RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	BIRC6	Q9NR09	4857 aa		8.51	□□□□□ -1.05
DDX39A-209	ENST00000589318	IGKV2-30	P06310	120 aa		8.5	□□□□□ -1.05
DDX39A-209	ENST00000589318	DMBT1	Q9UGM3	2413 aa	Predicted RBP	8.49	□□□□□ -1.05
DDX39A-209	ENST00000589318	HERC2	O95714	4834 aa		8.45	□□□□□ -1.06
DDX39A-209	ENST00000589318	ABCA13	Q86UQ4	5058 aa		8.43	□□□□□ -1.06
DDX39A-209	ENST00000589318	C9orf92	A6NGG3	77 aa		8.41	□□□□□ -1.06
DDX39A-209	ENST00000589318	IGKV2D-30	A0A075B6S6	120 aa		8.36	□□□□□ -1.07
DDX39A-209	ENST00000589318	KRTAP25-1	Q3LHN0	102 aa		8.35	□□□□□ -1.07
DDX39A-209	ENST00000589318	C20orf166-AS1	Q96NR2	134 aa		8.34	□□□□□ -1.07
DDX39A-209	ENST00000589318		A8MUU9	505 aa		8.33	□□□□□ -1.08
DDX39A-209	ENST00000589318	ROMO1	P60602	79 aa		8.31	□□□□□ -1.08
DDX39A-209	ENST00000589318	XP32	Q5T750	250 aa		8.21	□□□□□ -1.1
DDX39A-209	ENST00000589318		H0YAA0	97 aa		8.17	□□□□□ -1.1
DDX39A-209	ENST00000589318		J3QL48	77 aa		8.17	□□□□□ -1.1
DDX39A-209	ENST00000589318	RPL37	P61927	97 aa	Known RBP	8.16	□□□□□ -1.1
DDX39A-209	ENST00000589318	TPRXL	Q17RH7	258 aa		8.16	□□□□□ -1.1
DDX39A-209	ENST00000589318		K7ERS5	55 aa		8.15	□□□□□ -1.11
DDX39A-209	ENST00000589318	LPA	P08519	4548 aa		8.14	□□□□□ -1.11
DDX39A-209	ENST00000589318	PCLO	Q9Y6V0	5065 aa		8.14	□□□□□ -1.11
DDX39A-209	ENST00000589318		A0A1B0GU33	70 aa		8.13	□□□□□ -1.11
DDX39A-209	ENST00000589318	LRP2	P98164	4655 aa		8.1	□□□□□ -1.11
DDX39A-209	ENST00000589318	H1FX-AS1	Q4G0G2	97 aa		8.09	□□□□□ -1.11
DDX39A-209	ENST00000589318		P0C880	135 aa		7.96	□□□□□ -1.13
DDX39A-209	ENST00000589318	HERC1	Q15751	4861 aa		7.96	□□□□□ -1.14
DDX39A-209	ENST00000589318	KRTAP3-1	Q9BYR8	98 aa		7.93	□□□□□ -1.14
DDX39A-209	ENST00000589318	HMCN2	Q8NDA2	5059 aa		7.88	□□□□□ -1.15
DDX39A-209	ENST00000589318	COX6B2	Q6YFQ2	88 aa		7.86	□□□□□ -1.15
DDX39A-209	ENST00000589318	MUC17	Q685J3	4493 aa		7.84	□□□□□ -1.16
DDX39A-209	ENST00000589318	SEC61B	P60468	96 aa	Known RBP	7.83	□□□□□ -1.16
DDX39A-209	ENST00000589318	SPINT4	Q6UDR6	99 aa		7.83	□□□□□ -1.16
DDX39A-209	ENST00000589318	KRTAP4-1	Q9BYQ7	146 aa		7.78	□□□□□ -1.16
DDX39A-209	ENST00000589318	CRIPT	Q9P021	101 aa		7.78	□□□□□ -1.16
DDX39A-209	ENST00000589318		A0A0A0MQY5	61 aa		7.72	□□□□□ -1.17
DDX39A-209	ENST00000589318	KRTAP15-1	Q3LI76	137 aa		7.72	□□□□□ -1.17
DDX39A-209	ENST00000589318	NDUFAF8	A1L188	74 aa		7.64	□□□□□ -1.19
DDX39A-209	ENST00000589318	MUC2	Q02817	5179 aa		7.64	□□□□□ -1.19
DDX39A-209	ENST00000589318	KRTAP3-3	Q9BYR6	98 aa		7.64	□□□□□ -1.19
DDX39A-209	ENST00000589318	KRTAP19-2	Q3LHN2	52 aa		7.6	□□□□□ -1.19
DDX39A-209	ENST00000589318		S4R3F8	94 aa		7.6	□□□□□ -1.19
DDX39A-209	ENST00000589318	KRTAP10-6	P60371	365 aa	Predicted RBP	7.59	□□□□□ -1.19
DDX39A-209	ENST00000589318	UBR4	Q5T4S7	5183 aa		7.53	□□□□□ -1.2
DDX39A-209	ENST00000589318	KRTAP13-4	Q3LI77	160 aa		7.5	□□□□□ -1.21
DDX39A-209	ENST00000589318		A0A0D9SG42	100 aa		7.5	□□□□□ -1.21
DDX39A-209	ENST00000589318	RNF213	Q63HN8	5207 aa		7.49	□□□□□ -1.21
DDX39A-209	ENST00000589318	KRTAP3-2	Q9BYR7	98 aa		7.48	□□□□□ -1.21
DDX39A-209	ENST00000589318	C10orf95	Q9H7T3	257 aa		7.48	□□□□□ -1.21
DDX39A-209	ENST00000589318	FLG	P20930	4061 aa	Predicted RBP	7.43	□□□□□ -1.22
DDX39A-209	ENST00000589318	LCE2C	Q5TA81	110 aa		7.37	□□□□□ -1.23
DDX39A-209	ENST00000589318	KRTAP12-2	P59991	146 aa		7.35	□□□□□ -1.23
DDX39A-209	ENST00000589318	KRTAP12-1	P59990	96 aa		7.33	□□□□□ -1.24
DDX39A-209	ENST00000589318	FAT4	Q6V0I7	4981 aa		7.31	□□□□□ -1.24
DDX39A-209	ENST00000589318		M0QZ58	72 aa		7.3	□□□□□ -1.24
DDX39A-209	ENST00000589318	LUZP6	Q538Z0	58 aa		7.23	□□□□□ -1.25
DDX39A-209	ENST00000589318	MT1H	P80294	61 aa		7.19	□□□□□ -1.26
DDX39A-209	ENST00000589318	PLAC4	Q8WY50	150 aa		7.14	□□□□□ -1.27
DDX39A-209	ENST00000589318	LOR	P23490	312 aa	Predicted RBP	7.1	□□□□□ -1.27
DDX39A-209	ENST00000589318		M0R2T5	61 aa		7.05	□□□□□ -1.28
DDX39A-209	ENST00000589318	PP632	Q6XCG6	107 aa		7	□□□□□ -1.29
DDX39A-209	ENST00000589318		R4GN34	69 aa		6.99	□□□□□ -1.29
DDX39A-209	ENST00000589318	KRTAP9-8	Q9BYQ0	159 aa		6.95	□□□□□ -1.3
DDX39A-209	ENST00000589318	MT2A	P02795	61 aa		6.92	□□□□□ -1.3
DDX39A-209	ENST00000589318	MT1F	P04733	61 aa		6.9	□□□□□ -1.3
DDX39A-209	ENST00000589318	LCE2A	Q5TA79	106 aa	Predicted RBP	6.88	□□□□□ -1.31
DDX39A-209	ENST00000589318	KRTAP10-10	P60014	251 aa		6.82	□□□□□ -1.32
DDX39A-209	ENST00000589318	KRTAP19-1	Q8IUB9	90 aa		6.81	□□□□□ -1.32
DDX39A-209	ENST00000589318	SPRR2G	Q9BYE4	73 aa		6.81	□□□□□ -1.32
DDX39A-209	ENST00000589318	KRTAP23-1	A1A580	65 aa		6.7	□□□□□ -1.34
DDX39A-209	ENST00000589318	KRTAP9-3	Q9BYQ3	159 aa		6.7	□□□□□ -1.34
DDX39A-209	ENST00000589318	SPRR5	A0A1B0GTR4	108 aa		6.63	□□□□□ -1.35
DDX39A-209	ENST00000589318	KRTAP19-8	Q3LI54	63 aa		6.62	□□□□□ -1.35
DDX39A-209	ENST00000589318	CAMK2N1	Q7Z7J9	78 aa		6.61	□□□□□ -1.35
DDX39A-209	ENST00000589318	MT1B	P07438	61 aa		6.55	□□□□□ -1.36
DDX39A-209	ENST00000589318	LCE2B	O14633	110 aa		6.5	□□□□□ -1.37
DDX39A-209	ENST00000589318	TNP1	P09430	55 aa		6.48	□□□□□ -1.37
DDX39A-209	ENST00000589318	PRO2289	Q9P1D8	64 aa		6.48	□□□□□ -1.37
DDX39A-209	ENST00000589318	INE1	O15225	51 aa		6.38	□□□□□ -1.39
DDX39A-209	ENST00000589318	USH2A	O75445	5202 aa		6.38	□□□□□ -1.39
DDX39A-209	ENST00000589318	MT1X	P80297	61 aa		6.35	□□□□□ -1.39
DDX39A-209	ENST00000589318	KRTAP10-5	P60370	271 aa		6.35	□□□□□ -1.39
DDX39A-209	ENST00000589318	LCE2D	Q5TA82	110 aa	Predicted RBP	6.17	□□□□□ -1.42
DDX39A-209	ENST00000589318	SSPO	A2VEC9	5147 aa		6.14	□□□□□ -1.43
DDX39A-209	ENST00000589318	KRTAP10-7	P60409	375 aa	Predicted RBP	6.11	□□□□□ -1.43
DDX39A-209	ENST00000589318	KRTAP19-6	Q3LI70	58 aa		6.06	□□□□□ -1.44
DDX39A-209	ENST00000589318	FSIP2	Q5CZC0	6907 aa		6.05	□□□□□ -1.44
DDX39A-209	ENST00000589318	LCE3A	Q5TA76	89 aa		6.03	□□□□□ -1.44
DDX39A-209	ENST00000589318	KRTAP10-12	P60413	245 aa		6.01	□□□□□ -1.45
DDX39A-209	ENST00000589318	KRTAP8-1	Q8IUC2	63 aa		5.92	□□□□□ -1.46
DDX39A-209	ENST00000589318	KMT2D	O14686	5537 aa		5.92	□□□□□ -1.46
DDX39A-209	ENST00000589318	KRTAP9-2	Q9BYQ4	174 aa		5.91	□□□□□ -1.46
DDX39A-209	ENST00000589318	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	5.88	□□□□□ -1.47
DDX39A-209	ENST00000589318	KRTAP4-8	A0A0G2JLE6	195 aa		5.86	□□□□□ -1.47
DDX39A-209	ENST00000589318	KRTAP4-8	Q9BYQ9	185 aa		5.86	□□□□□ -1.47
DDX39A-209	ENST00000589318	KRTAP12-3	P60328	96 aa		5.76	□□□□□ -1.49
DDX39A-209	ENST00000589318	KRTAP19-5	Q3LI72	72 aa		5.74	□□□□□ -1.49
DDX39A-209	ENST00000589318	CRCT1	Q9UGL9	99 aa		5.7	□□□□□ -1.5
DDX39A-209	ENST00000589318	KRTAP19-7	Q3SYF9	63 aa		5.68	□□□□□ -1.5
DDX39A-209	ENST00000589318	KRTAP9-6	A0A140TA67	174 aa		5.57	□□□□□ -1.52
DDX39A-209	ENST00000589318	MT1E	P04732	61 aa		5.55	□□□□□ -1.52
DDX39A-209	ENST00000589318	MACF1	Q9UPN3	7388 aa	Known RBP	5.55	□□□□□ -1.52
DDX39A-209	ENST00000589318	MT1L	Q93083	61 aa		5.45	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms