RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 Q5VV11 94 aa2.89□□□□□ -1.95
SHMT1-211ENST00000618902 FLGP20930 4061 aaPredicted RBP2.89□□□□□ -1.95
SHMT1-211ENST00000618902 CDC42SE1Q9NRR8 79 aa2.88□□□□□ -1.95
SHMT1-211ENST00000618902 A6NED7 52 aa2.86□□□□□ -1.95
SHMT1-211ENST00000618902 HRES1P13985 223 aa2.86□□□□□ -1.95
SHMT1-211ENST00000618902 PCOTHQ58A44 107 aa2.86□□□□□ -1.95
SHMT1-211ENST00000618902 DMAC1Q96GE9 116 aa2.86□□□□□ -1.95
SHMT1-211ENST00000618902 C9orf92A6NGG3 77 aa2.85□□□□□ -1.95
SHMT1-211ENST00000618902 IGKV2-30P06310 120 aa2.84□□□□□ -1.95
SHMT1-211ENST00000618902 SPTSSBQ8NFR3 76 aa2.84□□□□□ -1.95
SHMT1-211ENST00000618902 KRTAP4-1Q9BYQ7 146 aa2.84□□□□□ -1.95
SHMT1-211ENST00000618902 A0A0A0MQY5 61 aa2.83□□□□□ -1.96
SHMT1-211ENST00000618902 Q5W150 140 aa2.83□□□□□ -1.96
SHMT1-211ENST00000618902 NOTCH2NLQ7Z3S9 236 aa2.82□□□□□ -1.96
SHMT1-211ENST00000618902 RPL37P61927 97 aaKnown RBP2.81□□□□□ -1.96
SHMT1-211ENST00000618902 LCA10Q71F78 164 aa2.81□□□□□ -1.96
SHMT1-211ENST00000618902 KTN1-AS1Q86SY8 53 aa2.81□□□□□ -1.96
SHMT1-211ENST00000618902 A0A1B0GU69 56 aa2.8□□□□□ -1.96
SHMT1-211ENST00000618902 UQCR11O14957 56 aa2.8□□□□□ -1.96
SHMT1-211ENST00000618902 KRTAP16-1A8MUX0 517 aa2.79□□□□□ -1.96
SHMT1-211ENST00000618902 SPATA8Q6RVD6 105 aa2.79□□□□□ -1.96
SHMT1-211ENST00000618902 IGKV2D-30A0A075B6S6 120 aa2.78□□□□□ -1.96
SHMT1-211ENST00000618902 A6NN06 94 aa2.78□□□□□ -1.96
SHMT1-211ENST00000618902 C7orf65Q6ZTY9 151 aa2.78□□□□□ -1.96
SHMT1-211ENST00000618902 C20orf166-AS1Q96NR2 134 aa2.78□□□□□ -1.96
SHMT1-211ENST00000618902 A8MUU9 505 aa2.76□□□□□ -1.97
SHMT1-211ENST00000618902 KRTAP19-2Q3LHN2 52 aa2.76□□□□□ -1.97
SHMT1-211ENST00000618902 SPINK7P58062 85 aa2.74□□□□□ -1.97
SHMT1-211ENST00000618902 MIR22HGQ0VDD5 57 aa2.74□□□□□ -1.97
SHMT1-211ENST00000618902 KRTAP19-4Q3LI73 84 aa2.74□□□□□ -1.97
SHMT1-211ENST00000618902 KRTAP3-1Q9BYR8 98 aa2.73□□□□□ -1.97
SHMT1-211ENST00000618902 RBM12B-AS1Q9P1G2 102 aa2.73□□□□□ -1.97
SHMT1-211ENST00000618902 COX6B2Q6YFQ2 88 aa2.71□□□□□ -1.98
SHMT1-211ENST00000618902 A8MU10 97 aa2.68□□□□□ -1.98
SHMT1-211ENST00000618902 K7ERS5 55 aa2.68□□□□□ -1.98
SHMT1-211ENST00000618902 MT1HP80294 61 aa2.68□□□□□ -1.98
SHMT1-211ENST00000618902 KRTAP9-2Q9BYQ4 174 aa2.68□□□□□ -1.98
SHMT1-211ENST00000618902 M0R2T5 61 aa2.67□□□□□ -1.98
SHMT1-211ENST00000618902 FSIP2Q5CZC0 6907 aa2.67□□□□□ -1.98
SHMT1-211ENST00000618902 A0A1B0GU33 70 aa2.65□□□□□ -1.99
SHMT1-211ENST00000618902 KRTAP10-6P60371 365 aaPredicted RBP2.64□□□□□ -1.99
SHMT1-211ENST00000618902 LOC100996750A0A140TA64 210 aa2.61□□□□□ -1.99
SHMT1-211ENST00000618902 H1FX-AS1Q4G0G2 97 aa2.61□□□□□ -1.99
SHMT1-211ENST00000618902 LINC01554Q52M75 96 aa2.61□□□□□ -1.99
SHMT1-211ENST00000618902 KRTAP4-6Q9BYQ5 205 aa2.61□□□□□ -1.99
SHMT1-211ENST00000618902 KRTAP9-6A0A140TA67 174 aa2.59□□□□□ -1.99
SHMT1-211ENST00000618902 USH2AO75445 5202 aa2.59□□□□□ -2
SHMT1-211ENST00000618902 H0YAA0 97 aa2.56□□□□□ -2
SHMT1-211ENST00000618902 CRCT1Q9UGL9 99 aa2.56□□□□□ -2
SHMT1-211ENST00000618902 SSPOA2VEC9 5147 aa2.55□□□□□ -2
SHMT1-211ENST00000618902 KRTAP9-8Q9BYQ0 159 aa2.55□□□□□ -2
SHMT1-211ENST00000618902 KRTAP25-1Q3LHN0 102 aa2.54□□□□□ -2
SHMT1-211ENST00000618902 M0QZ58 72 aa2.53□□□□□ -2
SHMT1-211ENST00000618902 CSAG1Q6PB30 78 aa2.53□□□□□ -2
SHMT1-211ENST00000618902 S4R3F8 94 aa2.53□□□□□ -2
SHMT1-211ENST00000618902 MT2AP02795 61 aa2.52□□□□□ -2.01
SHMT1-211ENST00000618902 ROMO1P60602 79 aa2.52□□□□□ -2.01
SHMT1-211ENST00000618902 PRAC1Q96KF2 57 aa2.52□□□□□ -2.01
SHMT1-211ENST00000618902 FCGBPQ9Y6R7 5405 aaPredicted RBP2.51□□□□□ -2.01
SHMT1-211ENST00000618902 MT1FP04733 61 aa2.51□□□□□ -2.01
SHMT1-211ENST00000618902 KRTAP10-10P60014 251 aa2.5□□□□□ -2.01
SHMT1-211ENST00000618902 ADM2Q7Z4H4 148 aa2.5□□□□□ -2.01
SHMT1-211ENST00000618902 KRTAP9-3Q9BYQ3 159 aa2.48□□□□□ -2.01
SHMT1-211ENST00000618902 KRTAP15-1Q3LI76 137 aa2.46□□□□□ -2.02
SHMT1-211ENST00000618902 KRTAP4-8Q9BYQ9 185 aa2.46□□□□□ -2.02
SHMT1-211ENST00000618902 CRIPTQ9P021 101 aa2.46□□□□□ -2.02
SHMT1-211ENST00000618902 KRTAP19-1Q8IUB9 90 aa2.44□□□□□ -2.02
SHMT1-211ENST00000618902 MACF1Q9UPN3 7388 aaKnown RBP2.43□□□□□ -2.02
SHMT1-211ENST00000618902 KRTAP9-7A8MTY7 169 aa2.42□□□□□ -2.02
SHMT1-211ENST00000618902 KRTAP19-6Q3LI70 58 aa2.41□□□□□ -2.02
SHMT1-211ENST00000618902 KRTAP4-12Q9BQ66 201 aa2.4□□□□□ -2.03
SHMT1-211ENST00000618902 A0A0D9SG42 100 aa2.39□□□□□ -2.03
SHMT1-211ENST00000618902 P0C880 135 aa2.39□□□□□ -2.03
SHMT1-211ENST00000618902 KRTAP13-4Q3LI77 160 aa2.39□□□□□ -2.03
SHMT1-211ENST00000618902 LCE3BQ5TA77 95 aa2.39□□□□□ -2.03
SHMT1-211ENST00000618902 LCE4AQ5TA78 99 aa2.39□□□□□ -2.03
SHMT1-211ENST00000618902 SPRR2GQ9BYE4 73 aa2.39□□□□□ -2.03
SHMT1-211ENST00000618902 KRTAP12-1P59990 96 aa2.38□□□□□ -2.03
SHMT1-211ENST00000618902 SYNE2Q8WXH0 6885 aaKnown RBP2.38□□□□□ -2.03
SHMT1-211ENST00000618902 SPINT4Q6UDR6 99 aa2.37□□□□□ -2.03
SHMT1-211ENST00000618902 KRTAP9-4Q9BYQ2 154 aa2.37□□□□□ -2.03
SHMT1-211ENST00000618902 R4GN34 69 aa2.37□□□□□ -2.03
SHMT1-211ENST00000618902 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.36□□□□□ -2.03
SHMT1-211ENST00000618902 KRTAP9-9Q9BYP9 154 aa2.36□□□□□ -2.03
SHMT1-211ENST00000618902 KRTAP12-2P59991 146 aa2.35□□□□□ -2.03
SHMT1-211ENST00000618902 PP632Q6XCG6 107 aa2.35□□□□□ -2.03
SHMT1-211ENST00000618902 MT1BP07438 61 aa2.34□□□□□ -2.03
SHMT1-211ENST00000618902 KRTAP19-8Q3LI54 63 aa2.34□□□□□ -2.03
SHMT1-211ENST00000618902 MUC12Q9UKN1 5478 aa2.33□□□□□ -2.04
SHMT1-211ENST00000618902 MDN1Q9NU22 5596 aa2.33□□□□□ -2.04
SHMT1-211ENST00000618902 CAMK2N1Q7Z7J9 78 aa2.3□□□□□ -2.04
SHMT1-211ENST00000618902 PRO2289Q9P1D8 64 aa2.29□□□□□ -2.04
SHMT1-211ENST00000618902 KRTAP6-3Q3LI67 103 aa2.28□□□□□ -2.04
SHMT1-211ENST00000618902 KMT2DO14686 5537 aa2.28□□□□□ -2.05
SHMT1-211ENST00000618902 KRTAP10-5P60370 271 aa2.27□□□□□ -2.05
SHMT1-211ENST00000618902 PLAC4Q8WY50 150 aa2.26□□□□□ -2.05
SHMT1-211ENST00000618902 LUZP6Q538Z0 58 aa2.25□□□□□ -2.05
SHMT1-211ENST00000618902 LCE5AQ5TCM9 118 aa2.25□□□□□ -2.05
SHMT1-211ENST00000618902 C10orf95Q9H7T3 257 aa2.24□□□□□ -2.05
SHMT1-211ENST00000618902 KRTAP4-8A0A0G2JLE6 195 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms