RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 KRTAP25-1Q3LHN0 102 aa5.23□□□□□ -1.57
SMG6-213ENST00000573166 M0QZ58 72 aa5.23□□□□□ -1.57
SMG6-213ENST00000573166 RYR3Q15413 4870 aa5.21□□□□□ -1.58
SMG6-213ENST00000573166 DYNC2H1Q8NCM8 4307 aaKnown RBP5.21□□□□□ -1.58
SMG6-213ENST00000573166 DNAH2Q9P225 4427 aa5.19□□□□□ -1.58
SMG6-213ENST00000573166 RYR1P21817 5038 aa5.19□□□□□ -1.58
SMG6-213ENST00000573166 SACSQ9NZJ4 4579 aa5.19□□□□□ -1.58
SMG6-213ENST00000573166 DNAH7Q8WXX0 4024 aa5.19□□□□□ -1.58
SMG6-213ENST00000573166 RYR2Q92736 4967 aa5.18□□□□□ -1.58
SMG6-213ENST00000573166 FRAS1Q86XX4 4008 aa5.15□□□□□ -1.59
SMG6-213ENST00000573166 HYDINQ4G0P3 5121 aa5.13□□□□□ -1.59
SMG6-213ENST00000573166 FAT2Q9NYQ8 4349 aa5.13□□□□□ -1.59
SMG6-213ENST00000573166 KMT2CQ8NEZ4 4911 aaKnown RBP5.12□□□□□ -1.59
SMG6-213ENST00000573166 PLAC4Q8WY50 150 aa5.08□□□□□ -1.6
SMG6-213ENST00000573166 DNAH8Q96JB1 4490 aa5.06□□□□□ -1.6
SMG6-213ENST00000573166 KRTAP10-10P60014 251 aa5.05□□□□□ -1.6
SMG6-213ENST00000573166 APOBP04114 4563 aaKnown RBP5.04□□□□□ -1.6
SMG6-213ENST00000573166 KRTAP17-1Q9BYP8 105 aa5.04□□□□□ -1.6
SMG6-213ENST00000573166 H0YAA0 97 aa5.03□□□□□ -1.6
SMG6-213ENST00000573166 DNAH6Q9C0G6 4158 aa5.02□□□□□ -1.61
SMG6-213ENST00000573166 BIRC6Q9NR09 4857 aa5.01□□□□□ -1.61
SMG6-213ENST00000573166 VPS13BQ7Z7G8 4022 aa4.99□□□□□ -1.61
SMG6-213ENST00000573166 PKHD1P08F94 4074 aa4.98□□□□□ -1.61
SMG6-213ENST00000573166 HERC2O95714 4834 aa4.98□□□□□ -1.61
SMG6-213ENST00000573166 KRTAP3-1Q9BYR8 98 aa4.96□□□□□ -1.62
SMG6-213ENST00000573166 HECTD4Q9Y4D8 3996 aa4.95□□□□□ -1.62
SMG6-213ENST00000573166 P0C880 135 aa4.93□□□□□ -1.62
SMG6-213ENST00000573166 LRP1Q07954 4544 aaKnown RBP4.93□□□□□ -1.62
SMG6-213ENST00000573166 C10orf95Q9H7T3 257 aa4.89□□□□□ -1.63
SMG6-213ENST00000573166 EPPK1P58107 5090 aaKnown RBP4.88□□□□□ -1.63
SMG6-213ENST00000573166 MYCBP2O75592 4640 aa4.87□□□□□ -1.63
SMG6-213ENST00000573166 HSPG2P98160 4391 aa4.86□□□□□ -1.63
SMG6-213ENST00000573166 FAT3Q8TDW7 4589 aa4.83□□□□□ -1.64
SMG6-213ENST00000573166 PKD1P98161 4303 aa4.83□□□□□ -1.64
SMG6-213ENST00000573166 TNP1P09430 55 aa4.79□□□□□ -1.64
SMG6-213ENST00000573166 KRTAP4-1Q9BYQ7 146 aa4.78□□□□□ -1.64
SMG6-213ENST00000573166 KRTAP13-4Q3LI77 160 aa4.77□□□□□ -1.65
SMG6-213ENST00000573166 PP632Q6XCG6 107 aa4.76□□□□□ -1.65
SMG6-213ENST00000573166 ABCA13Q86UQ4 5058 aa4.72□□□□□ -1.65
SMG6-213ENST00000573166 KRTAP3-3Q9BYR6 98 aa4.71□□□□□ -1.66
SMG6-213ENST00000573166 PRO2289Q9P1D8 64 aa4.71□□□□□ -1.66
SMG6-213ENST00000573166 KRTAP10-6P60371 365 aaPredicted RBP4.7□□□□□ -1.66
SMG6-213ENST00000573166 KRTAP12-2P59991 146 aa4.68□□□□□ -1.66
SMG6-213ENST00000573166 LRP2P98164 4655 aa4.67□□□□□ -1.66
SMG6-213ENST00000573166 KRTAP3-2Q9BYR7 98 aa4.61□□□□□ -1.67
SMG6-213ENST00000573166 PCLOQ9Y6V0 5065 aa4.61□□□□□ -1.67
SMG6-213ENST00000573166 HERC1Q15751 4861 aa4.6□□□□□ -1.67
SMG6-213ENST00000573166 MT1HP80294 61 aa4.6□□□□□ -1.67
SMG6-213ENST00000573166 KRTAP12-1P59990 96 aa4.57□□□□□ -1.68
SMG6-213ENST00000573166 LORP23490 312 aaPredicted RBP4.5□□□□□ -1.69
SMG6-213ENST00000573166 LPAP08519 4548 aa4.48□□□□□ -1.69
SMG6-213ENST00000573166 TNXBP22105 4242 aa4.47□□□□□ -1.69
SMG6-213ENST00000573166 MT2AP02795 61 aa4.46□□□□□ -1.7
SMG6-213ENST00000573166 PKHD1L1Q86WI1 4243 aa4.45□□□□□ -1.7
SMG6-213ENST00000573166 KRTAP15-1Q3LI76 137 aa4.43□□□□□ -1.7
SMG6-213ENST00000573166 MT1FP04733 61 aa4.39□□□□□ -1.71
SMG6-213ENST00000573166 LCE2CQ5TA81 110 aa4.35□□□□□ -1.71
SMG6-213ENST00000573166 HMCN2Q8NDA2 5059 aa4.32□□□□□ -1.72
SMG6-213ENST00000573166 RNF213Q63HN8 5207 aa4.31□□□□□ -1.72
SMG6-213ENST00000573166 UBR4Q5T4S7 5183 aa4.3□□□□□ -1.72
SMG6-213ENST00000573166 SPRR2GQ9BYE4 73 aa4.3□□□□□ -1.72
SMG6-213ENST00000573166 FSIP2Q5CZC0 6907 aa4.3□□□□□ -1.72
SMG6-213ENST00000573166 KRTAP19-2Q3LHN2 52 aa4.27□□□□□ -1.73
SMG6-213ENST00000573166 KRTAP10-12P60413 245 aa4.24□□□□□ -1.73
SMG6-213ENST00000573166 KRTAP9-8Q9BYQ0 159 aa4.24□□□□□ -1.73
SMG6-213ENST00000573166 FAT4Q6V0I7 4981 aa4.23□□□□□ -1.73
SMG6-213ENST00000573166 KRTAP19-1Q8IUB9 90 aa4.19□□□□□ -1.74
SMG6-213ENST00000573166 MUC2Q02817 5179 aa4.17□□□□□ -1.74
SMG6-213ENST00000573166 FLGP20930 4061 aaPredicted RBP4.14□□□□□ -1.75
SMG6-213ENST00000573166 MUC17Q685J3 4493 aa4.14□□□□□ -1.75
SMG6-213ENST00000573166 INE1O15225 51 aa4.13□□□□□ -1.75
SMG6-213ENST00000573166 KRTAP19-8Q3LI54 63 aa4.11□□□□□ -1.75
SMG6-213ENST00000573166 KRTAP9-3Q9BYQ3 159 aa4.11□□□□□ -1.75
SMG6-213ENST00000573166 KRTAP8-1Q8IUC2 63 aa4.1□□□□□ -1.75
SMG6-213ENST00000573166 LCE2AQ5TA79 106 aaPredicted RBP4.09□□□□□ -1.75
SMG6-213ENST00000573166 LCE3AQ5TA76 89 aa4.08□□□□□ -1.76
SMG6-213ENST00000573166 KRTAP12-3P60328 96 aa4.06□□□□□ -1.76
SMG6-213ENST00000573166 MT1BP07438 61 aa4.04□□□□□ -1.76
SMG6-213ENST00000573166 KRTAP23-1A1A580 65 aa4.03□□□□□ -1.76
SMG6-213ENST00000573166 LCE2BO14633 110 aa4□□□□□ -1.77
SMG6-213ENST00000573166 KRTAP10-5P60370 271 aa3.97□□□□□ -1.77
SMG6-213ENST00000573166 KRTAP9-2Q9BYQ4 174 aa3.96□□□□□ -1.78
SMG6-213ENST00000573166 MT1XP80297 61 aa3.95□□□□□ -1.78
SMG6-213ENST00000573166 CRCT1Q9UGL9 99 aa3.93□□□□□ -1.78
SMG6-213ENST00000573166 SPRR2FQ96RM1 72 aa3.93□□□□□ -1.78
SMG6-213ENST00000573166 KRTAP10-7P60409 375 aaPredicted RBP3.9□□□□□ -1.78
SMG6-213ENST00000573166 LCE2DQ5TA82 110 aaPredicted RBP3.86□□□□□ -1.79
SMG6-213ENST00000573166 KRTAP19-5Q3LI72 72 aa3.84□□□□□ -1.79
SMG6-213ENST00000573166 KRTAP4-8A0A0G2JLE6 195 aa3.79□□□□□ -1.8
SMG6-213ENST00000573166 KRTAP4-8Q9BYQ9 185 aa3.79□□□□□ -1.8
SMG6-213ENST00000573166 KRTAP19-6Q3LI70 58 aa3.79□□□□□ -1.8
SMG6-213ENST00000573166 KRTAP9-6A0A140TA67 174 aa3.73□□□□□ -1.81
SMG6-213ENST00000573166 SPRR2EP22531 72 aa3.71□□□□□ -1.82
SMG6-213ENST00000573166 SPRR2BP35325 72 aa3.71□□□□□ -1.82
SMG6-213ENST00000573166 SPRR2AP35326 72 aa3.71□□□□□ -1.82
SMG6-213ENST00000573166 USH2AO75445 5202 aa3.69□□□□□ -1.82
SMG6-213ENST00000573166 LCE3CQ5T5A8 94 aa3.61□□□□□ -1.83
SMG6-213ENST00000573166 SPRR5A0A1B0GTR4 108 aa3.6□□□□□ -1.83
SMG6-213ENST00000573166 KRTAP19-4Q3LI73 84 aa3.59□□□□□ -1.84
SMG6-213ENST00000573166 OBSCNQ5VST9 7968 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms