RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 CAMK2N1Q7Z7J9 78 aa5.82□□□□□ -1.48
FAM3A-221ENST00000612856 R4GN34 69 aa5.82□□□□□ -1.48
FAM3A-221ENST00000612856 P0C880 135 aa5.81□□□□□ -1.48
FAM3A-221ENST00000612856 KIAA1109Q2LD37 5005 aa5.81□□□□□ -1.48
FAM3A-221ENST00000612856 XP32Q5T750 250 aa5.8□□□□□ -1.48
FAM3A-221ENST00000612856 KRTAP16-1A8MUX0 517 aa5.8□□□□□ -1.48
FAM3A-221ENST00000612856 RPL37P61927 97 aaKnown RBP5.79□□□□□ -1.48
FAM3A-221ENST00000612856 FAT2Q9NYQ8 4349 aa5.79□□□□□ -1.48
FAM3A-221ENST00000612856 C20orf166-AS1Q96NR2 134 aa5.79□□□□□ -1.48
FAM3A-221ENST00000612856 ALMS1Q8TCU4 4167 aa5.79□□□□□ -1.48
FAM3A-221ENST00000612856 PKD1P98161 4303 aa5.74□□□□□ -1.49
FAM3A-221ENST00000612856 RYR1P21817 5038 aa5.74□□□□□ -1.49
FAM3A-221ENST00000612856 A0A0A0MQY5 61 aa5.74□□□□□ -1.49
FAM3A-221ENST00000612856 M0QZ58 72 aa5.74□□□□□ -1.49
FAM3A-221ENST00000612856 KRTAP10-8P60410 259 aa5.74□□□□□ -1.49
FAM3A-221ENST00000612856 RPS29P62273 56 aaKnown RBP5.72□□□□□ -1.49
FAM3A-221ENST00000612856 APOBP04114 4563 aaKnown RBP5.7□□□□□ -1.5
FAM3A-221ENST00000612856 LRP1Q07954 4544 aaKnown RBP5.7□□□□□ -1.5
FAM3A-221ENST00000612856 MYCBP2O75592 4640 aa5.69□□□□□ -1.5
FAM3A-221ENST00000612856 RYR2Q92736 4967 aa5.67□□□□□ -1.5
FAM3A-221ENST00000612856 RYR3Q15413 4870 aa5.64□□□□□ -1.51
FAM3A-221ENST00000612856 TPRXLQ17RH7 258 aa5.63□□□□□ -1.51
FAM3A-221ENST00000612856 LUZP6Q538Z0 58 aa5.63□□□□□ -1.51
FAM3A-221ENST00000612856 KRTAP10-4P60372 401 aaPredicted RBP5.61□□□□□ -1.51
FAM3A-221ENST00000612856 FAT3Q8TDW7 4589 aa5.6□□□□□ -1.51
FAM3A-221ENST00000612856 MT1HL1P0DM35 61 aa5.57□□□□□ -1.52
FAM3A-221ENST00000612856 KRTAP3-1Q9BYR8 98 aa5.54□□□□□ -1.52
FAM3A-221ENST00000612856 KRTAP17-1Q9BYP8 105 aa5.52□□□□□ -1.53
FAM3A-221ENST00000612856 KRTAP10-10P60014 251 aa5.51□□□□□ -1.53
FAM3A-221ENST00000612856 PLAC4Q8WY50 150 aa5.48□□□□□ -1.53
FAM3A-221ENST00000612856 KRTAP13-4Q3LI77 160 aa5.47□□□□□ -1.53
FAM3A-221ENST00000612856 EPPK1P58107 5090 aaKnown RBP5.46□□□□□ -1.54
FAM3A-221ENST00000612856 HSPG2P98160 4391 aa5.46□□□□□ -1.54
FAM3A-221ENST00000612856 PCLOQ9Y6V0 5065 aa5.42□□□□□ -1.54
FAM3A-221ENST00000612856 KRTAP15-1Q3LI76 137 aa5.42□□□□□ -1.54
FAM3A-221ENST00000612856 KRTAP12-2P59991 146 aa5.41□□□□□ -1.54
FAM3A-221ENST00000612856 HERC2O95714 4834 aa5.39□□□□□ -1.55
FAM3A-221ENST00000612856 PKHD1L1Q86WI1 4243 aa5.38□□□□□ -1.55
FAM3A-221ENST00000612856 KRTAP10-6P60371 365 aaPredicted RBP5.36□□□□□ -1.55
FAM3A-221ENST00000612856 LRP2P98164 4655 aa5.34□□□□□ -1.55
FAM3A-221ENST00000612856 LPAP08519 4548 aa5.3□□□□□ -1.56
FAM3A-221ENST00000612856 TNXBP22105 4242 aa5.27□□□□□ -1.57
FAM3A-221ENST00000612856 KRTAP12-1P59990 96 aa5.27□□□□□ -1.57
FAM3A-221ENST00000612856 ABCA13Q86UQ4 5058 aa5.25□□□□□ -1.57
FAM3A-221ENST00000612856 LCE2DQ5TA82 110 aaPredicted RBP5.23□□□□□ -1.57
FAM3A-221ENST00000612856 KRTAP3-2Q9BYR7 98 aa5.23□□□□□ -1.57
FAM3A-221ENST00000612856 KRTAP3-3Q9BYR6 98 aa5.2□□□□□ -1.58
FAM3A-221ENST00000612856 FSIP2Q5CZC0 6907 aa5.2□□□□□ -1.58
FAM3A-221ENST00000612856 MUC2Q02817 5179 aa5.1□□□□□ -1.59
FAM3A-221ENST00000612856 BIRC6Q9NR09 4857 aa5.1□□□□□ -1.59
FAM3A-221ENST00000612856 KRTAP4-1Q9BYQ7 146 aa5.07□□□□□ -1.6
FAM3A-221ENST00000612856 TNP1P09430 55 aa5.07□□□□□ -1.6
FAM3A-221ENST00000612856 RNF213Q63HN8 5207 aa5.06□□□□□ -1.6
FAM3A-221ENST00000612856 HERC1Q15751 4861 aa5.06□□□□□ -1.6
FAM3A-221ENST00000612856 UBR4Q5T4S7 5183 aa4.94□□□□□ -1.62
FAM3A-221ENST00000612856 PP632Q6XCG6 107 aa4.92□□□□□ -1.62
FAM3A-221ENST00000612856 LORP23490 312 aaPredicted RBP4.92□□□□□ -1.62
FAM3A-221ENST00000612856 PRO2289Q9P1D8 64 aa4.91□□□□□ -1.62
FAM3A-221ENST00000612856 FAT4Q6V0I7 4981 aa4.88□□□□□ -1.63
FAM3A-221ENST00000612856 MT1HP80294 61 aa4.77□□□□□ -1.65
FAM3A-221ENST00000612856 MUC17Q685J3 4493 aa4.75□□□□□ -1.65
FAM3A-221ENST00000612856 HMCN2Q8NDA2 5059 aa4.73□□□□□ -1.65
FAM3A-221ENST00000612856 MT2AP02795 61 aa4.65□□□□□ -1.66
FAM3A-221ENST00000612856 MT1FP04733 61 aa4.63□□□□□ -1.67
FAM3A-221ENST00000612856 KRTAP19-2Q3LHN2 52 aa4.63□□□□□ -1.67
FAM3A-221ENST00000612856 CRCT1Q9UGL9 99 aa4.63□□□□□ -1.67
FAM3A-221ENST00000612856 OBSCNQ5VST9 7968 aa4.62□□□□□ -1.67
FAM3A-221ENST00000612856 FLGP20930 4061 aaPredicted RBP4.61□□□□□ -1.67
FAM3A-221ENST00000612856 LCE2BO14633 110 aa4.55□□□□□ -1.68
FAM3A-221ENST00000612856 LCE2CQ5TA81 110 aa4.54□□□□□ -1.68
FAM3A-221ENST00000612856 KRTAP10-12P60413 245 aa4.51□□□□□ -1.69
FAM3A-221ENST00000612856 SYNE1Q8NF91 8797 aaKnown RBP4.46□□□□□ -1.7
FAM3A-221ENST00000612856 INE1O15225 51 aa4.45□□□□□ -1.7
FAM3A-221ENST00000612856 LCE3AQ5TA76 89 aa4.42□□□□□ -1.7
FAM3A-221ENST00000612856 KRTAP8-1Q8IUC2 63 aa4.4□□□□□ -1.7
FAM3A-221ENST00000612856 KRTAP19-1Q8IUB9 90 aa4.4□□□□□ -1.71
FAM3A-221ENST00000612856 USH2AO75445 5202 aa4.37□□□□□ -1.71
FAM3A-221ENST00000612856 KRTAP12-3P60328 96 aa4.34□□□□□ -1.71
FAM3A-221ENST00000612856 KRTAP9-8Q9BYQ0 159 aa4.34□□□□□ -1.71
FAM3A-221ENST00000612856 SPRR2GQ9BYE4 73 aa4.33□□□□□ -1.72
FAM3A-221ENST00000612856 DSTQ03001 7570 aaKnown RBP4.32□□□□□ -1.72
FAM3A-221ENST00000612856 LCE2AQ5TA79 106 aaPredicted RBP4.31□□□□□ -1.72
FAM3A-221ENST00000612856 SPRR2FQ96RM1 72 aa4.31□□□□□ -1.72
FAM3A-221ENST00000612856 SPRR5A0A1B0GTR4 108 aa4.3□□□□□ -1.72
FAM3A-221ENST00000612856 KRTAP23-1A1A580 65 aa4.27□□□□□ -1.73
FAM3A-221ENST00000612856 KRTAP4-8A0A0G2JLE6 195 aa4.22□□□□□ -1.73
FAM3A-221ENST00000612856 KRTAP4-8Q9BYQ9 185 aa4.22□□□□□ -1.73
FAM3A-221ENST00000612856 KRTAP10-7P60409 375 aaPredicted RBP4.2□□□□□ -1.74
FAM3A-221ENST00000612856 MT1BP07438 61 aa4.19□□□□□ -1.74
FAM3A-221ENST00000612856 KRTAP9-3Q9BYQ3 159 aa4.18□□□□□ -1.74
FAM3A-221ENST00000612856 KMT2DO14686 5537 aa4.16□□□□□ -1.74
FAM3A-221ENST00000612856 SYNE2Q8WXH0 6885 aaKnown RBP4.15□□□□□ -1.75
FAM3A-221ENST00000612856 KRTAP9-2Q9BYQ4 174 aa4.15□□□□□ -1.75
FAM3A-221ENST00000612856 MT1XP80297 61 aa4.13□□□□□ -1.75
FAM3A-221ENST00000612856 KRTAP10-5P60370 271 aa4.12□□□□□ -1.75
FAM3A-221ENST00000612856 KRTAP19-5Q3LI72 72 aa4.12□□□□□ -1.75
FAM3A-221ENST00000612856 KRTAP19-8Q3LI54 63 aa4.12□□□□□ -1.75
FAM3A-221ENST00000612856 FCGBPQ9Y6R7 5405 aaPredicted RBP4.1□□□□□ -1.75
FAM3A-221ENST00000612856 SPRR2EP22531 72 aa3.98□□□□□ -1.77
FAM3A-221ENST00000612856 SPRR2BP35325 72 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms