RNA–Protein interactions for RNA: ENST00000588815.5

CAPNS1-206, Transcript of calpain small subunit 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CAPNS1, Length 1,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPNS1-206ENST00000588815 SPTSSBQ8NFR3 76 aa15.3■□□□□ 0.04
CAPNS1-206ENST00000588815 LCA10Q71F78 164 aa15.27■□□□□ 0.04
CAPNS1-206ENST00000588815 LCE2CQ5TA81 110 aa15.21■□□□□ 0.03
CAPNS1-206ENST00000588815 KRTAP3-3Q9BYR6 98 aa15.18■□□□□ 0.02
CAPNS1-206ENST00000588815 SMIM26A0A096LP01 95 aa15.13■□□□□ 0.01
CAPNS1-206ENST00000588815 FLGP20930 4061 aaPredicted RBP15.1■□□□□ 0.01
CAPNS1-206ENST00000588815 CSAG1Q6PB30 78 aa15.09■□□□□ 0.01
CAPNS1-206ENST00000588815 V9GYY9 64 aa14.95□□□□□ -0.02
CAPNS1-206ENST00000588815 MT1HP80294 61 aa14.95□□□□□ -0.02
CAPNS1-206ENST00000588815 Q1T7F1 81 aa14.91□□□□□ -0.02
CAPNS1-206ENST00000588815 LINC01558Q9Y6Z2 57 aa14.89□□□□□ -0.03
CAPNS1-206ENST00000588815 FAT4Q6V0I7 4981 aa14.89□□□□□ -0.03
CAPNS1-206ENST00000588815 M0R2T5 61 aa14.8□□□□□ -0.04
CAPNS1-206ENST00000588815 H0YAA0 97 aa14.79□□□□□ -0.04
CAPNS1-206ENST00000588815 SEC61GP60059 68 aa14.78□□□□□ -0.04
CAPNS1-206ENST00000588815 A0A1B0GU69 56 aa14.74□□□□□ -0.05
CAPNS1-206ENST00000588815 PRR15LQ9BU68 103 aa14.73□□□□□ -0.05
CAPNS1-206ENST00000588815 ADM2Q7Z4H4 148 aa14.61□□□□□ -0.07
CAPNS1-206ENST00000588815 LCE2AQ5TA79 106 aaPredicted RBP14.58□□□□□ -0.08
CAPNS1-206ENST00000588815 KRTAP3-2Q9BYR7 98 aa14.57□□□□□ -0.08
CAPNS1-206ENST00000588815 PSPHP1O15172 72 aa14.55□□□□□ -0.08
CAPNS1-206ENST00000588815 KRTAP10-6P60371 365 aaPredicted RBP14.54□□□□□ -0.08
CAPNS1-206ENST00000588815 Q5VV11 94 aa14.46□□□□□ -0.09
CAPNS1-206ENST00000588815 P0C880 135 aa14.45□□□□□ -0.1
CAPNS1-206ENST00000588815 LORP23490 312 aaPredicted RBP14.38□□□□□ -0.11
CAPNS1-206ENST00000588815 A0A1B0GU33 70 aa14.37□□□□□ -0.11
CAPNS1-206ENST00000588815 KRTAP9-8Q9BYQ0 159 aa14.36□□□□□ -0.11
CAPNS1-206ENST00000588815 UQCR11O14957 56 aa14.28□□□□□ -0.12
CAPNS1-206ENST00000588815 MT2AP02795 61 aa14.28□□□□□ -0.12
CAPNS1-206ENST00000588815 CRIPTQ9P021 101 aa14.27□□□□□ -0.12
CAPNS1-206ENST00000588815 M0QZ58 72 aa14.22□□□□□ -0.13
CAPNS1-206ENST00000588815 KRTAP10-10P60014 251 aa14.18□□□□□ -0.14
CAPNS1-206ENST00000588815 A6NED7 52 aa14.17□□□□□ -0.14
CAPNS1-206ENST00000588815 MT1FP04733 61 aa14.17□□□□□ -0.14
CAPNS1-206ENST00000588815 R4GN34 69 aa14.17□□□□□ -0.14
CAPNS1-206ENST00000588815 MIR22HGQ0VDD5 57 aa14.05□□□□□ -0.16
CAPNS1-206ENST00000588815 KRTAP13-4Q3LI77 160 aa14.05□□□□□ -0.16
CAPNS1-206ENST00000588815 SPATA8Q6RVD6 105 aa14.05□□□□□ -0.16
CAPNS1-206ENST00000588815 SPRR2GQ9BYE4 73 aa13.94□□□□□ -0.18
CAPNS1-206ENST00000588815 SVIPQ8NHG7 77 aa13.93□□□□□ -0.18
CAPNS1-206ENST00000588815 CDC42SE1Q9NRR8 79 aa13.92□□□□□ -0.18
CAPNS1-206ENST00000588815 KRTAP19-1Q8IUB9 90 aa13.86□□□□□ -0.19
CAPNS1-206ENST00000588815 KRTAP9-3Q9BYQ3 159 aa13.86□□□□□ -0.19
CAPNS1-206ENST00000588815 A8MU10 97 aa13.79□□□□□ -0.2
CAPNS1-206ENST00000588815 LINC01554Q52M75 96 aa13.79□□□□□ -0.2
CAPNS1-206ENST00000588815 BRK1Q8WUW1 75 aa13.78□□□□□ -0.2
CAPNS1-206ENST00000588815 A0A0D9SG42 100 aa13.77□□□□□ -0.21
CAPNS1-206ENST00000588815 A6NN06 94 aa13.72□□□□□ -0.21
CAPNS1-206ENST00000588815 KRTAP19-8Q3LI54 63 aa13.62□□□□□ -0.23
CAPNS1-206ENST00000588815 KRTAP12-1P59990 96 aa13.57□□□□□ -0.24
CAPNS1-206ENST00000588815 K7ERS5 55 aa13.55□□□□□ -0.24
CAPNS1-206ENST00000588815 SPINT4Q6UDR6 99 aa13.51□□□□□ -0.25
CAPNS1-206ENST00000588815 KRTAP12-2P59991 146 aa13.48□□□□□ -0.25
CAPNS1-206ENST00000588815 LCE2BO14633 110 aa13.47□□□□□ -0.25
CAPNS1-206ENST00000588815 PLAC4Q8WY50 150 aa13.44□□□□□ -0.26
CAPNS1-206ENST00000588815 LCE2DQ5TA82 110 aaPredicted RBP13.4□□□□□ -0.26
CAPNS1-206ENST00000588815 PRO0628Q9UI54 55 aa13.4□□□□□ -0.26
CAPNS1-206ENST00000588815 MT1BP07438 61 aa13.38□□□□□ -0.27
CAPNS1-206ENST00000588815 CAMK2N1Q7Z7J9 78 aa13.23□□□□□ -0.29
CAPNS1-206ENST00000588815 PMAIP1Q13794 54 aa13.06□□□□□ -0.32
CAPNS1-206ENST00000588815 USH2AO75445 5202 aa13.01□□□□□ -0.33
CAPNS1-206ENST00000588815 PRO2289Q9P1D8 64 aa12.93□□□□□ -0.34
CAPNS1-206ENST00000588815 KRTAP9-2Q9BYQ4 174 aa12.92□□□□□ -0.34
CAPNS1-206ENST00000588815 MT1XP80297 61 aa12.89□□□□□ -0.35
CAPNS1-206ENST00000588815 ROMO1P60602 79 aa12.87□□□□□ -0.35
CAPNS1-206ENST00000588815 KRTAP10-5P60370 271 aa12.86□□□□□ -0.35
CAPNS1-206ENST00000588815 C10orf95Q9H7T3 257 aa12.83□□□□□ -0.36
CAPNS1-206ENST00000588815 KRTAP19-6Q3LI70 58 aa12.81□□□□□ -0.36
CAPNS1-206ENST00000588815 SSPOA2VEC9 5147 aa12.66□□□□□ -0.38
CAPNS1-206ENST00000588815 TNP1P09430 55 aa12.59□□□□□ -0.39
CAPNS1-206ENST00000588815 KRTAP25-1Q3LHN0 102 aa12.57□□□□□ -0.4
CAPNS1-206ENST00000588815 FSIP2Q5CZC0 6907 aa12.52□□□□□ -0.41
CAPNS1-206ENST00000588815 CRCT1Q9UGL9 99 aa12.46□□□□□ -0.42
CAPNS1-206ENST00000588815 KTN1-AS1Q86SY8 53 aa12.45□□□□□ -0.42
CAPNS1-206ENST00000588815 KRTAP10-7P60409 375 aaPredicted RBP12.32□□□□□ -0.44
CAPNS1-206ENST00000588815 KRTAP10-12P60413 245 aa12.28□□□□□ -0.44
CAPNS1-206ENST00000588815 KRTAP23-1A1A580 65 aa12.21□□□□□ -0.45
CAPNS1-206ENST00000588815 FCGBPQ9Y6R7 5405 aaPredicted RBP12.18□□□□□ -0.46
CAPNS1-206ENST00000588815 PRAC1Q96KF2 57 aa12.14□□□□□ -0.47
CAPNS1-206ENST00000588815 PP632Q6XCG6 107 aa12.13□□□□□ -0.47
CAPNS1-206ENST00000588815 KRTAP9-6A0A140TA67 174 aa12.02□□□□□ -0.48
CAPNS1-206ENST00000588815 LCE3AQ5TA76 89 aa12□□□□□ -0.49
CAPNS1-206ENST00000588815 KRTAP4-8A0A0G2JLE6 195 aa11.87□□□□□ -0.51
CAPNS1-206ENST00000588815 KRTAP4-8Q9BYQ9 185 aa11.87□□□□□ -0.51
CAPNS1-206ENST00000588815 KRTAP8-1Q8IUC2 63 aa11.83□□□□□ -0.52
CAPNS1-206ENST00000588815 KMT2DO14686 5537 aa11.7□□□□□ -0.54
CAPNS1-206ENST00000588815 KRTAP12-3P60328 96 aa11.57□□□□□ -0.56
CAPNS1-206ENST00000588815 KRTAP19-5Q3LI72 72 aa11.57□□□□□ -0.56
CAPNS1-206ENST00000588815 MACF1Q9UPN3 7388 aaKnown RBP11.54□□□□□ -0.56
CAPNS1-206ENST00000588815 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.52□□□□□ -0.56
CAPNS1-206ENST00000588815 KRTAP19-7Q3SYF9 63 aa11.51□□□□□ -0.57
CAPNS1-206ENST00000588815 MT1EP04732 61 aa11.33□□□□□ -0.6
CAPNS1-206ENST00000588815 KRTAP5-9P26371 169 aa11.33□□□□□ -0.6
CAPNS1-206ENST00000588815 KRTAP15-1Q3LI76 137 aa11.3□□□□□ -0.6
CAPNS1-206ENST00000588815 SPRR2FQ96RM1 72 aa11.29□□□□□ -0.6
CAPNS1-206ENST00000588815 KRTAP6-3Q3LI67 103 aa11.25□□□□□ -0.61
CAPNS1-206ENST00000588815 SYNE2Q8WXH0 6885 aaKnown RBP11.15□□□□□ -0.62
CAPNS1-206ENST00000588815 KRTAP19-4Q3LI73 84 aa11.11□□□□□ -0.63
CAPNS1-206ENST00000588815 MT1LQ93083 61 aa11.07□□□□□ -0.64
CAPNS1-206ENST00000588815 KRTAP9-7A8MTY7 169 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms