RNA–Protein interactions for RNA: ENST00000587730.5

DDX39A-206, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,813 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-206ENST00000587730 H0YAA0 97 aa9.92□□□□□ -0.82
DDX39A-206ENST00000587730 H1FX-AS1Q4G0G2 97 aa9.92□□□□□ -0.82
DDX39A-206ENST00000587730 COX6B2Q6YFQ2 88 aa9.92□□□□□ -0.82
DDX39A-206ENST00000587730 FAT1Q14517 4588 aa9.89□□□□□ -0.83
DDX39A-206ENST00000587730 PKHD1L1Q86WI1 4243 aa9.85□□□□□ -0.83
DDX39A-206ENST00000587730 CSAG1Q6PB30 78 aa9.84□□□□□ -0.83
DDX39A-206ENST00000587730 K7ERS5 55 aa9.82□□□□□ -0.84
DDX39A-206ENST00000587730 KRTAP4-5Q9BYR2 181 aa9.8□□□□□ -0.84
DDX39A-206ENST00000587730 ABCA13Q86UQ4 5058 aa9.76□□□□□ -0.85
DDX39A-206ENST00000587730 RPL37P61927 97 aaKnown RBP9.67□□□□□ -0.86
DDX39A-206ENST00000587730 KRTAP25-1Q3LHN0 102 aa9.66□□□□□ -0.86
DDX39A-206ENST00000587730 Q5VSD8 79 aa9.66□□□□□ -0.86
DDX39A-206ENST00000587730 KRTAP10-8P60410 259 aa9.65□□□□□ -0.86
DDX39A-206ENST00000587730 FLG2Q5D862 2391 aaPredicted RBP9.61□□□□□ -0.87
DDX39A-206ENST00000587730 SEC61BP60468 96 aaKnown RBP9.59□□□□□ -0.87
DDX39A-206ENST00000587730 S4R3F8 94 aa9.55□□□□□ -0.88
DDX39A-206ENST00000587730 KRTAP3-3Q9BYR6 98 aa9.54□□□□□ -0.88
DDX39A-206ENST00000587730 MYCBP2O75592 4640 aa9.53□□□□□ -0.88
DDX39A-206ENST00000587730 KRTAP10-6P60371 365 aaPredicted RBP9.52□□□□□ -0.89
DDX39A-206ENST00000587730 XP32Q5T750 250 aa9.52□□□□□ -0.89
DDX39A-206ENST00000587730 LRP1Q07954 4544 aaKnown RBP9.52□□□□□ -0.89
DDX39A-206ENST00000587730 ROMO1P60602 79 aa9.51□□□□□ -0.89
DDX39A-206ENST00000587730 FAT3Q8TDW7 4589 aa9.47□□□□□ -0.89
DDX39A-206ENST00000587730 DMBT1Q9UGM3 2413 aaPredicted RBP9.46□□□□□ -0.9
DDX39A-206ENST00000587730 KRTAP3-2Q9BYR7 98 aa9.45□□□□□ -0.9
DDX39A-206ENST00000587730 HERC1Q15751 4861 aa9.44□□□□□ -0.9
DDX39A-206ENST00000587730 TNXBP22105 4242 aa9.4□□□□□ -0.9
DDX39A-206ENST00000587730 KRTAP13-4Q3LI77 160 aa9.35□□□□□ -0.91
DDX39A-206ENST00000587730 A0A0D9SG42 100 aa9.31□□□□□ -0.92
DDX39A-206ENST00000587730 P0C880 135 aa9.26□□□□□ -0.93
DDX39A-206ENST00000587730 TPRXLQ17RH7 258 aa9.24□□□□□ -0.93
DDX39A-206ENST00000587730 MT1HL1P0DM35 61 aa9.23□□□□□ -0.93
DDX39A-206ENST00000587730 M0QZ58 72 aa9.22□□□□□ -0.93
DDX39A-206ENST00000587730 CRIPTQ9P021 101 aa9.21□□□□□ -0.94
DDX39A-206ENST00000587730 KRTAP12-1P59990 96 aa9.1□□□□□ -0.95
DDX39A-206ENST00000587730 KRTAP12-2P59991 146 aa9.1□□□□□ -0.95
DDX39A-206ENST00000587730 SPINT4Q6UDR6 99 aa9.05□□□□□ -0.96
DDX39A-206ENST00000587730 HMCN2Q8NDA2 5059 aa8.99□□□□□ -0.97
DDX39A-206ENST00000587730 C10orf95Q9H7T3 257 aa8.92□□□□□ -0.98
DDX39A-206ENST00000587730 UBR4Q5T4S7 5183 aa8.91□□□□□ -0.98
DDX39A-206ENST00000587730 LPAP08519 4548 aa8.86□□□□□ -0.99
DDX39A-206ENST00000587730 R4GN34 69 aa8.86□□□□□ -0.99
DDX39A-206ENST00000587730 KRTAP15-1Q3LI76 137 aa8.79□□□□□ -1
DDX39A-206ENST00000587730 LRP2P98164 4655 aa8.77□□□□□ -1.01
DDX39A-206ENST00000587730 RNF213Q63HN8 5207 aa8.63□□□□□ -1.03
DDX39A-206ENST00000587730 LUZP6Q538Z0 58 aa8.56□□□□□ -1.04
DDX39A-206ENST00000587730 NDUFAF8A1L188 74 aa8.54□□□□□ -1.04
DDX39A-206ENST00000587730 PP632Q6XCG6 107 aa8.54□□□□□ -1.04
DDX39A-206ENST00000587730 LORP23490 312 aaPredicted RBP8.5□□□□□ -1.05
DDX39A-206ENST00000587730 KRTAP4-1Q9BYQ7 146 aa8.5□□□□□ -1.05
DDX39A-206ENST00000587730 MUC17Q685J3 4493 aa8.48□□□□□ -1.05
DDX39A-206ENST00000587730 MUC2Q02817 5179 aa8.47□□□□□ -1.05
DDX39A-206ENST00000587730 KRTAP19-2Q3LHN2 52 aa8.46□□□□□ -1.06
DDX39A-206ENST00000587730 KRTAP23-1A1A580 65 aa8.45□□□□□ -1.06
DDX39A-206ENST00000587730 CAMK2N1Q7Z7J9 78 aa8.43□□□□□ -1.06
DDX39A-206ENST00000587730 PLAC4Q8WY50 150 aa8.4□□□□□ -1.06
DDX39A-206ENST00000587730 TNP1P09430 55 aa8.18□□□□□ -1.1
DDX39A-206ENST00000587730 FLGP20930 4061 aaPredicted RBP8.12□□□□□ -1.11
DDX39A-206ENST00000587730 FAT4Q6V0I7 4981 aa8.1□□□□□ -1.11
DDX39A-206ENST00000587730 LCE2AQ5TA79 106 aaPredicted RBP8.06□□□□□ -1.12
DDX39A-206ENST00000587730 KRTAP9-2Q9BYQ4 174 aa8.06□□□□□ -1.12
DDX39A-206ENST00000587730 SPRR2GQ9BYE4 73 aa7.98□□□□□ -1.13
DDX39A-206ENST00000587730 LCE2CQ5TA81 110 aa7.94□□□□□ -1.14
DDX39A-206ENST00000587730 SPRR5A0A1B0GTR4 108 aa7.87□□□□□ -1.15
DDX39A-206ENST00000587730 KRTAP9-6A0A140TA67 174 aa7.84□□□□□ -1.15
DDX39A-206ENST00000587730 KRTAP19-1Q8IUB9 90 aa7.81□□□□□ -1.16
DDX39A-206ENST00000587730 MT1HP80294 61 aa7.8□□□□□ -1.16
DDX39A-206ENST00000587730 M0R2T5 61 aa7.77□□□□□ -1.17
DDX39A-206ENST00000587730 LCE2DQ5TA82 110 aaPredicted RBP7.68□□□□□ -1.18
DDX39A-206ENST00000587730 FSIP2Q5CZC0 6907 aa7.63□□□□□ -1.19
DDX39A-206ENST00000587730 KRTAP10-10P60014 251 aa7.63□□□□□ -1.19
DDX39A-206ENST00000587730 MT2AP02795 61 aa7.62□□□□□ -1.19
DDX39A-206ENST00000587730 KRTAP19-8Q3LI54 63 aa7.62□□□□□ -1.19
DDX39A-206ENST00000587730 MT1FP04733 61 aa7.58□□□□□ -1.2
DDX39A-206ENST00000587730 LCE3AQ5TA76 89 aa7.58□□□□□ -1.2
DDX39A-206ENST00000587730 CRCT1Q9UGL9 99 aa7.58□□□□□ -1.2
DDX39A-206ENST00000587730 KRTAP9-8Q9BYQ0 159 aa7.54□□□□□ -1.2
DDX39A-206ENST00000587730 KRTAP8-1Q8IUC2 63 aa7.53□□□□□ -1.2
DDX39A-206ENST00000587730 MT1BP07438 61 aa7.39□□□□□ -1.23
DDX39A-206ENST00000587730 KRTAP10-5P60370 271 aa7.38□□□□□ -1.23
DDX39A-206ENST00000587730 PRO2289Q9P1D8 64 aa7.38□□□□□ -1.23
DDX39A-206ENST00000587730 MT1XP80297 61 aa7.37□□□□□ -1.23
DDX39A-206ENST00000587730 KRTAP10-12P60413 245 aa7.34□□□□□ -1.23
DDX39A-206ENST00000587730 KRTAP12-3P60328 96 aa7.3□□□□□ -1.24
DDX39A-206ENST00000587730 KRTAP9-3Q9BYQ3 159 aa7.23□□□□□ -1.25
DDX39A-206ENST00000587730 INE1O15225 51 aa7.14□□□□□ -1.27
DDX39A-206ENST00000587730 USH2AO75445 5202 aa7.13□□□□□ -1.27
DDX39A-206ENST00000587730 KRTAP10-7P60409 375 aaPredicted RBP7.11□□□□□ -1.27
DDX39A-206ENST00000587730 LCE2BO14633 110 aa7.09□□□□□ -1.27
DDX39A-206ENST00000587730 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.06□□□□□ -1.28
DDX39A-206ENST00000587730 SSPOA2VEC9 5147 aa7.04□□□□□ -1.28
DDX39A-206ENST00000587730 KRTAP9-7A8MTY7 169 aa7.04□□□□□ -1.28
DDX39A-206ENST00000587730 FCGBPQ9Y6R7 5405 aaPredicted RBP6.93□□□□□ -1.3
DDX39A-206ENST00000587730 LCE3CQ5T5A8 94 aa6.88□□□□□ -1.31
DDX39A-206ENST00000587730 KRTAP19-5Q3LI72 72 aa6.87□□□□□ -1.31
DDX39A-206ENST00000587730 KRTAP19-4Q3LI73 84 aa6.84□□□□□ -1.31
DDX39A-206ENST00000587730 MACF1Q9UPN3 7388 aaKnown RBP6.76□□□□□ -1.33
DDX39A-206ENST00000587730 SYNE2Q8WXH0 6885 aaKnown RBP6.74□□□□□ -1.33
DDX39A-206ENST00000587730 KRTAP19-6Q3LI70 58 aa6.73□□□□□ -1.33
DDX39A-206ENST00000587730 KRTAP4-8A0A0G2JLE6 195 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms