000621676 KRTAP3-1Q9BYR8 98 aa5.47□□□□□ -1.53
VPS11-208ENST00000621676 KTN1-AS1Q86SY8 53 aa5.45□□□□□ -1.54
VPS11-208ENST00000621676 COX6B2Q6YFQ2 88 aa5.42□□□□□ -1.54
VPS11-208ENST00000621676 CDC42SE1Q9NRR8 79 aa5.42□□□□□ -1.54
VPS11-208ENST00000621676 LINC01558Q9Y6Z2 57 aa5.42□□□□□ -1.54
VPS11-208ENST00000621676 A6NN06 94 aa5.42□□□□□ -1.54
VPS11-208ENST00000621676 DMAC1Q96GE9 116 aa5.42□□□□□ -1.54
VPS11-208ENST00000621676 KRTAP4-1Q9BYQ7 146 aa5.4□□□□□ -1.54
VPS11-208ENST00000621676 RBM12B-AS1Q9P1G2 102 aa5.4□□□□□ -1.54
VPS11-208ENST00000621676 A0A1B0GU69 56 aa5.38□□□□□ -1.55
VPS11-208ENST00000621676 KRTAP3-3Q9BYR6 98 aa5.37□□□□□ -1.55
VPS11-208ENST00000621676 KRTAP3-2Q9BYR7 98 aa5.37□□□□□ -1.55
VPS11-208ENST00000621676 TPRXLQ17RH7 258 aa5.36□□□□□ -1.55
VPS11-208ENST00000621676 LCE2DQ5TA82 110 aaPredicted RBP5.35□□□□□ -1.55
VPS11-208ENST00000621676 A0A0D9SG42 100 aa5.34□□□□□ -1.55
VPS11-208ENST00000621676 SPATA8Q6RVD6 105 aa5.33□□□□□ -1.56
VPS11-208ENST00000621676 HMCN2Q8NDA2 5059 aa5.33□□□□□ -1.56
VPS11-208ENST00000621676 LINC01554Q52M75 96 aa5.32□□□□□ -1.56
VPS11-208ENST00000621676 SEC61BP60468 96 aaKnown RBP5.3□□□□□ -1.56
VPS11-208ENST00000621676 S4R3F8 94 aa5.28□□□□□ -1.56
VPS11-208ENST00000621676 FSIP2Q5CZC0 6907 aa5.27□□□□□ -1.57
VPS11-208ENST00000621676 M0R2T5 61 aa5.25□□□□□ -1.57
VPS11-208ENST00000621676 PRAC1Q96KF2 57 aa5.25□□□□□ -1.57
VPS11-208ENST00000621676 P0C880 135 aa5.23□□□□□ -1.57
VPS11-208ENST00000621676 ADM2Q7Z4H4 148 aa5.23□□□□□ -1.57
VPS11-208ENST00000621676 H1FX-AS1Q4G0G2 97 aa5.2□□□□□ -1.58
VPS11-208ENST00000621676 CSAG1Q6PB30 78 aa5.16□□□□□ -1.58
VPS11-208ENST00000621676 A0A1B0GU33 70 aa5.16□□□□□ -1.58
VPS11-208ENST00000621676 CRIPTQ9P021 101 aa5.16□□□□□ -1.58
VPS11-208ENST00000621676 MIR22HGQ0VDD5 57 aa5.15□□□□□ -1.58
VPS11-208ENST00000621676 UQCR11O14957 56 aa5.13□□□□□ -1.59
VPS11-208ENST00000621676 MUC17Q685J3 4493 aa5.13□□□□□ -1.59
VPS11-208ENST00000621676 SPINT4Q6UDR6 99 aa5.13□□□□□ -1.59
VPS11-208ENST00000621676 LORP23490 312 aaPredicted RBP5.1□□□□□ -1.59
VPS11-208ENST00000621676 KRTAP13-4Q3LI77 160 aa5.1□□□□□ -1.59
VPS11-208ENST00000621676 H0YAA0 97 aa5.08□□□□□ -1.6
VPS11-208ENST00000621676 USH2AO75445 5202 aa5.06□□□□□ -1.6
VPS11-208ENST00000621676 M0QZ58 72 aa5.05□□□□□ -1.6
VPS11-208ENST00000621676 KRTAP10-6P60371 365 aaPredicted RBP5.05□□□□□ -1.6
VPS11-208ENST00000621676 R4GN34 69 aa5.03□□□□□ -1.6
VPS11-208ENST00000621676 KRTAP19-2Q3LHN2 52 aa4.92□□□□□ -1.62
VPS11-208ENST00000621676 KRTAP10-10P60014 251 aa4.91□□□□□ -1.62
VPS11-208ENST00000621676 KRTAP12-2P59991 146 aa4.9□□□□□ -1.63
VPS11-208ENST00000621676 LCE2CQ5TA81 110 aa4.89□□□□□ -1.63
VPS11-208ENST00000621676 FLGP20930 4061 aaPredicted RBP4.89□□□□□ -1.63
VPS11-208ENST00000621676 MT1HP80294 61 aa4.87□□□□□ -1.63
VPS11-208ENST00000621676 K7ERS5 55 aa4.86□□□□□ -1.63
VPS11-208ENST00000621676 LCE2BO14633 110 aa4.85□□□□□ -1.63
VPS11-208ENST00000621676 KRTAP25-1Q3LHN0 102 aa4.85□□□□□ -1.63
VPS11-208ENST00000621676 C10orf95Q9H7T3 257 aa4.83□□□□□ -1.64
VPS11-208ENST00000621676 CAMK2N1Q7Z7J9 78 aa4.82□□□□□ -1.64
VPS11-208ENST00000621676 ROMO1P60602 79 aa4.78□□□□□ -1.64
VPS11-208ENST00000621676 KRTAP12-1P59990 96 aa4.77□□□□□ -1.65
VPS11-208ENST00000621676 MT1FP04733 61 aa4.75□□□□□ -1.65
VPS11-208ENST00000621676 KMT2DO14686 5537 aa4.71□□□□□ -1.65
VPS11-208ENST00000621676 MT2AP02795 61 aa4.7□□□□□ -1.66
VPS11-208ENST00000621676 KRTAP9-8Q9BYQ0 159 aa4.65□□□□□ -1.67
VPS11-208ENST00000621676 LCE2AQ5TA79 106 aaPredicted RBP4.61□□□□□ -1.67
VPS11-208ENST00000621676 KRTAP19-1Q8IUB9 90 aa4.6□□□□□ -1.67
VPS11-208ENST00000621676 PLAC4Q8WY50 150 aa4.6□□□□□ -1.67
VPS11-208ENST00000621676 LUZP6Q538Z0 58 aa4.51□□□□□ -1.69
VPS11-208ENST00000621676 KRTAP15-1Q3LI76 137 aa4.47□□□□□ -1.69
VPS11-208ENST00000621676 NDUFAF8A1L188 74 aa4.46□□□□□ -1.69
VPS11-208ENST00000621676 KRTAP9-3Q9BYQ3 159 aa4.44□□□□□ -1.7
VPS11-208ENST00000621676 SPRR2GQ9BYE4 73 aa4.43□□□□□ -1.7
VPS11-208ENST00000621676 SSPOA2VEC9 5147 aa4.42□□□□□ -1.7
VPS11-208ENST00000621676 MT1BP07438 61 aa4.4□□□□□ -1.7
VPS11-208ENST00000621676 DSTQ03001 7570 aaKnown RBP4.39□□□□□ -1.71
VPS11-208ENST00000621676 TNP1P09430 55 aa4.37□□□□□ -1.71
VPS11-208ENST00000621676 KRTAP10-7P60409 375 aaPredicted RBP4.31□□□□□ -1.72
VPS11-208ENST00000621676 KRTAP4-8A0A0G2JLE6 195 aa4.3□□□□□ -1.72
VPS11-208ENST00000621676 KRTAP4-8Q9BYQ9 185 aa4.3□□□□□ -1.72
VPS11-208ENST00000621676 MT1XP80297 61 aa4.29□□□□□ -1.72
VPS11-208ENST00000621676 SYNE2Q8WXH0 6885 aaKnown RBP4.29□□□□□ -1.72
VPS11-208ENST00000621676 KRTAP10-5P60370 271 aa4.28□□□□□ -1.72
VPS11-208ENST00000621676 LCE3AQ5TA76 89 aa4.28□□□□□ -1.72
VPS11-208ENST00000621676 MUC12Q9UKN1 5478 aa4.27□□□□□ -1.73
VPS11-208ENST00000621676 KRTAP23-1A1A580 65 aa4.24□□□□□ -1.73
VPS11-208ENST00000621676 OBSCNQ5VST9 7968 aa4.23□□□□□ -1.73
VPS11-208ENST00000621676 KRTAP19-8Q3LI54 63 aa4.23□□□□□ -1.73
VPS11-208ENST00000621676 FCGBPQ9Y6R7 5405 aaPredicted RBP4.21□□□□□ -1.73
VPS11-208ENST00000621676 MACF1Q9UPN3 7388 aaKnown RBP4.21□□□□□ -1.74
VPS11-208ENST00000621676 PRO2289Q9P1D8 64 aa4.16□□□□□ -1.74
VPS11-208ENST00000621676 KRTAP10-12P60413 245 aa4.16□□□□□ -1.74
VPS11-208ENST00000621676 SYNE1Q8NF91 8797 aaKnown RBP4.08□□□□□ -1.76
VPS11-208ENST00000621676 KRTAP9-2Q9BYQ4 174 aa4.05□□□□□ -1.76
VPS11-208ENST00000621676 KRTAP19-5Q3LI72 72 aa4.03□□□□□ -1.76
VPS11-208ENST00000621676 PP632Q6XCG6 107 aa4.03□□□□□ -1.76
VPS11-208ENST00000621676 KRTAP12-3P60328 96 aa4.02□□□□□ -1.77
VPS11-208ENST00000621676 MDN1Q9NU22 5596 aa4.02□□□□□ -1.77
VPS11-208ENST00000621676 KRTAP4-7Q9BYR0 210 aa4.01□□□□□ -1.77
VPS11-208ENST00000621676 CRCT1Q9UGL9 99 aa3.94□□□□□ -1.78
VPS11-208ENST00000621676 KRTAP8-1Q8IUC2 63 aa3.94□□□□□ -1.78
VPS11-208ENST00000621676 SPRR2FQ96RM1 72 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms