RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 ACANP16112 2415 aa1.71□□□□□ -2.14
COPS3-216ENST00000579716 FCGBPQ9Y6R7 5405 aaPredicted RBP1.71□□□□□ -2.14
COPS3-216ENST00000579716 CELSR3Q9NYQ7 3312 aa1.7□□□□□ -2.14
COPS3-216ENST00000579716 LRBAP50851 2863 aa1.7□□□□□ -2.14
COPS3-216ENST00000579716 FAT2Q9NYQ8 4349 aa1.7□□□□□ -2.14
COPS3-216ENST00000579716 DNAH7Q8WXX0 4024 aa1.69□□□□□ -2.14
COPS3-216ENST00000579716 DNAH2Q9P225 4427 aa1.69□□□□□ -2.14
COPS3-216ENST00000579716 ANK3Q12955 4377 aaKnown RBP1.69□□□□□ -2.14
COPS3-216ENST00000579716 PCLOQ9Y6V0 5065 aa1.69□□□□□ -2.14
COPS3-216ENST00000579716 TACC2O95359 2948 aa1.69□□□□□ -2.14
COPS3-216ENST00000579716 DMXL2Q8TDJ6 3036 aa1.68□□□□□ -2.14
COPS3-216ENST00000579716 PKHD1L1Q86WI1 4243 aa1.68□□□□□ -2.14
COPS3-216ENST00000579716 ACACBO00763 2458 aa1.68□□□□□ -2.14
COPS3-216ENST00000579716 CFAP46Q8IYW2 2715 aa1.67□□□□□ -2.14
COPS3-216ENST00000579716 LAMA5O15230 3695 aa1.67□□□□□ -2.14
COPS3-216ENST00000579716 KIAA1109Q2LD37 5005 aa1.66□□□□□ -2.14
COPS3-216ENST00000579716 ZZEF1O43149 2961 aa1.66□□□□□ -2.14
COPS3-216ENST00000579716 DNAH12Q6ZR08 3092 aa1.66□□□□□ -2.14
COPS3-216ENST00000579716 MKI67P46013 3256 aaKnown RBP1.66□□□□□ -2.14
COPS3-216ENST00000579716 DNAH10Q8IVF4 4471 aa1.66□□□□□ -2.14
COPS3-216ENST00000579716 SMR3BP02814 79 aaPredicted RBP1.65□□□□□ -2.15
COPS3-216ENST00000579716 TGP01266 2768 aa1.65□□□□□ -2.15
COPS3-216ENST00000579716 DMXL1Q9Y485 3027 aa1.65□□□□□ -2.15
COPS3-216ENST00000579716 MUC2Q02817 5179 aa1.65□□□□□ -2.15
COPS3-216ENST00000579716 HIVEP1P15822 2718 aa1.63□□□□□ -2.15
COPS3-216ENST00000579716 MAST4O15021 2626 aa1.63□□□□□ -2.15
COPS3-216ENST00000579716 USP9XQ93008 2570 aaPredicted RBP1.63□□□□□ -2.15
COPS3-216ENST00000579716 PKD1L1Q8TDX9 2849 aa1.62□□□□□ -2.15
COPS3-216ENST00000579716 ZANQ9Y493 2812 aa1.62□□□□□ -2.15
COPS3-216ENST00000579716 DEFB4AO15263 64 aa1.62□□□□□ -2.15
COPS3-216ENST00000579716 KRTAP19-3Q7Z4W3 81 aa1.62□□□□□ -2.15
COPS3-216ENST00000579716 FLGP20930 4061 aaPredicted RBP1.62□□□□□ -2.15
COPS3-216ENST00000579716 CUBNO60494 3623 aa1.61□□□□□ -2.15
COPS3-216ENST00000579716 ANKRD11Q6UB99 2663 aaPredicted RBP1.61□□□□□ -2.15
COPS3-216ENST00000579716 MACF1Q9UPN3 7388 aaKnown RBP1.61□□□□□ -2.15
COPS3-216ENST00000579716 CSMD1Q96PZ7 3565 aa1.6□□□□□ -2.15
COPS3-216ENST00000579716 NBEAL2Q6ZNJ1 2754 aa1.6□□□□□ -2.15
COPS3-216ENST00000579716 FBN3Q75N90 2809 aa1.6□□□□□ -2.15
COPS3-216ENST00000579716 SRCAPQ6ZRS2 3230 aa1.6□□□□□ -2.15
COPS3-216ENST00000579716 DMDP11532 3685 aa1.6□□□□□ -2.15
COPS3-216ENST00000579716 VPS13AQ96RL7 3174 aa1.6□□□□□ -2.15
COPS3-216ENST00000579716 CENPEQ02224 2701 aa1.6□□□□□ -2.15
COPS3-216ENST00000579716 FREM2Q5SZK8 3169 aa1.59□□□□□ -2.15
COPS3-216ENST00000579716 TLN2Q9Y4G6 2542 aa1.59□□□□□ -2.15
COPS3-216ENST00000579716 DCHS1Q96JQ0 3298 aa1.59□□□□□ -2.16
COPS3-216ENST00000579716 SMG1Q96Q15 3661 aaKnown RBP1.59□□□□□ -2.16
COPS3-216ENST00000579716 ZFYVE26Q68DK2 2539 aa1.57□□□□□ -2.16
COPS3-216ENST00000579716 MT1AP04731 61 aa1.57□□□□□ -2.16
COPS3-216ENST00000579716 FRAS1Q86XX4 4008 aa1.57□□□□□ -2.16
COPS3-216ENST00000579716 HSPG2P98160 4391 aa1.57□□□□□ -2.16
COPS3-216ENST00000579716 AHNAK2Q8IVF2 5795 aa1.57□□□□□ -2.16
COPS3-216ENST00000579716 HECTD4Q9Y4D8 3996 aa1.57□□□□□ -2.16
COPS3-216ENST00000579716 KRTAP19-5Q3LI72 72 aa1.56□□□□□ -2.16
COPS3-216ENST00000579716 PKD1P98161 4303 aa1.56□□□□□ -2.16
COPS3-216ENST00000579716 ITPR2Q14571 2701 aa1.56□□□□□ -2.16
COPS3-216ENST00000579716 FAT3Q8TDW7 4589 aa1.56□□□□□ -2.16
COPS3-216ENST00000579716 MXRA5Q9NR99 2828 aa1.55□□□□□ -2.16
COPS3-216ENST00000579716 SPRR2DP22532 72 aa1.55□□□□□ -2.16
COPS3-216ENST00000579716 FLNBO75369 2602 aaKnown RBP1.55□□□□□ -2.16
COPS3-216ENST00000579716 FLNAP21333 2647 aaKnown RBP1.55□□□□□ -2.16
COPS3-216ENST00000579716 LAMA3Q16787 3333 aa1.55□□□□□ -2.16
COPS3-216ENST00000579716 CMYA5Q8N3K9 4069 aa1.55□□□□□ -2.16
COPS3-216ENST00000579716 TEX15Q9BXT5 2789 aa1.55□□□□□ -2.16
COPS3-216ENST00000579716 SPRR2BP35325 72 aa1.54□□□□□ -2.16
COPS3-216ENST00000579716 DNAH6Q9C0G6 4158 aa1.54□□□□□ -2.16
COPS3-216ENST00000579716 CFAP47Q6ZTR5 3102 aa1.54□□□□□ -2.16
COPS3-216ENST00000579716 SPTBN5Q9NRC6 3674 aaKnown RBP1.54□□□□□ -2.16
COPS3-216ENST00000579716 DNAH1Q9P2D7 4330 aa1.54□□□□□ -2.16
COPS3-216ENST00000579716 DOPEY1Q5JWR5 2465 aa1.54□□□□□ -2.16
COPS3-216ENST00000579716 SVEP1Q4LDE5 3571 aa1.53□□□□□ -2.16
COPS3-216ENST00000579716 KALRNO60229 2985 aa1.53□□□□□ -2.16
COPS3-216ENST00000579716 WDFY4Q6ZS81 3184 aa1.53□□□□□ -2.17
COPS3-216ENST00000579716 HUWE1Q7Z6Z7 4374 aaKnown RBP1.52□□□□□ -2.17
COPS3-216ENST00000579716 SPEGQ15772 3267 aa1.52□□□□□ -2.17
COPS3-216ENST00000579716 MYO18BQ8IUG5 2567 aa1.51□□□□□ -2.17
COPS3-216ENST00000579716 XIRP2A4UGR9 3374 aa1.51□□□□□ -2.17
COPS3-216ENST00000579716 SYNE2Q8WXH0 6885 aaKnown RBP1.51□□□□□ -2.17
COPS3-216ENST00000579716 MUC5BQ9HC84 5762 aaPredicted RBP1.5□□□□□ -2.17
COPS3-216ENST00000579716 GOLGB1Q14789 3259 aaKnown RBP1.5□□□□□ -2.17
COPS3-216ENST00000579716 PLECQ15149 4684 aaKnown RBP1.49□□□□□ -2.17
COPS3-216ENST00000579716 MUC3AQ02505 3323 aa1.48□□□□□ -2.17
COPS3-216ENST00000579716 SPRR2AP35326 72 aa1.48□□□□□ -2.17
COPS3-216ENST00000579716 APOBP04114 4563 aaKnown RBP1.48□□□□□ -2.17
COPS3-216ENST00000579716 LRP1Q07954 4544 aaKnown RBP1.48□□□□□ -2.17
COPS3-216ENST00000579716 NBEAL1Q6ZS30 2694 aa1.47□□□□□ -2.17
COPS3-216ENST00000579716 DNAH9Q9NYC9 4486 aa1.47□□□□□ -2.17
COPS3-216ENST00000579716 TENM3Q9P273 2699 aa1.46□□□□□ -2.18
COPS3-216ENST00000579716 STAB2Q8WWQ8 2551 aa1.46□□□□□ -2.18
COPS3-216ENST00000579716 HRNRQ86YZ3 2850 aaPredicted RBP1.45□□□□□ -2.18
COPS3-216ENST00000579716 LOC400499M0QZD8 3231 aa1.45□□□□□ -2.18
COPS3-216ENST00000579716 FASNP49327 2511 aaKnown RBP1.44□□□□□ -2.18
COPS3-216ENST00000579716 CEP295Q9C0D2 2601 aa1.44□□□□□ -2.18
COPS3-216ENST00000579716 TLN1Q9Y490 2541 aaKnown RBP1.43□□□□□ -2.18
COPS3-216ENST00000579716 NEBP20929 6669 aa1.43□□□□□ -2.18
COPS3-216ENST00000579716 KRTAP6-2Q3LI66 62 aa1.43□□□□□ -2.18
COPS3-216ENST00000579716 UTRNP46939 3433 aa1.43□□□□□ -2.18
COPS3-216ENST00000579716 LAMA1P25391 3075 aa1.42□□□□□ -2.18
COPS3-216ENST00000579716 CSMD2Q7Z408 3487 aa1.42□□□□□ -2.18
COPS3-216ENST00000579716 PKHD1P08F94 4074 aa1.42□□□□□ -2.18
COPS3-216ENST00000579716 FSIP2Q5CZC0 6907 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms